# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 334 Mg_chelatase PF01078.16 207 0.00041 12.1 0.0 1 1 8.7e-06 0.00066 11.4 0.0 13 57 150 194 139 214 0.73 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 cobW PF02492.14 178 7.3e-05 14.8 0.0 1 1 1.5e-06 0.00012 14.1 0.0 3 44 162 200 160 225 0.80 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 IstB_IS21 PF01695.12 178 3.6e-05 15.8 0.0 1 1 9.4e-07 7.2e-05 14.8 0.0 43 79 155 190 128 206 0.82 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 3HCDH_N PF02737.13 180 0.012 7.7 6.6 1 2 0.017 0.66 2.1 2.8 1 30 100 129 100 133 0.93 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 3HCDH_N PF02737.13 180 0.012 7.7 6.6 2 2 0.0006 0.023 6.9 0.1 2 36 273 307 272 359 0.75 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_29 - 234 3HCDH_N PF02737.13 180 0.017 7.3 9.4 1 2 0.0011 0.04 6.0 1.4 3 55 12 57 6 74 0.56 # 17982 # 18683 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 1_29 - 234 3HCDH_N PF02737.13 180 0.017 7.3 9.4 2 2 0.0027 0.1 4.7 0.7 45 80 142 177 113 210 0.63 # 17982 # 18683 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.430 4_7 - 562 GIDA PF01134.17 392 2e-06 19.4 5.3 1 2 2.6e-08 2e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 GIDA PF01134.17 392 2e-06 19.4 5.3 2 2 0.01 0.77 1.0 0.3 349 385 390 426 376 430 0.79 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_10 - 58 SSB PF00436.20 104 2e-13 42.7 0.0 1 1 5.6e-15 2.1e-13 42.6 0.0 1 34 6 39 6 55 0.88 # 6227 # 6400 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_9 - 92 SSB PF00436.20 104 4.1e-09 28.8 0.1 1 1 1.3e-10 5e-09 28.5 0.1 72 99 1 28 1 36 0.88 # 5895 # 6170 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.591 2_9 - 1073 UvrD_C_2 PF13538.1 104 1.2e-15 50.1 0.6 1 1 6.3e-17 4.8e-15 48.2 0.2 3 102 801 900 799 902 0.78 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 4_7 - 562 Pyr_redox_2 PF07992.9 201 5.4e-43 139.7 0.0 1 1 1.6e-44 1.2e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 334 AAA_2 PF07724.9 171 7.1e-05 15.3 0.1 1 1 1.7e-06 0.00013 14.4 0.1 2 49 158 203 157 216 0.84 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_8 - 511 DUF87 PF01935.12 229 6.5e-10 31.7 0.0 1 1 2.7e-11 1e-09 31.0 0.0 12 78 118 178 110 260 0.78 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 334 DUF87 PF01935.12 229 2.8e-05 16.5 0.0 1 1 1.5e-06 5.8e-05 15.5 0.0 26 61 162 196 156 208 0.84 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 NB-ARC PF00931.17 287 0.00055 11.3 0.0 1 1 1.6e-05 0.0013 10.1 0.0 12 42 152 182 144 214 0.80 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 AAA_22 PF13401.1 131 9.6e-07 21.5 0.0 1 1 3.4e-08 2.6e-06 20.1 0.0 3 68 158 217 155 246 0.78 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 Trp_halogenase PF04820.9 454 0.0034 8.5 3.3 1 1 8.1e-05 0.0061 7.6 3.3 1 47 100 143 100 151 0.76 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 NAD_binding_7 PF13241.1 103 2.9e-06 20.0 1.2 1 2 1.9e-05 0.0014 11.4 0.2 9 38 100 129 96 164 0.90 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 NAD_binding_7 PF13241.1 103 2.9e-06 20.0 1.2 2 2 0.00049 0.037 6.9 0.1 8 45 271 314 264 382 0.66 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_28 - 858 AAA_17 PF13207.1 121 0.00072 12.9 0.9 1 2 0.00064 0.049 7.0 0.0 3 19 490 506 489 559 0.82 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_28 - 858 AAA_17 PF13207.1 121 0.00072 12.9 0.9 2 2 0.031 2.4 1.6 0.1 50 87 617 650 587 730 0.65 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_36 - 334 MobB PF03205.9 140 4.4e-06 19.0 0.2 1 1 1.7e-07 1.3e-05 17.5 0.0 2 38 161 196 160 208 0.81 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_9 - 1073 PhoH PF02562.11 205 8.1e-10 30.7 2.2 1 2 5.7e-07 2.2e-05 16.3 0.3 5 40 482 518 479 531 0.82 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_9 - 1073 PhoH PF02562.11 205 8.1e-10 30.7 2.2 2 2 3.7e-06 0.00014 13.6 0.1 120 162 565 608 561 642 0.80 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_36 - 334 PhoH PF02562.11 205 1.8e-05 16.5 0.0 1 1 9.2e-07 3.5e-05 15.6 0.0 9 39 149 179 142 210 0.77 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 T2SE PF00437.15 272 3e-53 172.9 0.1 1 1 9.2e-55 3.5e-53 172.7 0.1 3 270 11 311 9 313 0.92 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_13 - 210 T2SE PF00437.15 272 1e-05 17.1 0.0 1 1 3.2e-07 1.2e-05 16.8 0.0 114 222 58 201 16 207 0.76 # 8485 # 9114 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 1_36 - 334 Zeta_toxin PF06414.7 201 2.1e-06 19.4 0.0 1 1 4.7e-08 3.6e-06 18.7 0.0 11 51 154 194 144 206 0.82 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 NAD_binding_8 PF13450.1 68 5.2e-05 15.8 1.2 1 1 6.9e-07 5.2e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 334 Arch_ATPase PF01637.13 234 2.6e-05 16.5 0.0 1 1 6.1e-07 4.6e-05 15.7 0.0 16 69 157 207 144 248 0.86 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 AAA_16 PF13191.1 185 3.4e-07 22.9 0.0 1 1 2.9e-08 7.3e-07 21.8 0.0 24 51 159 186 138 211 0.81 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_28 - 858 AAA_16 PF13191.1 185 8.2e-05 15.2 0.1 1 2 0.00021 0.0054 9.2 0.0 25 47 487 506 474 558 0.76 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_28 - 858 AAA_16 PF13191.1 185 8.2e-05 15.2 0.1 2 2 0.024 0.62 2.5 0.0 117 170 657 712 621 719 0.79 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 2_8 - 511 AAA_16 PF13191.1 185 0.00061 12.3 0.2 1 1 0.00016 0.0041 9.6 0.2 25 52 127 158 107 378 0.62 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_13 - 210 AAA_23 PF13476.1 202 0.00056 12.8 0.0 1 1 1.8e-05 0.00068 12.5 0.0 16 47 74 120 50 198 0.66 # 8485 # 9114 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 2_8 - 511 AAA_23 PF13476.1 202 0.00081 12.2 1.9 1 1 4.2e-05 0.0016 11.3 1.8 23 43 130 151 126 264 0.88 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 334 AAA_18 PF13238.1 129 7.7e-05 15.5 0.0 1 1 2.4e-06 0.00018 14.4 0.0 1 28 162 194 162 216 0.76 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_5 - 239 CbiA PF01656.18 195 1.3e-07 23.7 0.9 1 1 3.9e-07 3e-05 16.0 0.9 3 167 5 144 3 170 0.69 # 1468 # 2184 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_17 - 111 Cytidylate_kin PF02224.13 158 6.9e-05 14.8 0.1 1 1 1.2e-06 9.2e-05 14.4 0.1 125 157 5 37 2 38 0.90 # 10698 # 11030 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.399 2_8 - 511 AAA_14 PF13173.1 128 0.00038 12.9 0.1 1 2 0.00027 0.021 7.3 0.0 7 28 131 155 127 212 0.85 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 2_8 - 511 AAA_14 PF13173.1 128 0.00038 12.9 0.1 2 2 0.0076 0.58 2.6 0.0 60 77 342 370 302 397 0.60 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 2_7 - 141 Rossmann-like PF10727.4 127 0.00011 14.5 0.0 1 1 2e-06 0.00015 14.0 0.0 78 111 73 106 45 115 0.85 # 3094 # 3516 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 4_7 - 562 HI0933_like PF03486.9 409 3.3e-09 28.1 5.0 1 2 4.3e-07 3.2e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 HI0933_like PF03486.9 409 3.3e-09 28.1 5.0 2 2 1.7e-06 0.00013 13.0 0.0 83 163 286 362 281 379 0.85 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_28 - 858 AAA_29 PF13555.1 62 2.5e-05 16.3 0.0 1 1 1.5e-06 5.7e-05 15.2 0.0 23 41 487 504 475 508 0.86 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_36 - 334 AAA_29 PF13555.1 62 6.9e-05 14.9 0.0 1 1 4.8e-06 0.00018 13.6 0.0 22 53 158 189 149 197 0.83 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 FAD_binding_2 PF00890.19 417 7.2e-07 20.8 5.3 1 3 9.5e-09 7.2e-07 20.8 5.3 2 32 101 131 100 138 0.91 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 FAD_binding_2 PF00890.19 417 7.2e-07 20.8 5.3 2 3 0.034 2.6 -0.8 0.2 142 204 311 366 286 382 0.67 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 FAD_binding_2 PF00890.19 417 7.2e-07 20.8 5.3 3 3 0.0019 0.14 3.4 0.1 373 402 374 405 368 419 0.86 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Thi4 PF01946.12 230 0.0002 13.0 0.4 1 1 6.3e-06 0.00048 11.7 0.4 19 70 100 150 95 158 0.88 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 334 Sigma54_activat PF00158.21 168 7.5e-06 18.0 0.0 1 1 1.8e-07 1.4e-05 17.2 0.0 16 67 153 204 140 213 0.80 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 0.1 1 3 1.5e-06 0.00011 14.8 0.0 164 199 95 130 48 134 0.85 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 0.1 2 3 5.8e-09 4.4e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox_3 PF13738.1 203 1.1e-18 60.5 0.1 3 3 5.6e-08 4.3e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 334 MMR_HSR1 PF01926.18 116 0.00062 12.3 0.0 1 1 1.8e-05 0.0014 11.2 0.0 2 24 162 189 161 244 0.73 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 DUF258 PF03193.11 161 8.6e-05 14.3 0.0 1 1 2.2e-06 0.00016 13.4 0.0 30 97 154 219 135 229 0.74 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_8 - 511 TraG-D_C PF12696.2 128 6.3e-21 67.1 0.0 1 1 1.5e-22 1.1e-20 66.3 0.0 1 127 352 474 352 475 0.83 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 334 AAA_33 PF13671.1 143 0.00017 14.0 0.0 1 1 4.1e-06 0.00031 13.2 0.0 2 62 162 236 161 249 0.81 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 XdhC_C PF13478.1 136 0.00063 12.6 1.0 1 2 0.08 6.1 -0.3 0.1 1 29 101 129 101 163 0.86 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 XdhC_C PF13478.1 136 0.00063 12.6 1.0 2 2 6.9e-05 0.0052 9.6 0.1 1 66 273 351 273 371 0.64 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_9 - 1073 AAA_30 PF13604.1 196 4.8e-50 162.4 4.5 1 1 1.3e-51 4.8e-50 162.4 4.5 1 186 480 657 480 665 0.97 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_36 - 334 AAA_30 PF13604.1 196 4.7e-05 15.5 0.1 1 1 2e-06 7.7e-05 14.8 0.1 13 65 155 206 143 228 0.77 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 FtsK_SpoIIIE PF01580.13 205 6e-07 21.6 0.0 1 1 3.7e-08 9.4e-07 21.0 0.0 27 65 148 186 120 207 0.71 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_28 - 858 FtsK_SpoIIIE PF01580.13 205 6.3e-06 18.3 0.0 1 1 6.7e-07 1.7e-05 16.9 0.0 21 64 457 512 441 522 0.80 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 2_8 - 511 FtsK_SpoIIIE PF01580.13 205 0.00088 11.3 0.0 1 1 8.5e-05 0.0022 10.0 0.0 29 64 111 152 95 164 0.76 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 3_1 - 108 AAA_35 PF14516.1 331 7.6e-05 13.9 0.8 1 2 1.8e-06 0.00014 13.1 0.6 184 226 47 91 40 97 0.75 # 1 # 324 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 3_1 - 108 AAA_35 PF14516.1 331 7.6e-05 13.9 0.8 2 2 0.0017 0.13 3.3 0.1 180 214 72 106 69 107 0.91 # 1 # 324 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_36 - 334 ABC_tran PF00005.22 137 2e-07 23.9 0.0 1 1 4.3e-09 3.2e-07 23.2 0.0 8 51 156 200 152 260 0.86 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 K_oxygenase PF13434.1 341 2.5e-06 19.0 0.2 1 3 0.0041 0.31 2.3 0.2 187 223 95 129 86 132 0.74 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 K_oxygenase PF13434.1 341 2.5e-06 19.0 0.2 2 3 2.9e-06 0.00022 12.7 0.0 130 231 217 309 200 339 0.79 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 K_oxygenase PF13434.1 341 2.5e-06 19.0 0.2 3 3 0.022 1.6 -0.0 0.0 139 160 345 366 314 376 0.63 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 334 AAA_19 PF13245.1 76 5.9e-05 15.4 0.1 1 1 1.8e-06 0.00014 14.2 0.1 6 47 155 191 151 221 0.80 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_9 - 1073 Helicase_RecD PF05127.9 177 0.0018 10.4 5.9 1 1 8.8e-06 0.00067 11.8 1.3 5 115 457 589 455 603 0.58 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_28 - 858 AAA_10 PF12846.2 304 1.1e-31 102.9 0.0 1 1 1.4e-32 3.7e-31 101.1 0.0 2 293 487 763 486 770 0.88 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 2_8 - 511 AAA_10 PF12846.2 304 9.3e-12 37.4 0.0 1 2 2.3e-08 5.9e-07 21.6 0.0 3 47 128 173 126 216 0.86 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 2_8 - 511 AAA_10 PF12846.2 304 9.3e-12 37.4 0.0 2 2 6.2e-06 0.00016 13.7 0.0 214 286 329 416 308 433 0.67 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 334 AAA_10 PF12846.2 304 0.00015 13.8 0.0 1 1 1.2e-05 0.0003 12.8 0.0 3 28 161 186 159 218 0.74 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 FAD_oxidored PF12831.2 428 4.5e-07 21.7 3.8 1 2 5.9e-09 4.5e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 FAD_oxidored PF12831.2 428 4.5e-07 21.7 3.8 2 2 0.01 0.76 1.2 0.0 84 120 305 341 261 364 0.71 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 DAO PF01266.19 358 5e-12 37.8 7.5 1 2 1.9e-08 1.4e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 DAO PF01266.19 358 5e-12 37.8 7.5 2 2 7.7e-09 5.8e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 334 ResIII PF04851.10 184 8.4e-05 15.0 0.0 1 1 2.1e-06 0.00016 14.1 0.0 22 58 141 194 100 214 0.73 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_9 - 1073 Viral_helicase1 PF01443.13 234 2.9e-15 48.9 1.8 1 2 1e-07 7.9e-06 18.0 0.0 3 117 502 619 500 667 0.67 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_9 - 1073 Viral_helicase1 PF01443.13 234 2.9e-15 48.9 1.8 2 2 3.4e-11 2.6e-09 29.4 0.7 165 234 833 903 780 903 0.68 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_36 - 334 DUF2075 PF09848.4 352 2e-05 16.1 0.0 1 1 3.7e-07 2.8e-05 15.7 0.0 1 58 159 213 159 240 0.70 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 DEAD PF00270.24 169 1.3e-05 17.2 0.1 1 1 3e-07 2.3e-05 16.5 0.1 11 70 156 212 147 232 0.79 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 Pyr_redox PF00070.22 80 7.2e-20 63.8 5.4 1 2 1.2e-06 9.4e-05 15.4 1.5 2 31 101 130 100 132 0.95 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox PF00070.22 80 7.2e-20 63.8 5.4 2 2 3.2e-17 2.4e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_8 - 511 TrwB_AAD_bind PF10412.4 386 5.8e-110 359.9 0.0 1 1 2.7e-111 6.8e-110 359.7 0.0 1 385 112 493 112 494 0.95 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_28 - 858 TrwB_AAD_bind PF10412.4 386 6.4e-06 17.5 0.1 1 1 1e-06 2.6e-05 15.5 0.0 16 51 487 522 480 531 0.92 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_36 - 334 TrwB_AAD_bind PF10412.4 386 1.6e-05 16.1 0.0 1 1 1e-06 2.6e-05 15.4 0.0 13 49 157 192 149 201 0.82 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 Sigma54_activ_2 PF14532.1 138 2.8e-07 23.2 0.0 1 1 6.9e-09 5.2e-07 22.3 0.0 14 68 152 206 145 213 0.91 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_8 - 511 T4SS-DNA_transf PF02534.9 469 3.3e-16 51.4 0.0 1 2 0.034 2.5 -1.1 0.0 46 86 128 171 95 174 0.73 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 2_8 - 511 T4SS-DNA_transf PF02534.9 469 3.3e-16 51.4 0.0 2 2 1.6e-17 1.2e-15 49.4 0.0 250 440 300 489 297 503 0.88 # 3516 # 5048 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_36 - 334 Pox_A32 PF04665.7 241 0.00024 13.0 0.0 1 1 5.5e-06 0.00042 12.2 0.0 14 44 160 190 149 211 0.82 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_9 - 1073 PIF1 PF05970.9 364 2e-05 16.1 0.2 1 2 6.8e-06 0.00026 12.5 0.1 5 66 484 541 480 604 0.80 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_9 - 1073 PIF1 PF05970.9 364 2e-05 16.1 0.2 2 2 0.019 0.73 1.1 0.0 334 362 798 825 785 827 0.87 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_36 - 334 PIF1 PF05970.9 364 0.00059 11.3 0.0 1 1 2.6e-05 0.00098 10.6 0.0 21 57 158 194 150 208 0.80 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 RNA_helicase PF00910.17 107 0.00035 13.3 0.0 1 1 1.4e-05 0.0011 11.7 0.0 1 24 162 185 162 215 0.79 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_36 - 334 UPF0079 PF02367.12 123 9e-06 17.9 0.0 1 1 2.3e-07 1.7e-05 17.0 0.0 11 45 155 189 145 193 0.85 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 4_7 - 562 AlaDh_PNT_C PF01262.16 168 6.5e-07 21.6 2.3 1 2 3.9e-06 0.0003 12.9 0.3 16 50 94 128 80 131 0.87 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 AlaDh_PNT_C PF01262.16 168 6.5e-07 21.6 2.3 2 2 0.00012 0.0088 8.1 0.1 19 60 269 310 260 341 0.84 # 3134 # 4819 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_36 - 334 NACHT PF05729.7 166 2.2e-05 16.7 0.0 1 1 1.2e-06 4.7e-05 15.6 0.0 1 24 160 183 160 188 0.90 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_28 - 858 NACHT PF05729.7 166 0.00069 11.8 0.1 1 2 0.00049 0.019 7.2 0.1 3 19 489 505 488 514 0.86 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_28 - 858 NACHT PF05729.7 166 0.00069 11.8 0.1 2 2 0.022 0.84 1.8 0.0 100 161 728 789 692 794 0.78 # 15393 # 17966 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.474 1_36 - 334 AAA_25 PF13481.1 194 0.00015 13.8 0.0 1 1 7e-06 0.00053 11.9 0.0 20 58 147 184 129 210 0.78 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 2_9 - 1073 Herpes_Helicase PF02689.9 819 1.7e-05 15.2 0.4 1 3 0.0011 0.085 3.0 0.0 169 209 538 578 490 585 0.85 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_9 - 1073 Herpes_Helicase PF02689.9 819 1.7e-05 15.2 0.4 2 3 0.041 3.1 -2.2 0.0 397 454 639 704 625 709 0.67 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_9 - 1073 Herpes_Helicase PF02689.9 819 1.7e-05 15.2 0.4 3 3 1.5e-05 0.0011 9.2 0.0 736 782 851 898 829 917 0.77 # 5053 # 8271 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_36 - 334 AAA_5 PF07728.9 139 2.1e-05 16.8 0.0 1 1 6.6e-07 5e-05 15.6 0.0 2 31 162 192 161 221 0.77 # 22985 # 23986 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c4dcdce9-6b4b-44ef-b925-4e7f84286c01 # Target file: checkm_output/bins/pm1415/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1415/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c4dcdce9-6b4b-44ef-b925-4e7f84286c01 checkm_output/bins/pm1415/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:34 2020 # [ok]