# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 968 UPF0020 PF01170.13 180 5.1e-06 19.0 0.0 1 2 1.2e-05 0.0012 11.3 0.0 26 49 721 744 717 815 0.74 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 UPF0020 PF01170.13 180 5.1e-06 19.0 0.0 2 2 0.0008 0.077 5.4 0.0 84 116 849 881 826 888 0.93 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_61 - 719 Seryl_tRNA_N PF02403.17 108 0.0039 10.1 9.6 1 2 8.2e-05 0.008 9.1 5.0 47 99 189 241 182 245 0.89 # 47146 # 49302 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_61 - 719 Seryl_tRNA_N PF02403.17 108 0.0039 10.1 9.6 2 2 0.013 1.3 2.0 0.0 45 83 667 708 664 716 0.75 # 47146 # 49302 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_89 - 504 Terminase_6 PF03237.10 384 1.7e-07 23.1 0.0 1 1 2.7e-09 2.6e-07 22.5 0.0 5 311 62 380 60 443 0.76 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 1 4 1.8e-20 1.8e-18 59.6 0.0 5 117 6 131 2 140 0.89 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 2 4 2.4e-08 2.3e-06 19.8 0.0 137 163 197 223 190 285 0.80 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 3 4 2.4e-09 2.3e-07 23.0 0.0 279 311 522 558 450 565 0.80 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 4 4 0.00038 0.037 5.9 0.0 312 333 590 611 577 613 0.88 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_71 - 2290 Helicase_C PF00271.26 78 1.9e-06 20.5 0.0 1 1 1e-07 9.7e-06 18.3 0.0 24 78 1471 1526 1457 1526 0.90 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_89 - 504 Terminase_1 PF03354.10 477 6.8e-06 17.5 0.0 1 1 9.8e-08 9.5e-06 17.0 0.0 26 157 58 193 38 217 0.78 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_60 - 206 AAA_23 PF13476.1 202 9.8e-05 15.6 0.5 1 1 2e-06 9.8e-05 15.6 0.5 132 199 138 203 10 205 0.73 # 46529 # 47146 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.610 1_40 - 175 AAA_23 PF13476.1 202 0.012 8.8 10.9 1 1 0.00029 0.014 8.5 10.9 141 201 61 118 33 122 0.61 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_60 - 206 AAA_13 PF13166.1 712 7.4e-06 17.5 1.1 1 1 1.9e-07 9.1e-06 17.2 1.1 382 465 121 202 72 204 0.81 # 46529 # 47146 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.610 1_40 - 175 AAA_13 PF13166.1 712 0.00025 12.4 5.1 1 1 6e-06 0.00029 12.2 5.1 86 139 64 117 33 139 0.57 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_13 - 306 PAPS_reduct PF01507.14 174 3.5e-12 39.3 0.2 1 1 4e-13 3.9e-11 35.9 0.1 2 140 14 181 13 198 0.74 # 4330 # 5247 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_71 - 2290 N6_Mtase PF02384.11 311 8.9e-07 21.0 0.0 1 2 1.4e-07 1.4e-05 17.2 0.0 123 236 178 287 147 299 0.82 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_71 - 2290 N6_Mtase PF02384.11 311 8.9e-07 21.0 0.0 2 2 0.024 2.3 -0.0 0.0 27 51 2057 2081 2043 2088 0.76 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_71 - 2290 Methyltransf_26 PF13659.1 117 4.3e-10 32.5 0.0 1 1 4.8e-11 2.3e-09 30.2 0.0 2 117 120 234 119 234 0.88 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_34 - 968 Methyltransf_26 PF13659.1 117 2.3e-06 20.5 0.0 1 1 1.5e-07 7.2e-06 18.9 0.0 1 91 724 889 724 926 0.59 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_89 - 504 Helicase_RecD PF05127.9 177 2.5e-05 16.8 0.0 1 1 5.1e-07 5e-05 15.8 0.0 2 107 59 177 58 197 0.72 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_71 - 2290 ResIII PF04851.10 184 3.2e-08 26.4 0.0 1 2 1.2e-05 0.0012 11.6 0.0 23 78 840 899 815 940 0.68 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_71 - 2290 ResIII PF04851.10 184 3.2e-08 26.4 0.0 2 2 8.2e-06 0.00079 12.1 0.1 91 182 983 1102 962 1104 0.71 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_40 - 175 DUF3584 PF12128.3 1201 0.0004 10.6 10.8 1 1 4.7e-06 0.00046 10.4 10.8 600 676 46 122 35 146 0.79 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_89 - 504 Terminase_3 PF04466.8 387 0.0012 10.8 0.1 1 2 0.0001 0.01 7.7 0.1 7 52 59 105 55 119 0.82 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_89 - 504 Terminase_3 PF04466.8 387 0.0012 10.8 0.1 2 2 0.017 1.7 0.4 0.0 220 261 156 196 144 216 0.79 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_34 - 968 MethyltransfD12 PF02086.10 260 2.2e-50 164.3 0.0 1 1 2.9e-52 2.8e-50 164.0 0.0 1 259 706 949 706 950 0.94 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_71 - 2290 SNF2_N PF00176.18 299 6.4e-16 50.8 0.0 1 1 2.7e-17 2.6e-15 48.8 0.0 27 272 844 1225 829 1251 0.78 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2164d95c-61aa-4df9-ade8-08909234c7f0 # Target file: checkm_output/bins/pm1420/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1420/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2164d95c-61aa-4df9-ade8-08909234c7f0 checkm_output/bins/pm1420/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:39 2020 # [ok]