# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_45 - 266 UPF0020 PF01170.13 180 0.00048 12.1 0.0 1 1 1.1e-05 0.00074 11.4 0.0 30 94 175 238 144 250 0.73 # 43821 # 44618 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_54 - 284 cobW PF02492.14 178 8.6e-05 14.4 0.0 1 2 2.1e-05 0.0014 10.4 0.0 10 40 29 60 21 109 0.85 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 cobW PF02492.14 178 8.6e-05 14.4 0.0 2 2 0.007 0.47 2.2 0.0 65 106 124 168 114 276 0.71 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 151 FeoB_N PF02421.13 156 0.00058 11.5 0.4 1 2 1.7e-05 0.0012 10.5 0.2 2 25 18 41 17 70 0.80 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_12 - 151 FeoB_N PF02421.13 156 0.00058 11.5 0.4 2 2 0.048 3.2 -0.7 0.0 73 91 66 84 35 117 0.60 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_54 - 284 MipZ PF09140.6 261 1.7e-12 39.3 0.3 1 2 1.8e-10 1.2e-08 26.7 0.0 2 59 20 76 19 106 0.87 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 MipZ PF09140.6 261 1.7e-12 39.3 0.3 2 2 1.2e-05 0.00081 10.8 0.0 85 130 130 175 108 217 0.77 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 YhjQ PF06564.7 244 1.7e-09 29.7 0.1 1 2 9.3e-07 6.2e-05 14.7 0.1 3 37 20 54 18 63 0.91 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 YhjQ PF06564.7 244 1.7e-09 29.7 0.1 2 2 1.5e-05 0.001 10.8 0.0 74 231 102 270 92 275 0.66 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_9 - 1706 UvrD_C_2 PF13538.1 104 1.9e-08 26.8 0.0 1 1 8.5e-10 5.7e-08 25.3 0.0 3 103 1325 1430 1323 1431 0.72 # 6372 # 11489 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_27 - 871 DUF87 PF01935.12 229 0.00042 12.5 0.0 1 1 1.3e-05 0.00088 11.4 0.0 30 184 489 637 487 674 0.79 # 27086 # 29698 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_9 - 1706 ATP_bind_1 PF03029.12 238 0.00052 11.9 0.1 1 1 2.1e-05 0.0014 10.5 0.0 2 38 987 1023 986 1033 0.92 # 6372 # 11489 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_54 - 284 SRP54 PF00448.17 196 2e-05 16.4 0.1 1 1 8.4e-07 5.6e-05 15.0 0.2 10 39 28 57 19 80 0.88 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 151 AAA_17 PF13207.1 121 3.8e-05 16.9 0.1 1 1 1.2e-06 8.1e-05 15.8 0.1 2 46 19 64 18 114 0.59 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_1 - 370 MobB PF03205.9 140 0.00028 13.0 0.0 1 1 8.2e-06 0.00055 12.0 0.0 4 39 76 110 73 115 0.86 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_54 - 284 LpxK PF02606.9 326 7.6e-05 14.1 0.0 1 1 1.7e-06 0.00011 13.5 0.0 44 72 26 54 7 85 0.80 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 ArsA_ATPase PF02374.10 305 5.3e-07 21.2 0.0 1 1 2.9e-08 1.9e-06 19.4 0.0 5 39 23 57 20 79 0.87 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 151 T2SE PF00437.15 272 6.6e-05 14.2 0.0 1 1 1.5e-06 0.0001 13.6 0.0 122 147 13 35 3 45 0.82 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_54 - 284 Zeta_toxin PF06414.7 201 0.00072 11.0 1.2 1 2 2.3e-05 0.0015 9.9 0.1 23 52 26 57 14 80 0.87 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 Zeta_toxin PF06414.7 201 0.00072 11.0 1.2 2 2 0.045 3 -0.8 0.2 153 195 196 238 189 243 0.80 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 VirC1 PF07015.6 231 1e-07 23.6 0.1 1 2 7.2e-09 4.8e-07 21.4 0.0 3 53 20 70 18 100 0.77 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 VirC1 PF07015.6 231 1e-07 23.6 0.1 2 2 0.034 2.3 -0.5 0.0 83 119 143 184 137 196 0.67 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_54 - 284 Fer4_NifH PF00142.13 273 1.6e-09 29.6 0.2 1 1 3.9e-11 2.6e-09 28.9 0.2 6 51 25 70 19 85 0.89 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_1 - 370 Arch_ATPase PF01637.13 234 0.00066 11.7 0.0 1 1 1.7e-05 0.0011 11.0 0.0 22 59 74 111 71 216 0.73 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_10 - 705 AAA_16 PF13191.1 185 7e-07 21.7 0.0 1 2 1.2e-06 2.7e-05 16.6 0.0 17 55 183 222 178 254 0.87 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_10 - 705 AAA_16 PF13191.1 185 7e-07 21.7 0.0 2 2 0.062 1.4 1.2 0.0 64 119 563 620 543 651 0.75 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_1 - 370 AAA_16 PF13191.1 185 0.00024 13.4 0.0 1 1 2.1e-05 0.00047 12.5 0.0 25 158 73 207 60 220 0.56 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_12 - 151 AAA_16 PF13191.1 185 0.00075 11.8 0.1 1 1 4.5e-05 0.001 11.4 0.1 25 42 17 34 13 116 0.93 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_12 - 151 AAA_18 PF13238.1 129 0.00045 12.9 0.1 1 1 8.6e-06 0.00058 12.5 0.1 1 24 19 41 19 118 0.65 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_54 - 284 CbiA PF01656.18 195 1.7e-32 104.8 0.0 1 1 6.3e-34 2.1e-32 104.4 0.0 1 194 21 245 21 246 0.75 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_1 - 370 CbiA PF01656.18 195 0.00038 12.2 0.0 1 1 2e-05 0.00067 11.4 0.0 10 46 83 118 77 203 0.64 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_1 - 370 KaiC PF06745.8 227 2.5e-11 35.4 0.4 1 1 1.4e-11 9.2e-10 30.3 0.4 1 80 54 130 54 246 0.65 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_12 - 151 AAA_29 PF13555.1 62 0.00026 12.9 0.0 1 1 6.6e-06 0.00044 12.2 0.0 22 40 16 33 2 36 0.85 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_1 - 370 AAA PF00004.24 132 7.8e-05 15.2 0.0 1 1 2.5e-06 0.00017 14.2 0.0 3 105 77 202 76 212 0.61 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_1 - 370 TK PF00265.13 176 0.00014 13.8 0.0 1 1 3.1e-06 0.00021 13.2 0.0 2 84 73 158 72 168 0.69 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_1 - 370 CobU PF02283.11 167 0.0002 13.1 0.0 1 1 5.9e-06 0.0004 12.2 0.0 3 125 77 209 75 218 0.77 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_12 - 151 AAA_8 PF12780.2 268 4.7e-05 14.8 0.0 1 1 8.4e-07 5.7e-05 14.5 0.0 25 61 10 45 5 97 0.75 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_12 - 151 MMR_HSR1 PF01926.18 116 0.00011 14.6 1.3 1 2 0.00013 0.0088 8.4 0.6 2 17 19 34 18 36 0.92 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_12 - 151 MMR_HSR1 PF01926.18 116 0.00011 14.6 1.3 2 2 0.0015 0.1 5.0 0.0 49 99 41 88 35 114 0.60 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_45 - 266 N6_Mtase PF02384.11 311 3.7e-10 31.6 0.0 1 1 8.4e-12 5.6e-10 31.0 0.0 23 120 142 247 126 259 0.84 # 43821 # 44618 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_10 - 705 TraG-D_C PF12696.2 128 9.4e-18 56.7 0.0 1 1 2.9e-19 1.9e-17 55.7 0.0 1 126 425 546 425 548 0.79 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_54 - 284 AAA_31 PF13614.1 157 4.5e-12 38.5 0.0 1 1 1.4e-13 9.6e-12 37.4 0.0 2 154 20 179 19 181 0.81 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_45 - 266 Methyltransf_26 PF13659.1 117 8e-06 18.3 0.0 1 1 4.4e-07 2.9e-05 16.5 0.0 6 62 179 242 176 258 0.82 # 43821 # 44618 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 1706 AAA_30 PF13604.1 196 7.7e-46 148.4 18.9 1 2 2.2e-05 0.0015 10.5 8.2 36 178 446 588 440 606 0.70 # 6372 # 11489 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_9 - 1706 AAA_30 PF13604.1 196 7.7e-46 148.4 18.9 2 2 7.1e-46 4.8e-44 142.6 1.4 2 184 965 1148 964 1154 0.95 # 6372 # 11489 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_12 - 151 FtsK_SpoIIIE PF01580.13 205 0.00061 11.6 0.1 1 2 3.3e-05 0.0022 9.8 0.0 39 55 15 33 2 35 0.76 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_12 - 151 FtsK_SpoIIIE PF01580.13 205 0.00061 11.6 0.1 2 2 0.049 3.3 -0.6 0.0 148 172 113 137 71 146 0.75 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_1 - 370 RecA PF00154.16 323 2.7e-158 518.4 0.7 1 1 4.7e-160 3.1e-158 518.2 0.7 1 320 22 339 22 342 0.99 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_54 - 284 AAA_19 PF13245.1 76 2.6e-05 16.3 0.1 1 1 1.9e-06 6.2e-05 15.1 0.1 20 51 29 56 27 67 0.88 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_12 - 151 AAA_19 PF13245.1 76 0.00067 11.8 0.0 1 1 4.9e-05 0.0017 10.5 0.0 6 31 11 36 6 38 0.75 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_27 - 871 AAA_10 PF12846.2 304 1.8e-39 128.2 0.0 1 1 2.2e-40 3.8e-39 127.2 0.0 1 285 482 761 482 767 0.89 # 27086 # 29698 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_10 - 705 AAA_10 PF12846.2 304 2.6e-14 45.6 0.0 1 1 3.7e-15 6.1e-14 44.4 0.0 3 300 192 504 191 506 0.71 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_12 - 151 AAA_10 PF12846.2 304 3.1e-05 15.8 0.5 1 1 4.4e-06 7.3e-05 14.6 0.5 2 21 17 36 16 133 0.93 # 14030 # 14482 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.371 1_54 - 284 AAA_10 PF12846.2 304 0.00028 12.7 0.0 1 1 1.9e-05 0.00031 12.5 0.0 11 76 29 93 27 252 0.65 # 51116 # 51967 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_10 - 705 DUF815 PF05673.8 250 1.6e-05 16.2 0.8 1 2 9.1e-07 6.1e-05 14.3 0.3 26 85 163 222 145 229 0.87 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_10 - 705 DUF815 PF05673.8 250 1.6e-05 16.2 0.8 2 2 0.052 3.5 -1.3 0.0 119 143 562 586 528 587 0.79 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_10 - 705 TrwB_AAD_bind PF10412.4 386 4e-135 442.6 0.0 1 1 7.6e-137 5.1e-135 442.3 0.0 2 385 177 566 176 567 0.99 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_9 - 1706 AAA_11 PF13086.1 236 3.9e-06 18.9 0.0 1 2 2.9e-05 0.0019 10.1 0.0 3 71 966 1029 964 1050 0.84 # 6372 # 11489 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_9 - 1706 AAA_11 PF13086.1 236 3.9e-06 18.9 0.0 2 2 0.00047 0.031 6.1 0.0 194 230 1059 1098 1039 1100 0.84 # 6372 # 11489 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_10 - 705 T4SS-DNA_transf PF02534.9 469 9e-14 43.1 0.0 1 1 3.5e-14 2.4e-12 38.4 0.0 122 438 258 560 239 593 0.74 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_10 - 705 ArgK PF03308.11 267 0.00043 11.4 0.0 1 1 1.1e-05 0.00072 10.7 0.0 29 62 190 223 169 226 0.89 # 11493 # 13607 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_1 - 370 AAA_25 PF13481.1 194 1.4e-09 29.9 0.5 1 1 7.1e-11 4.8e-09 28.2 0.5 12 173 51 189 41 209 0.70 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_9 - 1706 Gal-3-0_sulfotr PF06990.6 402 0.00055 10.9 0.0 1 1 1.7e-05 0.0011 9.9 0.0 260 344 223 314 131 324 0.84 # 6372 # 11489 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_1 - 370 Rad51 PF08423.6 256 4.1e-13 41.1 0.4 1 1 4.8e-14 3.2e-12 38.2 0.4 16 221 50 239 45 249 0.78 # 171 # 1280 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2f76c08b-74b3-4d5d-b0bf-5544d2c57647 # Target file: checkm_output/bins/pm1386/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1386/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2f76c08b-74b3-4d5d-b0bf-5544d2c57647 checkm_output/bins/pm1386/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:16 2020 # [ok]