# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 341 cobW PF02492.14 178 0.00012 13.5 0.0 1 1 6.8e-06 0.00034 12.0 0.0 3 29 155 180 153 197 0.71 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 IstB_IS21 PF01695.12 178 1.8e-63 205.1 0.0 1 1 4.1e-65 2e-63 204.9 0.0 17 177 4 166 1 167 0.96 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_41 - 228 MipZ PF09140.6 261 2.2e-08 25.4 5.4 1 2 0.00028 0.014 6.3 0.5 6 23 19 36 14 59 0.83 # 33229 # 33912 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_41 - 228 MipZ PF09140.6 261 2.2e-08 25.4 5.4 2 2 5.7e-09 2.9e-07 21.7 0.5 83 150 71 138 45 166 0.83 # 33229 # 33912 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_9 - 154 SSB PF00436.20 104 7.7e-45 143.0 0.8 1 1 1.8e-46 9.1e-45 142.8 0.8 1 103 6 112 6 113 0.97 # 9468 # 9929 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_1 - 193 AAA_22 PF13401.1 131 3.3e-07 22.5 0.0 1 1 2.1e-06 5.3e-05 15.3 0.0 4 47 34 72 31 134 0.72 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 AAA_22 PF13401.1 131 2.5e-05 16.4 0.0 1 1 2.3e-06 5.7e-05 15.2 0.0 2 67 150 228 148 259 0.68 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 KAP_NTPase PF07693.9 325 3.4e-05 14.8 0.0 1 1 1.6e-06 7.9e-05 13.6 0.0 18 53 150 183 135 225 0.78 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 AAA_17 PF13207.1 121 8.6e-06 18.5 0.0 1 1 6.9e-07 1.7e-05 17.6 0.0 1 64 154 226 154 275 0.61 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 AAA_17 PF13207.1 121 0.00014 14.6 0.1 1 1 9.2e-06 0.00023 13.9 0.1 2 26 37 64 36 132 0.71 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 PhoH PF02562.11 205 9.4e-08 23.4 0.0 1 1 2.4e-09 1.2e-07 23.1 0.0 14 57 29 72 17 114 0.82 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 AFG1_ATPase PF03969.11 362 7.3e-05 13.5 0.0 1 1 2.4e-06 0.00012 12.9 0.0 64 214 36 184 15 191 0.79 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 T2SE PF00437.15 272 4.2e-48 155.4 0.0 1 1 9.8e-50 4.9e-48 155.2 0.0 7 270 31 302 25 304 0.94 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 Zeta_toxin PF06414.7 201 0.00011 13.2 0.0 1 1 5.7e-06 0.00028 11.9 0.0 14 43 150 179 139 230 0.82 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 Arch_ATPase PF01637.13 234 3.6e-05 15.4 0.0 1 1 1.4e-06 6.8e-05 14.5 0.0 6 50 140 181 139 227 0.76 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 AAA_16 PF13191.1 185 1.1e-06 20.6 0.0 1 1 8.3e-08 2.1e-06 19.8 0.0 20 57 148 185 138 228 0.75 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 AAA_16 PF13191.1 185 1.8e-06 20.0 0.7 1 1 1.1e-06 2.7e-05 16.2 0.5 23 51 33 61 20 164 0.87 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 AAA_23 PF13476.1 202 1.3e-06 20.8 0.0 1 2 0.033 1.7 0.8 0.0 70 133 34 92 5 110 0.78 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 AAA_23 PF13476.1 202 1.3e-06 20.8 0.0 2 2 2.7e-07 1.3e-05 17.5 0.0 19 39 152 172 142 174 0.91 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 AAA_18 PF13238.1 129 4e-05 15.9 0.0 1 1 2e-06 9.8e-05 14.6 0.0 2 23 156 179 156 225 0.76 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_41 - 228 CbiA PF01656.18 195 3e-05 15.4 3.0 1 1 2.8e-06 7e-05 14.2 3.0 3 174 18 168 16 186 0.67 # 33229 # 33912 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_1 - 193 CbiA PF01656.18 195 0.0003 12.1 0.2 1 1 1.4e-05 0.00034 12.0 0.2 3 44 38 80 37 188 0.72 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 KaiC PF06745.8 227 0.00018 12.5 0.0 1 1 2.5e-05 0.00063 10.8 0.0 16 81 149 210 138 253 0.72 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 KaiC PF06745.8 227 0.00048 11.2 0.0 1 1 5.3e-05 0.0013 9.7 0.1 18 60 33 74 29 92 0.86 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 AAA_14 PF13173.1 128 7.3e-08 24.3 0.0 1 2 8.5e-09 4.2e-07 21.9 0.0 3 97 35 136 33 151 0.64 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 AAA_14 PF13173.1 128 7.3e-08 24.3 0.0 2 2 0.032 1.6 0.6 0.0 14 46 148 180 146 190 0.80 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 AAA_29 PF13555.1 62 0.00016 13.1 0.0 1 1 8.8e-06 0.00044 11.7 0.0 21 40 150 169 144 170 0.82 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 AAA PF00004.24 132 6e-09 28.1 0.0 1 1 2.1e-10 1e-08 27.4 0.0 1 70 37 108 37 141 0.81 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 Bac_DnaA PF00308.13 219 1.3e-09 29.9 0.0 1 1 3.7e-11 1.8e-09 29.4 0.0 36 136 36 134 22 142 0.84 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 Sigma54_activat PF00158.21 168 0.00028 12.3 0.1 1 1 1.6e-05 0.00079 10.8 0.1 19 65 31 77 17 128 0.79 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 DUF258 PF03193.11 161 7.4e-05 13.9 0.0 1 1 4.3e-06 0.00011 13.4 0.0 26 59 25 58 13 89 0.82 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 DUF258 PF03193.11 161 0.00029 12.0 0.0 1 1 2.1e-05 0.00052 11.2 0.0 22 69 138 186 123 196 0.81 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 NTPase_1 PF03266.10 168 5e-05 15.0 0.1 1 2 0.00084 0.042 5.5 0.1 2 31 37 66 36 85 0.83 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 NTPase_1 PF03266.10 168 5e-05 15.0 0.1 2 2 0.00019 0.0093 7.6 0.0 87 108 88 109 74 135 0.77 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 AAA_33 PF13671.1 143 0.00043 12.1 0.0 1 1 1.1e-05 0.00055 11.8 0.0 2 20 37 58 37 143 0.76 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 ABC_tran PF00005.22 137 5.4e-05 15.5 0.0 1 1 4.6e-06 0.00011 14.4 0.0 8 49 149 190 146 211 0.82 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 ABC_tran PF00005.22 137 0.00015 14.0 0.2 1 1 2.7e-05 0.00068 11.9 0.1 8 31 31 54 28 64 0.86 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 RuvB_N PF05496.7 234 0.00037 11.5 0.0 1 1 1.1e-05 0.00053 11.0 0.0 49 80 33 67 26 119 0.72 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 AAA_19 PF13245.1 76 0.00078 11.2 2.3 1 2 2.3e-05 0.0011 10.6 0.5 11 35 36 59 28 90 0.81 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 AAA_19 PF13245.1 76 0.00078 11.2 2.3 2 2 0.078 3.9 -0.7 0.0 22 46 148 167 147 184 0.65 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_20 - 860 AAA_10 PF12846.2 304 4.4e-34 110.1 0.0 1 1 3.2e-35 8e-34 109.3 0.0 7 303 480 770 475 771 0.91 # 16956 # 19535 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_1 - 193 AAA_10 PF12846.2 304 6.7e-05 14.3 0.1 1 1 5.5e-06 0.00014 13.3 0.1 3 35 36 68 34 104 0.84 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 TIP49 PF06068.8 398 0.00059 10.5 0.0 1 1 1.9e-05 0.00094 9.8 0.0 52 107 36 94 29 100 0.68 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 Sigma54_activ_2 PF14532.1 138 0.00011 14.2 0.0 1 1 3e-06 0.00015 13.8 0.0 9 62 20 87 17 162 0.68 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 Herpes_ori_bp PF02399.10 824 0.00058 9.7 0.0 1 1 1.8e-05 0.00091 9.1 0.0 47 78 150 180 137 184 0.85 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 341 UPF0079 PF02367.12 123 1.4e-06 19.9 0.0 1 1 4.9e-08 2.4e-06 19.1 0.0 7 44 144 181 138 186 0.85 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_41 - 228 AAA_24 PF13479.1 213 0.00012 13.6 0.3 1 1 8.2e-06 0.00021 12.9 0.1 5 76 12 94 8 107 0.83 # 33229 # 33912 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_1 - 193 AAA_24 PF13479.1 213 0.00039 12.0 0.2 1 1 4.1e-05 0.001 10.6 0.1 5 23 36 54 32 60 0.85 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 NACHT PF05729.7 166 4.6e-05 15.0 0.1 1 1 2.5e-06 6.3e-05 14.6 0.1 3 49 37 84 35 133 0.81 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_24 - 341 NACHT PF05729.7 166 0.00043 11.9 0.0 1 1 3.7e-05 0.00092 10.8 0.0 3 28 155 180 153 233 0.64 # 20887 # 21909 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_1 - 193 AAA_25 PF13481.1 194 2.4e-07 22.2 0.1 1 1 1.3e-08 6.3e-07 20.9 0.0 9 60 5 62 2 130 0.77 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_19 - 271 IPT PF01745.11 233 0.0025 8.9 5.0 1 2 0.019 0.93 0.5 0.1 125 173 41 90 28 99 0.75 # 16147 # 16959 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.408 1_19 - 271 IPT PF01745.11 233 0.0025 8.9 5.0 2 2 3.8e-05 0.0019 9.3 1.8 134 214 168 250 157 264 0.88 # 16147 # 16959 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.408 1_1 - 193 AAA_28 PF13521.1 163 8.6e-05 14.5 0.0 1 1 2.9e-06 0.00014 13.7 0.0 1 49 36 89 36 105 0.73 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_1 - 193 AAA_5 PF07728.9 139 5.3e-06 18.2 0.2 1 1 2.7e-07 1.3e-05 16.9 0.1 1 74 36 105 36 109 0.80 # 1 # 579 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6032727a-f8fc-4ed3-baac-f567c74d8bff # Target file: checkm_output/bins/pm1422/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1422/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6032727a-f8fc-4ed3-baac-f567c74d8bff checkm_output/bins/pm1422/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:39 2020 # [ok]