# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 209 MipZ PF09140.6 261 2.2e-12 37.8 2.1 1 3 7.8e-11 2.5e-09 27.8 0.2 2 40 3 41 2 57 0.90 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 MipZ PF09140.6 261 2.2e-12 37.8 2.1 2 3 4.5e-05 0.0014 8.9 0.2 94 135 72 112 50 152 0.80 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 MipZ PF09140.6 261 2.2e-12 37.8 2.1 3 3 0.049 1.6 -1.0 0.0 211 235 167 191 140 201 0.71 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 YhjQ PF06564.7 244 1e-06 19.5 0.7 1 2 1.2e-07 3.9e-06 17.6 0.2 1 41 1 41 1 45 0.94 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 YhjQ PF06564.7 244 1e-06 19.5 0.7 2 2 0.031 0.98 -0.1 0.0 112 149 70 107 58 135 0.85 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_31 - 589 DUF87 PF01935.12 229 3.3e-09 28.1 0.0 1 1 1.9e-10 6e-09 27.3 0.0 8 68 167 227 162 339 0.79 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_14 - 916 AAA_22 PF13401.1 131 1.3e-05 16.7 0.0 1 2 1.3e-05 0.00041 11.8 0.0 4 49 534 585 530 634 0.81 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_14 - 916 AAA_22 PF13401.1 131 1.3e-05 16.7 0.0 2 2 0.013 0.42 2.1 0.0 77 111 742 783 737 816 0.71 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_6 - 209 SRP54 PF00448.17 196 6.3e-05 13.7 0.2 1 1 3.4e-06 0.00011 13.0 0.2 10 38 11 39 2 84 0.90 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 AAA_17 PF13207.1 121 5.1e-08 25.1 0.0 1 1 3.9e-09 1.2e-07 23.9 0.0 9 78 12 92 11 151 0.64 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 338 MobB PF03205.9 140 7.9e-06 16.9 0.0 1 1 1e-06 1.6e-05 15.9 0.0 1 36 159 193 159 203 0.89 # 19191 # 20204 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_6 - 209 MobB PF03205.9 140 6.1e-05 14.1 0.0 1 1 9.2e-06 0.00015 12.8 0.0 10 107 12 90 2 102 0.72 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 LpxK PF02606.9 326 5.1e-05 13.6 0.1 1 1 2.1e-06 6.8e-05 13.2 0.1 36 98 2 62 1 104 0.73 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 ArsA_ATPase PF02374.10 305 3e-07 21.0 0.3 1 1 1.8e-08 5.9e-07 20.0 0.1 6 46 7 47 1 63 0.84 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 338 T2SE PF00437.15 272 5.6e-52 167.5 0.0 1 1 2.1e-53 6.7e-52 167.3 0.0 6 244 16 279 11 310 0.92 # 19191 # 20204 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_6 - 209 SKI PF01202.17 158 0.00034 11.8 0.1 1 1 1.8e-05 0.00059 11.0 0.1 2 19 12 29 11 38 0.89 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 VirC1 PF07015.6 231 3.1e-08 24.2 0.0 1 1 1.3e-09 4.3e-08 23.7 0.0 1 149 1 141 1 182 0.79 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 Fer4_NifH PF00142.13 273 0.00021 11.8 0.0 1 1 1.5e-05 0.00049 10.6 0.0 6 39 8 41 2 48 0.88 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 AAA_16 PF13191.1 185 5.4e-05 14.5 0.2 1 2 9.3e-05 0.0015 9.8 0.0 34 69 12 48 10 56 0.84 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 AAA_16 PF13191.1 185 5.4e-05 14.5 0.2 2 2 0.018 0.29 2.4 0.0 52 106 96 152 84 206 0.64 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 916 AAA_16 PF13191.1 185 0.00011 13.5 0.0 1 2 0.00075 0.012 6.9 0.0 19 46 529 556 518 575 0.79 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_14 - 916 AAA_16 PF13191.1 185 0.00011 13.5 0.0 2 2 0.0063 0.1 3.9 0.0 136 167 739 774 607 788 0.68 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_6 - 209 AAA_18 PF13238.1 129 1.9e-05 16.3 0.0 1 1 1.8e-06 5.7e-05 14.8 0.0 8 82 12 85 10 134 0.57 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 CbiA PF01656.18 195 1.8e-31 100.3 0.5 1 1 1.1e-32 3.5e-31 99.4 0.5 1 173 4 156 4 174 0.74 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 338 AAA_29 PF13555.1 62 0.00029 11.7 0.0 1 1 1.9e-05 0.00062 10.7 0.0 22 40 157 175 149 179 0.85 # 19191 # 20204 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_14 - 916 AAA PF00004.24 132 0.00014 13.4 0.0 1 2 0.00018 0.0059 8.1 0.0 3 23 539 559 537 594 0.83 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_14 - 916 AAA PF00004.24 132 0.00014 13.4 0.0 2 2 0.012 0.38 2.3 0.0 60 117 753 799 740 817 0.70 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_31 - 589 TraG-D_C PF12696.2 128 6.8e-12 36.7 0.0 1 1 3.4e-13 1.1e-11 36.1 0.0 1 127 393 519 393 520 0.79 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_6 - 209 AAA_31 PF13614.1 157 1.1e-10 32.9 0.1 1 2 3.2e-10 1e-08 26.6 0.0 1 41 2 42 2 46 0.93 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 AAA_31 PF13614.1 157 1.1e-10 32.9 0.1 2 2 0.0022 0.071 4.3 0.0 119 154 77 111 61 114 0.81 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 KTI12 PF08433.5 270 8.5e-05 13.1 0.0 1 1 4.1e-06 0.00013 12.5 0.0 11 45 12 46 6 84 0.74 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 XdhC_C PF13478.1 136 0.00017 13.2 0.0 1 1 8.4e-06 0.00027 12.6 0.0 5 79 14 98 13 109 0.77 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_31 - 589 FtsK_SpoIIIE PF01580.13 205 0.00028 11.7 0.0 1 1 2.2e-05 0.00071 10.4 0.0 24 62 166 206 153 225 0.78 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_24 - 338 ABC_tran PF00005.22 137 5.1e-05 14.9 0.0 1 1 6.2e-06 0.0001 14.0 0.0 7 35 154 182 151 207 0.85 # 19191 # 20204 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_14 - 916 ABC_tran PF00005.22 137 0.0002 13.0 0.1 1 1 0.00016 0.0025 9.4 0.0 13 39 536 562 527 590 0.84 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_6 - 209 AAA_19 PF13245.1 76 9.3e-05 13.5 0.2 1 1 1.1e-05 0.00034 11.7 0.1 20 51 12 41 4 69 0.77 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 916 AAA_10 PF12846.2 304 7e-39 125.3 0.0 1 1 1e-39 1.1e-38 124.6 0.0 2 298 535 829 534 835 0.89 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_31 - 589 AAA_10 PF12846.2 304 1.5e-12 38.8 0.0 1 1 1.8e-12 1.9e-11 35.1 0.0 2 298 183 473 182 476 0.77 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_6 - 209 AAA_10 PF12846.2 304 5.5e-05 13.9 0.0 1 1 6.8e-06 7.3e-05 13.5 0.0 11 53 12 56 10 96 0.90 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_31 - 589 TrwB_AAD_bind PF10412.4 386 1e-12 38.6 0.0 1 2 1.2e-07 1.9e-06 18.0 0.0 12 52 179 219 170 231 0.91 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_31 - 589 TrwB_AAD_bind PF10412.4 386 1e-12 38.6 0.0 2 2 9.6e-08 1.5e-06 18.2 0.0 243 382 392 535 362 539 0.76 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_14 - 916 TrwB_AAD_bind PF10412.4 386 6.8e-05 12.8 0.0 1 2 4.3e-05 0.00069 9.5 0.0 15 43 534 562 529 583 0.81 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_14 - 916 TrwB_AAD_bind PF10412.4 386 6.8e-05 12.8 0.0 2 2 0.028 0.45 0.3 0.0 243 318 751 827 743 830 0.76 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_31 - 589 T4SS-DNA_transf PF02534.9 469 8.8e-16 48.7 0.1 1 3 0.0045 0.14 1.8 0.0 95 124 134 163 120 175 0.81 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_31 - 589 T4SS-DNA_transf PF02534.9 469 8.8e-16 48.7 0.1 2 3 1.3e-06 4.2e-05 13.5 0.0 45 84 183 224 166 263 0.84 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_31 - 589 T4SS-DNA_transf PF02534.9 469 8.8e-16 48.7 0.1 3 3 1.7e-11 5.4e-10 29.6 0.0 248 435 339 529 329 544 0.82 # 24660 # 26426 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_24 - 338 UPF0079 PF02367.12 123 0.00023 12.1 0.0 1 1 1.2e-05 0.0004 11.4 0.0 10 36 153 179 146 189 0.88 # 19191 # 20204 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.475 1_6 - 209 AAA_24 PF13479.1 213 1.6e-06 19.1 0.4 1 1 1e-07 3.3e-06 18.1 0.1 11 89 10 96 2 101 0.79 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 916 NACHT PF05729.7 166 8.3e-05 13.6 0.1 1 1 9.7e-06 0.00031 11.7 0.0 5 31 539 565 537 570 0.87 # 10435 # 13182 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.484 1_6 - 209 AAA_25 PF13481.1 194 0.00046 10.9 2.2 1 1 9.8e-05 0.0031 8.2 2.2 41 94 10 74 2 104 0.56 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 209 APS_kinase PF01583.15 157 0.00012 13.0 0.0 1 1 8.3e-06 0.00027 11.9 0.0 10 39 10 39 2 54 0.89 # 4854 # 5480 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0f8158c6-beb7-4931-9198-d550c44c02d8 # Target file: checkm_output/bins/pm1379/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1379/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0f8158c6-beb7-4931-9198-d550c44c02d8 checkm_output/bins/pm1379/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:10 2020 # [ok]