# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 65 cobW PF02492.14 178 2.8e-05 13.1 0.4 1 1 3.4e-06 3e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 6489 # 6683 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_8 - 260 IstB_IS21 PF01695.12 178 4.1e-74 237.3 0.1 1 2 0.049 0.44 -0.6 0.0 64 97 25 57 24 61 0.64 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 IstB_IS21 PF01695.12 178 4.1e-74 237.3 0.1 2 2 9.8e-75 8.8e-74 236.2 0.1 1 178 56 235 56 235 0.98 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_22 PF13401.1 131 1.4e-07 21.3 0.2 1 2 2.2e-05 0.0002 11.0 0.0 5 21 103 119 99 131 0.83 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_22 PF13401.1 131 1.4e-07 21.3 0.2 2 2 0.00036 0.0033 7.1 0.0 88 103 154 181 126 203 0.66 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 PhoH PF02562.11 205 9.4e-09 24.2 0.1 1 1 3.6e-09 3.2e-08 22.5 0.0 11 48 94 131 83 159 0.83 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AFG1_ATPase PF03969.11 362 6.5e-06 14.6 0.2 1 1 2.8e-06 2.5e-05 12.6 0.2 63 216 103 254 43 259 0.72 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_7 - 65 Phe_tRNA-synt_N PF02912.13 73 2.6e-05 13.5 0.1 1 1 4.4e-06 4e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 6489 # 6683 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_8 - 260 Arch_ATPase PF01637.13 234 8.4e-05 11.8 0.1 1 2 3.4e-05 0.00031 9.9 0.0 8 37 90 119 87 140 0.79 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 Arch_ATPase PF01637.13 234 8.4e-05 11.8 0.1 2 2 0.071 0.64 -0.9 0.0 121 150 167 192 144 203 0.68 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_16 PF13191.1 185 5.9e-06 15.9 1.1 1 2 0.052 0.47 -0.1 0.2 115 142 18 46 3 97 0.57 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_16 PF13191.1 185 5.9e-06 15.9 1.1 2 2 3e-06 2.7e-05 13.7 0.1 21 41 99 119 86 151 0.78 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_14 PF13173.1 128 1.1e-07 21.4 0.0 1 1 2.3e-08 2e-07 20.5 0.0 2 96 102 203 101 221 0.67 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_29 PF13555.1 62 6.7e-05 12.0 0.0 1 1 1.4e-05 0.00013 11.1 0.0 19 59 98 139 89 141 0.72 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA PF00004.24 132 1.7e-08 24.3 0.0 1 1 3.2e-09 2.9e-08 23.5 0.0 1 74 105 180 105 214 0.77 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 Bac_DnaA PF00308.13 219 9.6e-11 31.2 0.0 1 1 1.6e-11 1.4e-10 30.6 0.0 37 136 105 202 75 207 0.85 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 Sigma54_activat PF00158.21 168 1.2e-05 14.3 0.1 1 1 8.2e-06 7.4e-05 11.8 0.1 18 53 98 133 82 198 0.72 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 DUF258 PF03193.11 161 1.2e-06 17.3 0.0 1 1 2e-07 1.8e-06 16.8 0.0 21 78 88 157 70 192 0.71 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 NTPase_1 PF03266.10 168 2.1e-05 13.8 0.1 1 2 0.0016 0.015 4.5 0.1 2 30 105 133 104 153 0.83 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 NTPase_1 PF03266.10 168 2.1e-05 13.8 0.1 2 2 0.00025 0.0022 7.2 0.0 88 112 157 181 144 204 0.72 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 ABC_tran PF00005.22 137 1.3e-05 15.0 0.3 1 2 1.2e-05 0.00011 12.1 0.0 8 30 99 121 93 136 0.86 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 ABC_tran PF00005.22 137 1.3e-05 15.0 0.3 2 2 0.051 0.46 0.3 0.0 107 134 143 172 126 174 0.74 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 RuvB_N PF05496.7 234 3.3e-05 12.5 0.0 1 1 6.5e-06 5.8e-05 11.7 0.0 50 119 102 182 92 190 0.65 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_19 PF13245.1 76 3.8e-05 13.0 0.0 1 1 1.1e-05 9.5e-05 11.7 0.0 10 37 103 129 96 154 0.81 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_10 PF12846.2 304 7.1e-07 18.3 0.7 1 3 0.028 0.25 0.1 0.0 127 169 38 82 8 95 0.68 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_10 PF12846.2 304 7.1e-07 18.3 0.7 2 3 9.5e-07 8.6e-06 14.8 0.1 1 33 102 134 102 171 0.89 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_10 PF12846.2 304 7.1e-07 18.3 0.7 3 3 0.024 0.22 0.3 0.0 202 247 142 192 134 202 0.68 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 ResIII PF04851.10 184 3.3e-05 13.3 0.0 1 2 6.9e-05 0.00062 9.1 0.0 8 50 89 127 49 135 0.78 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 ResIII PF04851.10 184 3.3e-05 13.3 0.0 2 2 0.0088 0.079 2.3 0.0 112 163 131 181 127 202 0.72 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_25 PF13481.1 194 2.2e-06 16.6 0.0 1 1 4.1e-07 3.7e-06 15.9 0.0 22 58 90 127 71 183 0.79 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_28 PF13521.1 163 0.00011 11.7 1.8 1 2 0.063 0.57 -0.4 0.1 84 110 35 63 3 82 0.67 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_28 PF13521.1 163 0.00011 11.7 1.8 2 2 3e-05 0.00027 10.4 0.2 1 43 104 151 104 172 0.70 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_5 PF07728.9 139 2.6e-06 16.7 0.3 1 2 3.6e-06 3.3e-05 13.2 0.2 1 74 104 173 104 180 0.72 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_5 PF07728.9 139 2.6e-06 16.7 0.3 2 2 0.053 0.48 -0.3 0.0 90 123 225 258 218 259 0.63 # 7720 # 8499 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cf8fb0cd-a2e3-4191-aad9-d748f3deaf52 # Target file: checkm_output/bins/pm1393/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1393/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cf8fb0cd-a2e3-4191-aad9-d748f3deaf52 checkm_output/bins/pm1393/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:17 2020 # [ok]