# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_77 - 231 UPF0020 PF01170.13 180 1.1e-06 21.5 0.0 1 2 0.00017 0.02 7.6 0.0 103 120 17 34 4 86 0.76 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_77 - 231 UPF0020 PF01170.13 180 1.1e-06 21.5 0.0 2 2 7.5e-06 0.0009 12.0 0.0 27 54 162 189 157 217 0.79 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_34 - 190 cobW PF02492.14 178 1.7e-05 17.5 0.0 1 1 1.9e-07 2.3e-05 17.1 0.0 3 37 8 45 6 56 0.83 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_34 - 190 ABC_ATPase PF09818.4 448 6e-05 14.9 0.0 1 1 6.7e-07 8.1e-05 14.4 0.0 248 280 9 41 5 47 0.92 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 MipZ PF09140.6 261 9.6e-16 50.7 2.2 1 1 1.6e-15 1.9e-13 43.2 1.5 2 143 2 123 1 133 0.85 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 CoaE PF01121.15 180 0.0011 11.6 0.0 1 1 1.4e-05 0.0017 10.9 0.0 3 27 8 32 6 57 0.83 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_103 - 767 DUF87 PF01935.12 229 0.00082 12.4 0.0 1 1 4.5e-05 0.0027 10.7 0.0 16 40 130 153 119 163 0.84 # 84243 # 86543 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_3 - 387 DUF87 PF01935.12 229 0.00088 12.3 0.0 1 1 5.9e-05 0.0036 10.3 0.0 28 45 166 183 164 195 0.86 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_3 - 387 AAA_22 PF13401.1 131 3.9e-05 17.0 0.0 1 1 1.9e-06 7.5e-05 16.1 0.0 4 46 161 200 156 266 0.78 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 520 AAA_22 PF13401.1 131 0.00013 15.3 0.0 1 1 8e-06 0.00032 14.0 0.0 7 29 230 252 224 324 0.85 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_22 PF13401.1 131 0.00019 14.8 0.0 1 1 7.6e-06 0.0003 14.1 0.0 7 27 8 28 3 63 0.82 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 387 ATP_bind_1 PF03029.12 238 0.00023 13.9 0.0 1 1 2.8e-06 0.00034 13.4 0.0 1 30 166 195 166 202 0.87 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_71 - 213 SRP54 PF00448.17 196 9.3e-13 41.2 0.1 1 1 1.5e-14 1.8e-12 40.3 0.1 6 97 4 92 1 97 0.80 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 KAP_NTPase PF07693.9 325 0.0016 10.6 0.0 1 1 1.9e-05 0.0023 10.0 0.0 23 42 8 27 2 32 0.88 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_77 - 231 N6_N4_Mtase PF01555.13 231 8.5e-37 120.0 0.0 1 2 2e-15 2.4e-13 43.2 0.0 1 114 21 124 21 139 0.92 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_77 - 231 N6_N4_Mtase PF01555.13 231 8.5e-37 120.0 0.0 2 2 3.3e-25 3.9e-23 75.2 0.0 169 227 141 199 127 203 0.91 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_34 - 190 AAA_17 PF13207.1 121 2.6e-07 24.7 0.1 1 1 8.2e-09 3.3e-07 24.4 0.1 1 27 7 32 7 129 0.82 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_17 - 520 AAA_17 PF13207.1 121 6.9e-06 20.1 0.0 1 1 6.8e-07 2.7e-05 18.2 0.0 1 33 229 267 229 351 0.71 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_71 - 213 AAA_17 PF13207.1 121 0.00037 14.5 0.0 1 1 1.6e-05 0.00063 13.8 0.0 9 77 11 86 2 164 0.67 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 Miro PF08477.8 119 0.00032 14.4 0.0 1 1 4.5e-06 0.00054 13.6 0.0 1 25 7 31 7 84 0.76 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 ArsA_ATPase PF02374.10 305 8.9e-08 24.6 3.9 1 3 4.2e-08 5.1e-06 18.8 0.7 6 38 5 38 1 45 0.87 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 213 ArsA_ATPase PF02374.10 305 8.9e-08 24.6 3.9 2 3 0.0003 0.036 6.2 0.0 100 135 50 87 36 91 0.74 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 213 ArsA_ATPase PF02374.10 305 8.9e-08 24.6 3.9 3 3 0.05 6 -1.1 0.0 70 115 130 174 109 188 0.67 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_17 - 520 T2SE PF00437.15 272 2.1e-42 138.0 0.0 1 2 0.012 0.48 2.4 0.0 147 190 35 80 32 80 0.86 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 520 T2SE PF00437.15 272 2.1e-42 138.0 0.0 2 2 1.3e-42 5.1e-41 133.5 0.0 10 271 99 375 92 376 0.87 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_3 - 387 T2SE PF00437.15 272 1.3e-32 105.9 0.0 1 1 4.2e-34 1.7e-32 105.5 0.0 129 270 162 311 125 313 0.84 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_34 - 190 T2SE PF00437.15 272 3.9e-05 15.8 0.1 1 1 1.4e-06 5.7e-05 15.2 0.1 128 148 5 25 2 34 0.88 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_17 - 520 G-alpha PF00503.15 389 0.00066 11.5 0.0 1 1 1.9e-05 0.0012 10.7 0.0 58 105 227 274 214 314 0.79 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 G-alpha PF00503.15 389 0.00096 11.0 0.0 1 1 2.1e-05 0.0012 10.6 0.0 56 91 3 38 1 48 0.78 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 Zeta_toxin PF06414.7 201 0.00012 14.4 0.2 1 1 5.3e-06 0.00032 13.0 0.2 20 105 4 90 1 97 0.66 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 Zeta_toxin PF06414.7 201 0.00076 11.7 0.1 1 1 2e-05 0.0012 11.1 0.1 18 39 7 28 2 40 0.83 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 VirC1 PF07015.6 231 4.8e-08 25.5 0.1 1 1 5.2e-10 6.2e-08 25.1 0.1 8 200 7 199 1 211 0.71 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 213 Fer4_NifH PF00142.13 273 5.7e-06 18.8 1.3 1 2 2.2e-07 2.6e-05 16.6 0.2 8 37 9 38 1 51 0.86 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 213 Fer4_NifH PF00142.13 273 5.7e-06 18.8 1.3 2 2 0.033 3.9 -0.3 0.0 101 126 62 88 51 91 0.77 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_17 - 520 AAA_16 PF13191.1 185 3.7e-05 16.9 0.0 1 1 1.4e-06 8.4e-05 15.8 0.0 7 54 214 258 211 309 0.79 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_16 PF13191.1 185 7.6e-05 15.9 0.0 1 1 1.9e-06 0.00011 15.3 0.0 27 46 8 27 2 66 0.89 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 387 AAA_23 PF13476.1 202 0.00015 15.3 0.0 1 1 6.4e-06 0.00026 14.5 0.0 19 36 161 178 145 183 0.85 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 520 AAA_23 PF13476.1 202 0.0005 13.6 0.0 1 1 2.5e-05 0.001 12.6 0.0 19 36 227 244 210 248 0.83 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_23 PF13476.1 202 0.00062 13.3 0.1 1 1 2.3e-05 0.0009 12.7 0.1 22 40 8 26 4 34 0.91 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_34 - 190 AAA_18 PF13238.1 129 8.1e-07 22.6 0.0 1 1 4.4e-08 1.3e-06 21.9 0.0 1 22 8 29 8 61 0.79 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 387 AAA_18 PF13238.1 129 3.5e-05 17.3 0.0 1 2 2.8e-05 0.00083 12.8 0.0 2 42 165 211 165 252 0.72 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_3 - 387 AAA_18 PF13238.1 129 3.5e-05 17.3 0.0 2 2 0.053 1.6 2.2 0.1 48 105 334 384 309 386 0.65 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 520 AAA_18 PF13238.1 129 0.00013 15.5 0.1 1 1 2.3e-05 0.00069 13.1 0.0 1 21 230 250 230 326 0.83 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_71 - 213 AAA_18 PF13238.1 129 0.00041 13.8 0.0 1 1 2.8e-05 0.00085 12.8 0.0 8 79 11 85 9 105 0.71 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 213 CbiA PF01656.18 195 3.6e-19 62.1 0.0 1 1 3.9e-21 4.7e-19 61.7 0.0 2 148 4 135 3 182 0.78 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 IIGP PF05049.8 376 0.00037 12.5 0.0 1 1 4.2e-06 0.0005 12.1 0.0 37 67 7 37 2 45 0.81 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_17 - 520 AAA_14 PF13173.1 128 0.0002 14.4 0.0 1 1 1.6e-05 0.00095 12.3 0.0 4 28 229 256 226 272 0.82 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_14 PF13173.1 128 0.00086 12.4 0.0 1 1 2.2e-05 0.0013 11.8 0.0 2 25 5 28 4 44 0.83 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_34 - 190 TIGR03594 TIGR03594 432 0.001 10.9 0.0 1 1 1.3e-05 0.0015 10.4 0.0 176 196 6 26 2 38 0.79 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_34 - 190 AAA_29 PF13555.1 62 6.2e-06 18.9 0.0 1 1 3.2e-07 1.3e-05 17.9 0.0 24 43 6 25 1 36 0.82 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_17 - 520 AAA_29 PF13555.1 62 4.8e-05 16.0 0.1 1 1 2.5e-06 0.0001 15.0 0.1 22 40 227 244 219 247 0.83 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_3 - 387 AAA_29 PF13555.1 62 6.2e-05 15.7 0.1 1 1 3e-06 0.00012 14.8 0.1 25 40 163 178 153 183 0.81 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_34 - 190 MMR_HSR1 PF01926.18 116 1.3e-05 18.4 0.0 1 1 1.4e-07 1.7e-05 18.0 0.0 1 32 7 37 7 85 0.82 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_94 - 277 N6_Mtase PF02384.11 311 1.3e-12 40.5 0.0 1 1 1.5e-14 1.7e-12 40.1 0.0 24 117 137 236 127 265 0.82 # 77057 # 77887 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_34 - 190 DUF258 PF03193.11 161 0.00013 14.4 0.0 1 1 3.1e-06 0.00018 13.9 0.0 34 58 4 28 1 79 0.90 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_111 - 1018 DUF258 PF03193.11 161 0.00072 11.9 0.0 1 1 2.2e-05 0.0013 11.1 0.0 35 59 495 519 488 534 0.80 # 94547 # 97600 # -1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.540 1_103 - 767 TraG-D_C PF12696.2 128 4.9e-08 26.1 1.0 1 1 8.9e-10 1.1e-07 25.0 0.5 2 88 438 523 437 556 0.86 # 84243 # 86543 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_71 - 213 AAA_31 PF13614.1 157 2e-09 30.7 0.2 1 2 1.1e-08 1.3e-06 21.6 0.0 2 42 2 42 1 61 0.88 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 213 AAA_31 PF13614.1 157 2e-09 30.7 0.2 2 2 0.00027 0.033 7.3 0.0 105 134 66 95 56 109 0.77 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 NTPase_1 PF03266.10 168 8.8e-05 15.4 0.0 1 1 1.1e-06 0.00013 14.8 0.0 1 19 7 25 7 31 0.89 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_34 - 190 AAA_33 PF13671.1 143 1.3e-05 18.2 0.0 1 1 6.4e-07 2.6e-05 17.3 0.0 2 121 8 138 8 156 0.68 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 AAA_33 PF13671.1 143 5.8e-05 16.2 0.1 1 1 7.9e-06 0.00032 13.8 0.1 9 88 11 97 3 187 0.74 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_17 - 520 AAA_33 PF13671.1 143 0.00082 12.4 0.0 1 1 0.00014 0.0056 9.7 0.0 2 21 230 249 230 272 0.88 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_71 - 213 KTI12 PF08433.5 270 0.00035 13.0 0.1 1 1 1.3e-05 0.00075 11.9 0.0 11 49 11 49 1 87 0.85 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 KTI12 PF08433.5 270 0.0009 11.6 0.0 1 1 2.1e-05 0.0013 11.1 0.0 4 24 8 28 7 58 0.86 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_77 - 231 Methyltransf_26 PF13659.1 117 3.6e-12 39.5 0.1 1 2 4.5e-08 2.7e-06 20.6 0.0 55 112 5 69 2 74 0.74 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_77 - 231 Methyltransf_26 PF13659.1 117 3.6e-12 39.5 0.1 2 2 6.1e-07 3.7e-05 16.9 0.1 4 37 167 199 164 221 0.78 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_94 - 277 Methyltransf_26 PF13659.1 117 3.6e-05 17.0 0.3 1 1 3.2e-06 0.00019 14.7 0.0 4 62 171 236 169 264 0.80 # 77057 # 77887 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_17 - 520 AAA_30 PF13604.1 196 8.2e-05 15.4 0.0 1 1 3.6e-06 0.00014 14.6 0.0 4 45 213 255 210 275 0.85 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_30 PF13604.1 196 0.00043 13.0 0.0 1 1 1.6e-05 0.00064 12.5 0.0 16 40 3 27 1 42 0.85 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 AAA_30 PF13604.1 196 0.00048 12.9 0.1 1 1 2.3e-05 0.00092 12.0 0.1 27 104 10 89 2 96 0.62 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 FtsK_SpoIIIE PF01580.13 205 3e-05 16.7 0.0 1 1 1.2e-06 4.7e-05 16.1 0.0 36 58 3 25 1 32 0.90 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 387 FtsK_SpoIIIE PF01580.13 205 3.5e-05 16.5 0.0 1 1 1.4e-06 5.5e-05 15.9 0.0 39 78 162 200 143 364 0.71 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 520 FtsK_SpoIIIE PF01580.13 205 0.00029 13.5 0.0 1 1 1.3e-05 0.00053 12.6 0.0 40 87 229 275 208 292 0.79 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 ABC_tran PF00005.22 137 3.5e-06 20.5 0.0 1 1 1.3e-07 5.3e-06 19.9 0.0 9 39 3 33 2 63 0.81 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 387 ABC_tran PF00005.22 137 7.3e-05 16.3 0.0 1 1 3.3e-06 0.00013 15.4 0.0 15 39 165 189 157 233 0.87 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 520 ABC_tran PF00005.22 137 7.3e-05 16.3 0.0 1 1 6.4e-06 0.00026 14.5 0.0 13 38 229 254 225 296 0.85 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_77 - 231 Cons_hypoth95 PF03602.10 183 1.6e-05 17.6 0.0 1 2 0.00027 0.033 6.7 0.0 112 132 18 37 4 76 0.72 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_77 - 231 Cons_hypoth95 PF03602.10 183 1.6e-05 17.6 0.0 2 2 5.9e-05 0.0071 8.9 0.0 42 65 163 188 144 210 0.75 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_34 - 190 DAP3 PF10236.4 309 1.4e-05 17.2 0.0 1 1 3.2e-07 1.9e-05 16.8 0.0 21 45 3 27 1 32 0.87 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_17 - 520 DAP3 PF10236.4 309 0.00047 12.3 0.0 1 1 1.5e-05 0.00089 11.4 0.0 20 41 224 245 213 249 0.80 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_19 PF13245.1 76 3.6e-06 19.9 0.0 1 1 1.7e-07 6.7e-06 19.0 0.0 10 30 5 24 2 43 0.73 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 AAA_19 PF13245.1 76 5.5e-05 16.1 0.1 1 1 4.1e-06 0.00016 14.6 0.1 20 57 11 46 3 76 0.81 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_17 - 520 AAA_19 PF13245.1 76 0.0005 13.0 0.0 1 1 2.8e-05 0.0011 11.9 0.0 10 36 228 253 218 265 0.69 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_111 - 1018 AAA_10 PF12846.2 304 2.1e-30 99.3 0.0 1 1 1.4e-31 3.4e-30 98.6 0.0 8 303 502 898 498 899 0.86 # 94547 # 97600 # -1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.540 1_103 - 767 AAA_10 PF12846.2 304 1e-07 24.8 0.5 1 1 1.1e-08 2.6e-07 23.5 0.1 2 292 137 506 136 517 0.72 # 84243 # 86543 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_17 - 520 AAA_10 PF12846.2 304 8.9e-06 18.4 0.0 1 1 7e-07 1.7e-05 17.5 0.0 4 91 230 324 228 342 0.63 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_10 PF12846.2 304 0.00011 14.8 0.0 1 1 7.4e-06 0.00018 14.2 0.0 4 21 8 25 5 35 0.86 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 387 AAA_10 PF12846.2 304 0.00041 13.0 0.0 1 1 3.3e-05 0.00078 12.0 0.0 3 30 163 190 161 203 0.79 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_77 - 231 Methyltransf_31 PF13847.1 152 9.6e-05 15.2 0.0 1 2 0.00038 0.045 6.5 0.0 70 118 16 80 3 115 0.75 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_77 - 231 Methyltransf_31 PF13847.1 152 9.6e-05 15.2 0.0 2 2 0.00029 0.035 6.9 0.0 4 38 164 195 161 197 0.84 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_34 - 190 Viral_helicase1 PF01443.13 234 0.00013 14.7 0.0 1 1 1.4e-06 0.00016 14.4 0.0 1 21 8 28 8 81 0.82 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 DUF2075 PF09848.4 352 3.6e-05 16.0 0.0 1 1 6.9e-07 4.1e-05 15.8 0.0 5 94 4 89 1 130 0.75 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_34 - 190 DUF2075 PF09848.4 352 0.0002 13.5 0.0 1 1 4.2e-06 0.00025 13.2 0.0 3 24 7 28 5 58 0.84 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_103 - 767 TrwB_AAD_bind PF10412.4 386 1.2e-05 17.3 0.3 1 2 0.00048 0.029 6.1 0.0 13 35 134 156 126 172 0.82 # 84243 # 86543 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_103 - 767 TrwB_AAD_bind PF10412.4 386 1.2e-05 17.3 0.3 2 2 9.5e-05 0.0057 8.4 0.2 260 331 452 524 441 574 0.72 # 84243 # 86543 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_34 - 190 TrwB_AAD_bind PF10412.4 386 0.0001 14.1 0.0 1 1 2.5e-06 0.00015 13.6 0.0 12 36 2 26 1 43 0.84 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_77 - 231 MethyltransfD12 PF02086.10 260 0.00025 13.7 0.0 1 2 0.0016 0.19 4.2 0.0 177 245 20 86 10 96 0.75 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_77 - 231 MethyltransfD12 PF02086.10 260 0.00025 13.7 0.0 2 2 0.00017 0.02 7.4 0.0 21 46 164 189 151 197 0.78 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_34 - 190 ArgK PF03308.11 267 9.7e-05 14.4 0.0 1 1 1.1e-06 0.00014 13.9 0.0 29 51 5 27 2 41 0.86 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_34 - 190 AAA_24 PF13479.1 213 0.00051 12.8 0.0 1 1 6.3e-06 0.00076 12.2 0.0 2 34 4 37 3 89 0.85 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_26 - 180 TIGR00922 TIGR00922 172 9.4e-07 21.7 0.0 1 1 9.5e-09 1.1e-06 21.4 0.0 54 133 70 149 26 157 0.85 # 21475 # 22014 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.456 1_34 - 190 NACHT PF05729.7 166 0.00025 13.9 0.2 1 1 3.5e-06 0.00042 13.1 0.2 2 20 7 25 6 29 0.90 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 387 AAA_25 PF13481.1 194 2.3e-05 17.0 0.0 1 1 1.3e-06 3.9e-05 16.3 0.0 26 58 154 186 129 239 0.88 # 886 # 2046 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_71 - 213 AAA_25 PF13481.1 194 6.1e-05 15.6 0.9 1 1 8.3e-06 0.00025 13.6 0.9 41 107 9 76 2 132 0.59 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_17 - 520 AAA_25 PF13481.1 194 0.00028 13.5 0.0 1 2 0.00021 0.0062 9.1 0.0 19 57 212 251 204 272 0.77 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 520 AAA_25 PF13481.1 194 0.00028 13.5 0.0 2 2 0.043 1.3 1.5 0.0 154 190 300 339 296 342 0.74 # 12734 # 14293 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_34 - 190 AAA_25 PF13481.1 194 0.00041 12.9 0.0 1 1 2e-05 0.0006 12.4 0.0 32 53 4 25 1 72 0.90 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_77 - 231 Methyltransf_15 PF09445.5 164 8.4e-05 15.3 0.0 1 2 0.0058 0.69 2.6 0.0 53 80 4 30 2 37 0.92 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_77 - 231 Methyltransf_15 PF09445.5 164 8.4e-05 15.3 0.0 2 2 2.1e-05 0.0025 10.5 0.0 3 32 166 195 164 208 0.86 # 66212 # 66904 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_34 - 190 AAA_28 PF13521.1 163 7.4e-46 149.2 0.0 1 1 7.1e-48 8.6e-46 149.0 0.0 1 163 7 171 7 171 0.96 # 28600 # 29169 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.553 1_71 - 213 APS_kinase PF01583.15 157 9.8e-05 15.2 0.1 1 1 1.7e-06 0.00021 14.2 0.1 11 43 10 42 2 52 0.88 # 61039 # 61677 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8f3105bf-db0b-4033-bb62-9af0dff01e33 # Target file: checkm_output/bins/pm1424/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1424/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8f3105bf-db0b-4033-bb62-9af0dff01e33 checkm_output/bins/pm1424/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:40 2020 # [ok]