# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_29 - 267 Eno-Rase_NADH_b PF12242.3 78 1.7e-05 17.8 0.3 1 1 2.7e-07 3.2e-05 16.9 0.3 42 73 10 39 2 44 0.71 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_30 - 403 MipZ PF09140.6 261 2.2e-05 16.8 0.5 1 2 0.0016 0.2 3.8 0.0 2 50 113 166 112 193 0.72 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_30 - 403 MipZ PF09140.6 261 2.2e-05 16.8 0.5 2 2 1.2e-05 0.0014 10.9 0.1 90 135 239 284 232 289 0.91 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_8 - 378 ADH_zinc_N PF00107.21 130 1.3e-15 50.3 3.3 1 1 1.2e-16 1.5e-14 46.9 3.3 1 111 186 319 186 334 0.91 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 2_30 - 79 TGS PF02824.16 60 0.0003 13.8 0.3 1 1 3.6e-06 0.00043 13.3 0.3 28 58 5 35 4 37 0.89 # 30740 # 30976 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.485 2_34 - 90 Ribosomal_S7 PF00177.16 148 0.00027 13.7 0.0 1 1 4.8e-06 0.00058 12.6 0.0 18 67 29 78 2 83 0.79 # 32192 # 32461 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_8 - 378 FAD_binding_3 PF01494.14 356 0.00019 13.7 0.2 1 1 2.3e-06 0.00027 13.2 0.2 3 37 178 213 177 238 0.88 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_30 - 403 VirC1 PF07015.6 231 7.3e-05 15.1 0.0 1 2 0.044 5.3 -0.8 0.0 4 23 114 133 112 140 0.80 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_30 - 403 VirC1 PF07015.6 231 7.3e-05 15.1 0.0 2 2 3.5e-06 0.00041 12.6 0.0 81 139 245 304 228 353 0.85 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 2_29 - 267 adh_short PF00106.20 167 5.6e-39 126.9 4.1 1 1 6.1e-41 7.3e-39 126.5 4.1 2 166 9 183 8 184 0.95 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_49 - 507 AAA_13 PF13166.1 712 0.0086 7.6 3.3 1 1 0.00011 0.013 7.1 3.3 410 466 23 79 16 88 0.91 # 43543 # 45063 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_30 - 403 CbiA PF01656.18 195 1.6e-21 69.7 0.0 1 1 2.7e-23 3.3e-21 68.7 0.0 1 153 114 306 114 348 0.77 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_8 - 378 HI0933_like PF03486.9 409 1.7e-05 16.6 0.4 1 1 1.8e-07 2.2e-05 16.2 0.4 2 53 178 229 177 247 0.73 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 2_29 - 267 KR PF08659.5 181 1.7e-19 63.3 2.4 1 1 2.7e-21 3.2e-19 62.4 2.4 3 166 10 182 9 194 0.90 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_30 - 403 AAA_31 PF13614.1 157 5.4e-05 16.3 0.0 1 2 0.0018 0.22 4.6 0.0 2 80 113 195 112 220 0.73 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_30 - 403 AAA_31 PF13614.1 157 5.4e-05 16.3 0.0 2 2 7.2e-05 0.0086 9.2 0.0 109 147 239 276 235 281 0.79 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 2_29 - 267 adh_short_C2 PF13561.1 241 3.1e-32 105.4 0.0 1 1 3.2e-34 3.8e-32 105.1 0.0 5 241 16 257 14 257 0.91 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_49 - 507 DUF3584 PF12128.3 1201 0.011 6.2 9.0 1 1 0.00012 0.015 5.7 9.0 597 662 19 85 3 94 0.76 # 43543 # 45063 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 2_29 - 267 Epimerase PF01370.16 236 1.3e-05 17.9 0.1 1 1 1.7e-07 2.1e-05 17.2 0.1 1 65 10 82 10 185 0.79 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_8 - 378 AlaDh_PNT_C PF01262.16 168 0.00025 13.8 0.1 1 1 4.1e-06 0.00049 12.8 0.1 16 73 171 229 164 240 0.84 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f1c155bf-c661-4eab-b3c5-6a9c2391b8a7 # Target file: checkm_output/bins/pm1417/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1417/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f1c155bf-c661-4eab-b3c5-6a9c2391b8a7 checkm_output/bins/pm1417/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:34 2020 # [ok]