# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 354 Methyltransf_12 PF08242.7 99 8.2e-05 13.3 0.0 1 2 5.3e-05 0.00074 10.2 0.0 2 71 6 74 5 82 0.87 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_12 PF08242.7 99 8.2e-05 13.3 0.0 2 2 0.084 1.2 -0.1 0.0 29 78 152 207 129 224 0.69 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_11 PF08241.7 95 2.3e-05 15.0 0.3 1 2 3.6e-05 0.00051 10.7 0.0 3 54 7 56 5 75 0.77 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_11 PF08241.7 95 2.3e-05 15.0 0.3 2 2 0.096 1.3 -0.2 0.1 68 86 295 313 289 314 0.88 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 DNA_methylase PF00145.12 335 3e-80 259.8 0.0 1 1 5e-81 3.5e-80 259.6 0.0 2 334 3 350 2 351 0.80 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_5 - 331 DNA_methylase PF00145.12 335 5.1e-79 255.8 0.2 1 2 4.5e-64 3.1e-63 203.9 0.3 2 194 5 204 4 238 0.87 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_5 - 331 DNA_methylase PF00145.12 335 5.1e-79 255.8 0.2 2 2 2.1e-17 1.5e-16 50.5 0.0 279 334 242 316 213 317 0.75 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_5 - 331 TRM PF02005.11 377 0.0001 11.4 0.1 1 2 2.6e-05 0.00037 9.5 0.0 74 96 36 58 30 74 0.82 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_5 - 331 TRM PF02005.11 377 0.0001 11.4 0.1 2 2 0.045 0.63 -1.1 0.0 289 352 111 153 100 187 0.52 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_3 - 354 Methyltransf_26 PF13659.1 117 1.3e-08 25.1 0.0 1 1 1.7e-09 2.4e-08 24.2 0.0 3 108 3 111 2 119 0.73 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 MTS PF05175.9 170 6e-07 19.1 0.0 1 1 7.1e-08 9.9e-07 18.4 0.0 34 108 3 79 1 98 0.90 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Cons_hypoth95 PF03602.10 183 3.8e-05 13.3 0.0 1 1 4.6e-06 6.4e-05 12.5 0.0 45 123 3 78 1 92 0.83 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Eco57I PF07669.6 106 5.5e-05 13.7 0.0 1 1 9.8e-06 0.00014 12.4 0.0 3 50 70 115 68 137 0.87 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_31 PF13847.1 152 2.3e-06 17.4 0.3 1 1 3.8e-07 5.3e-06 16.2 0.2 6 83 3 79 2 153 0.69 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 PrmA PF06325.8 295 3.4e-05 13.2 0.0 1 1 3.5e-06 4.8e-05 12.6 0.0 164 207 3 46 1 75 0.81 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_15 PF09445.5 164 1.3e-09 27.9 0.0 1 1 2e-10 2.8e-09 26.9 0.0 4 86 4 85 2 105 0.84 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6d90a5c4-a975-4def-b53b-3bb4d176cf83 # Target file: checkm_output/bins/pm1400/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1400/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6d90a5c4-a975-4def-b53b-3bb4d176cf83 checkm_output/bins/pm1400/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:23 2020 # [ok]