# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_4 - 384 Seryl_tRNA_N PF02403.17 108 0.0013 11.6 11.6 1 3 0.0022 0.22 4.5 0.1 38 104 84 151 63 155 0.89 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_4 - 384 Seryl_tRNA_N PF02403.17 108 0.0013 11.6 11.6 2 3 0.00077 0.075 6.0 0.1 27 59 182 214 170 236 0.85 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_4 - 384 Seryl_tRNA_N PF02403.17 108 0.0013 11.6 11.6 3 3 0.00044 0.043 6.8 1.6 17 107 254 343 247 344 0.76 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_55 - 145 SSB PF00436.20 104 3.2e-32 103.4 0.2 1 1 3.8e-34 3.7e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 34179 # 34613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_10 - 388 DUF87 PF01935.12 229 8.9e-05 15.2 0.0 1 1 1.8e-06 0.00018 14.2 0.0 28 45 157 174 155 188 0.89 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 AAA_22 PF13401.1 131 2.8e-06 20.4 0.0 1 1 1.4e-07 7e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_23 - 1017 AAA_22 PF13401.1 131 0.00024 14.1 0.0 1 1 1.7e-05 0.00082 12.4 0.0 8 70 492 558 486 594 0.69 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_10 - 388 ATP_bind_1 PF03029.12 238 0.0008 11.8 0.0 1 1 1.3e-05 0.0013 11.2 0.0 1 25 157 181 157 191 0.84 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_23 - 1017 AAA_17 PF13207.1 121 4.5e-05 17.2 0.1 1 1 3.9e-06 0.00038 14.2 0.0 3 27 492 522 492 582 0.70 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_10 - 388 Miro PF08477.8 119 0.00093 12.6 0.0 1 1 2.1e-05 0.0021 11.5 0.0 4 28 157 186 156 220 0.72 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 MobB PF03205.9 140 0.00049 12.7 0.0 1 1 1e-05 0.001 11.7 0.0 4 25 156 177 154 190 0.85 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 T2SE PF00437.15 272 2.8e-23 75.0 0.0 1 1 4.6e-25 4.5e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 SMC_N PF02463.14 220 0.0011 11.0 0.0 1 1 2.1e-05 0.0021 10.2 0.0 26 50 154 178 147 195 0.81 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 AAA_16 PF13191.1 185 0.00086 12.2 0.0 1 1 1.8e-05 0.0017 11.2 0.0 26 50 154 178 140 211 0.85 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 AAA_23 PF13476.1 202 1.9e-06 21.2 0.1 1 1 4.2e-08 4.1e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_23 - 1017 AAA_18 PF13238.1 129 8e-05 15.9 1.2 1 1 3.7e-06 0.00036 13.7 0.0 2 19 492 509 492 568 0.77 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 3_4 - 384 AAA_13 PF13166.1 712 0.00092 10.6 17.6 1 2 1.2e-05 0.0011 10.2 2.7 365 468 109 214 61 229 0.52 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_4 - 384 AAA_13 PF13166.1 712 0.00092 10.6 17.6 2 2 0.00038 0.038 5.2 8.5 321 439 249 377 207 383 0.75 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_10 - 388 KaiC PF06745.8 227 0.00082 11.4 0.0 1 1 1.5e-05 0.0014 10.6 0.0 14 59 147 191 137 201 0.76 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 AAA_29 PF13555.1 62 8.7e-06 18.1 0.1 1 1 2.2e-07 2.2e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 Ribosomal_S5 PF00333.15 67 3e-05 16.7 0.1 1 2 0.00091 0.089 5.5 0.0 26 45 84 103 76 114 0.83 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 Ribosomal_S5 PF00333.15 67 3e-05 16.7 0.1 2 2 0.00012 0.011 8.4 0.0 21 54 242 274 230 278 0.91 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_6 - 696 TraG-D_C PF12696.2 128 0.00013 14.7 0.1 1 1 2.4e-06 0.00023 13.9 0.1 3 94 437 524 435 556 0.78 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_10 - 388 FtsK_SpoIIIE PF01580.13 205 9.7e-05 14.8 0.0 1 1 1.9e-06 0.00019 13.8 0.0 41 59 155 173 129 184 0.85 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 ABC_tran PF00005.22 137 0.00014 15.1 0.0 1 1 2.7e-06 0.00026 14.2 0.0 16 33 157 174 149 217 0.83 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_23 - 1017 AAA_19 PF13245.1 76 0.00049 12.8 0.0 1 1 1.6e-05 0.0016 11.1 0.0 14 31 492 508 481 518 0.90 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_23 - 1017 AAA_10 PF12846.2 304 8.5e-41 133.1 0.0 1 1 5.5e-42 1.8e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_6 - 696 AAA_10 PF12846.2 304 6.2e-10 31.8 0.0 1 1 2.8e-11 9.2e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_10 - 388 AAA_10 PF12846.2 304 1.4e-06 20.8 0.0 1 1 2.5e-07 8.1e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_23 - 1017 DUF2075 PF09848.4 352 0.00034 12.5 0.2 1 1 1.1e-05 0.0011 10.8 0.0 5 22 492 509 489 533 0.86 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_45 - 287 Methyltransf_27 PF13708.1 194 1.9e-69 225.9 0.0 1 1 3.3e-71 3.2e-69 225.2 0.0 2 194 89 282 88 282 0.98 # 29649 # 30509 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_6 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 1 3 1.7e-05 0.0017 9.8 0.0 16 36 134 154 125 158 0.88 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_6 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 2 3 9.3e-05 0.0091 7.4 0.1 93 140 235 281 229 303 0.80 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_6 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 3 3 0.083 8.1 -2.3 0.0 293 323 482 512 405 546 0.58 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_25 - 136 Methyltransf_23 PF13489.1 161 0.00073 12.1 0.0 1 1 9e-06 0.00088 11.9 0.0 104 158 40 97 15 100 0.64 # 18025 # 18432 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.517 2_10 - 388 GTP_EFTU PF00009.22 188 0.001 11.4 0.0 1 1 2e-05 0.0019 10.5 0.0 8 34 157 183 155 195 0.87 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 RNA_helicase PF00910.17 107 0.0011 12.1 0.0 1 1 2.5e-05 0.0024 10.9 0.0 3 26 157 180 156 197 0.81 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 NACHT PF05729.7 166 0.00033 13.2 0.0 1 1 6.6e-06 0.00065 12.3 0.0 4 29 156 181 154 188 0.83 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 AAA_25 PF13481.1 194 5.7e-06 18.7 0.0 1 1 1.3e-07 1.3e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1bff709b-d03a-4a4d-a560-43f0721acb4c # Target file: checkm_output/bins/pm1410/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1410/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1bff709b-d03a-4a4d-a560-43f0721acb4c checkm_output/bins/pm1410/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:32 2020 # [ok]