# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 254 Eno-Rase_NADH_b PF12242.3 78 0.00018 14.4 0.4 1 1 3.5e-06 0.00041 13.3 0.4 40 75 5 39 1 42 0.84 # 24546 # 25307 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_6 - 275 MipZ PF09140.6 261 1e-09 30.9 0.4 1 2 9.6e-08 1.1e-05 17.7 0.2 4 43 14 53 10 95 0.82 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_6 - 275 MipZ PF09140.6 261 1e-09 30.9 0.4 2 2 6.3e-06 0.00073 11.7 0.0 87 130 124 167 83 210 0.81 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_6 - 275 YhjQ PF06564.7 244 1.6e-06 20.7 0.0 1 2 4.8e-06 0.00055 12.4 0.1 9 38 18 47 11 54 0.89 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_6 - 275 YhjQ PF06564.7 244 1.6e-06 20.7 0.0 2 2 0.00085 0.098 5.0 0.0 166 234 193 265 89 273 0.59 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_27 - 254 3HCDH_N PF02737.13 180 8.4e-05 15.4 0.3 1 1 2.4e-06 0.00014 14.6 0.3 9 64 15 72 6 83 0.75 # 24546 # 25307 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_28 - 269 3HCDH_N PF02737.13 180 0.00061 12.6 1.0 1 1 1.6e-05 0.00094 12.0 1.0 3 44 22 65 20 96 0.76 # 25331 # 26137 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_68 - 200 SSB PF00436.20 104 1.7e-44 143.1 0.7 1 1 2.1e-46 2.4e-44 142.6 0.7 1 99 6 105 6 113 0.96 # 61443 # 62042 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_84 - 502 UvrD_C_2 PF13538.1 104 7.1e-11 35.3 0.0 1 1 1.8e-12 2e-10 33.9 0.0 22 101 353 455 340 456 0.72 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_105 - 142 Usp PF00582.21 140 3e-08 27.1 0.3 1 1 4.4e-10 5e-08 26.3 0.3 2 139 4 137 4 138 0.72 # 94815 # 95240 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_59 - 700 DUF87 PF01935.12 229 1.1e-05 18.5 0.0 1 1 4.4e-07 2.5e-05 17.2 0.0 10 63 174 225 143 234 0.89 # 54850 # 56949 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_47 - 955 DUF87 PF01935.12 229 4.5e-05 16.4 0.0 1 1 2.9e-06 0.00017 14.6 0.0 24 49 510 535 505 543 0.88 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_84 - 502 AAA_22 PF13401.1 131 3.5e-05 17.1 0.0 1 2 1.2e-05 0.00067 12.9 0.0 7 32 18 43 9 117 0.80 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 AAA_22 PF13401.1 131 3.5e-05 17.1 0.0 2 2 0.043 2.5 1.4 0.0 88 103 177 198 128 217 0.67 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_59 - 700 AAA_22 PF13401.1 131 0.00098 12.4 0.0 1 1 4.6e-05 0.0027 11.0 0.0 5 28 187 210 183 250 0.79 # 54850 # 56949 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_57 - 876 AAA_15 PF13175.1 415 4.1e-05 15.8 0.0 1 1 6.7e-07 7.7e-05 14.9 0.0 5 47 87 129 83 153 0.79 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_57 - 876 AAA_21 PF13304.1 303 7.7e-13 42.1 1.3 1 2 6.7e-09 7.7e-07 22.4 0.0 1 22 106 127 106 145 0.84 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_57 - 876 AAA_21 PF13304.1 303 7.7e-13 42.1 1.3 2 2 9.5e-08 1.1e-05 18.6 0.2 219 301 600 695 490 697 0.73 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_6 - 275 ArsA_ATPase PF02374.10 305 2.6e-07 23.0 0.8 1 1 6.3e-09 7.3e-07 21.5 0.1 6 46 16 56 11 70 0.87 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_84 - 502 PhoH PF02562.11 205 2.6e-05 16.6 0.0 1 2 0.00039 0.045 6.0 0.1 9 42 5 38 1 56 0.73 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 PhoH PF02562.11 205 2.6e-05 16.6 0.0 2 2 7.7e-05 0.0089 8.3 0.0 122 168 186 230 183 240 0.83 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_47 - 955 T2SE PF00437.15 272 0.00039 12.4 0.0 1 2 9.7e-05 0.011 7.7 0.0 128 163 509 545 503 552 0.75 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_47 - 955 T2SE PF00437.15 272 0.00039 12.4 0.0 2 2 0.0045 0.52 2.2 0.1 16 74 618 675 612 718 0.81 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_35 - 341 Shikimate_DH PF01488.15 135 0.00012 15.2 0.0 1 1 2.1e-06 0.00024 14.3 0.0 12 99 129 220 120 248 0.87 # 31579 # 32601 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_57 - 876 SMC_N PF02463.14 220 4.2e-17 55.2 0.0 1 2 6.9e-10 8e-08 24.8 0.0 2 56 83 137 82 206 0.84 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_57 - 876 SMC_N PF02463.14 220 4.2e-17 55.2 0.0 2 2 4.7e-11 5.4e-09 28.7 0.0 99 213 468 707 223 713 0.84 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_6 - 275 VirC1 PF07015.6 231 0.0002 13.6 0.0 1 1 3.3e-06 0.00038 12.6 0.0 4 42 13 51 10 78 0.90 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_6 - 275 Fer4_NifH PF00142.13 273 3.7e-10 32.5 0.2 1 2 2.9e-11 3.4e-09 29.3 0.0 4 62 15 78 12 96 0.80 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_6 - 275 Fer4_NifH PF00142.13 273 3.7e-10 32.5 0.2 2 2 0.011 1.2 1.2 0.0 205 248 226 269 157 273 0.82 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_35 - 341 OCD_Mu_crystall PF02423.10 314 2.1e-102 335.1 0.2 1 1 2.1e-104 2.5e-102 334.9 0.2 12 312 18 313 7 315 0.96 # 31579 # 32601 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_57 - 876 AAA_23 PF13476.1 202 2.8e-16 53.5 0.0 1 1 8.3e-18 9.5e-16 51.8 0.0 2 175 86 271 85 355 0.75 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_27 - 254 adh_short PF00106.20 167 2e-33 108.7 0.7 1 1 4.6e-35 2.6e-33 108.4 0.7 1 165 5 171 5 173 0.92 # 24546 # 25307 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_28 - 269 adh_short PF00106.20 167 9.6e-33 106.5 3.0 1 1 2.3e-34 1.3e-32 106.1 3.0 2 166 21 187 20 188 0.93 # 25331 # 26137 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_57 - 876 AAA_13 PF13166.1 712 9.2e-07 20.7 1.9 1 2 3.9e-07 2.3e-05 16.1 0.0 8 46 96 134 88 163 0.82 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_57 - 876 AAA_13 PF13166.1 712 9.2e-07 20.7 1.9 2 2 0.003 0.17 3.3 0.0 525 592 647 714 637 757 0.80 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_64 - 256 AAA_13 PF13166.1 712 0.00071 11.2 1.9 1 1 1.5e-05 0.00089 10.8 1.9 95 196 77 171 61 198 0.73 # 59365 # 60132 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.560 1_6 - 275 CbiA PF01656.18 195 2.8e-30 98.3 0.0 1 1 3e-32 3.4e-30 98.0 0.0 1 194 13 237 13 238 0.75 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_27 - 254 Methyltransf_25 PF13649.1 101 0.00077 13.0 0.1 1 1 3.3e-05 0.0038 10.7 0.1 4 88 12 93 9 104 0.73 # 24546 # 25307 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_77 - 463 KaiC PF06745.8 227 3.5e-07 22.6 0.0 1 1 5.3e-09 6.1e-07 21.8 0.0 2 162 190 370 189 381 0.80 # 70248 # 71636 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_57 - 876 AAA_29 PF13555.1 62 2.1e-07 23.5 0.4 1 1 1.3e-08 7.3e-07 21.8 0.0 12 50 95 131 89 137 0.84 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_47 - 955 AAA_29 PF13555.1 62 0.00025 13.7 0.0 1 1 1e-05 0.0006 12.5 0.0 24 49 510 535 498 548 0.78 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_84 - 502 UvrD_C PF13361.1 351 4e-11 36.0 0.0 1 1 5.2e-13 6e-11 35.4 0.0 278 344 392 455 355 457 0.88 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_27 - 254 KR PF08659.5 181 2.3e-16 53.1 0.4 1 1 6.5e-18 3.8e-16 52.4 0.4 2 163 6 168 5 177 0.87 # 24546 # 25307 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_28 - 269 KR PF08659.5 181 1.1e-11 37.8 1.2 1 1 2.9e-13 1.7e-11 37.2 0.5 2 116 21 131 21 133 0.90 # 25331 # 26137 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_85 - 227 N6_Mtase PF02384.11 311 9.3e-08 24.5 0.0 1 1 1.3e-09 1.4e-07 23.9 0.0 23 116 98 199 90 210 0.82 # 76944 # 77624 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_59 - 700 TraG-D_C PF12696.2 128 3.8e-17 55.5 0.0 1 1 5.8e-19 6.6e-17 54.7 0.0 1 128 502 632 502 632 0.87 # 54850 # 56949 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_6 - 275 AAA_31 PF13614.1 157 1.2e-08 28.1 0.0 1 1 6.7e-10 7.7e-08 25.5 0.0 2 155 12 172 11 174 0.77 # 3305 # 4129 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_77 - 463 DnaB_C PF03796.10 259 5.4e-92 300.4 0.0 1 1 6.8e-94 7.8e-92 299.9 0.0 2 256 189 445 188 448 0.96 # 70248 # 71636 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_84 - 502 AAA_30 PF13604.1 196 4.4e-06 19.5 0.1 1 2 1e-06 0.00012 14.8 0.0 6 63 5 58 1 104 0.68 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 AAA_30 PF13604.1 196 4.4e-06 19.5 0.1 2 2 0.011 1.3 1.7 0.0 119 132 205 218 182 249 0.84 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_47 - 955 FtsK_SpoIIIE PF01580.13 205 1.2e-07 24.5 0.0 1 1 1.3e-08 7.5e-07 21.9 0.0 35 68 506 539 498 550 0.91 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_57 - 876 FtsK_SpoIIIE PF01580.13 205 0.00082 12.0 0.0 1 1 4.5e-05 0.0026 10.3 0.0 25 63 91 129 70 143 0.79 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_47 - 955 ABC_tran PF00005.22 137 0.00019 14.8 0.0 1 2 0.00012 0.0072 9.8 0.0 10 35 508 534 505 546 0.84 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_47 - 955 ABC_tran PF00005.22 137 0.00019 14.8 0.0 2 2 0.034 1.9 1.9 0.1 28 96 677 759 675 773 0.69 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_57 - 876 ABC_tran PF00005.22 137 0.00075 12.9 0.1 1 1 6.5e-05 0.0038 10.7 0.0 13 51 106 153 99 277 0.55 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_84 - 502 AAA_19 PF13245.1 76 5.1e-07 22.5 0.0 1 1 2.4e-08 2.8e-06 20.2 0.0 9 75 15 73 7 74 0.82 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_47 - 955 AAA_10 PF12846.2 304 2.5e-42 138.4 0.1 1 1 8.3e-44 4.8e-42 137.5 0.1 1 303 509 854 509 855 0.80 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_59 - 700 AAA_10 PF12846.2 304 4.5e-10 32.5 0.0 1 1 7.9e-11 4.5e-09 29.2 0.0 2 298 187 579 187 582 0.64 # 54850 # 56949 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_27 - 254 adh_short_C2 PF13561.1 241 1.1e-30 100.3 0.0 1 1 2.2e-32 1.3e-30 100.0 0.0 1 240 11 250 11 251 0.91 # 24546 # 25307 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_28 - 269 adh_short_C2 PF13561.1 241 1.1e-26 87.1 0.0 1 1 2.6e-28 1.5e-26 86.7 0.0 7 239 30 264 26 265 0.87 # 25331 # 26137 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_93 - 298 DUF2407 PF10302.4 97 1.4e-05 18.4 0.1 1 1 2.5e-07 2.9e-05 17.4 0.1 3 47 29 73 27 119 0.92 # 82609 # 83502 # -1 # ID=1_93;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.442 1_84 - 502 ResIII PF04851.10 184 0.0001 15.2 0.0 1 2 2.3e-05 0.0013 11.6 0.0 25 85 15 75 2 100 0.84 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 ResIII PF04851.10 184 0.0001 15.2 0.0 2 2 0.032 1.9 1.4 0.0 138 155 175 192 113 224 0.83 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_47 - 955 ResIII PF04851.10 184 0.00064 12.7 0.0 1 2 0.0001 0.0058 9.6 0.0 21 57 506 544 470 620 0.82 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_47 - 955 ResIII PF04851.10 184 0.00064 12.7 0.0 2 2 0.074 4.2 0.2 0.0 138 157 765 784 679 797 0.80 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_84 - 502 Viral_helicase1 PF01443.13 234 7.8e-09 28.4 0.0 1 3 0.00035 0.04 6.5 0.0 1 51 18 71 18 82 0.68 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 Viral_helicase1 PF01443.13 234 7.8e-09 28.4 0.0 2 3 6.3e-06 0.00073 12.2 0.0 62 131 183 250 160 298 0.73 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 Viral_helicase1 PF01443.13 234 7.8e-09 28.4 0.0 3 3 0.00048 0.055 6.0 0.0 179 230 397 455 365 456 0.70 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_28 - 269 Epimerase PF01370.16 236 0.00011 14.7 0.2 1 2 2.2e-05 0.0013 11.3 0.2 2 67 23 92 22 113 0.79 # 25331 # 26137 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_28 - 269 Epimerase PF01370.16 236 0.00011 14.7 0.2 2 2 0.023 1.3 1.4 0.0 138 184 165 218 144 248 0.71 # 25331 # 26137 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_27 - 254 Epimerase PF01370.16 236 0.00017 14.1 0.3 1 1 8.5e-06 0.00049 12.7 0.2 2 64 8 75 7 191 0.80 # 24546 # 25307 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_47 - 955 DUF853 PF05872.7 504 0.00022 12.7 0.0 1 2 0.0012 0.13 3.5 0.0 17 47 505 535 497 554 0.80 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_47 - 955 DUF853 PF05872.7 504 0.00022 12.7 0.0 2 2 0.00014 0.016 6.6 0.0 257 308 773 822 746 828 0.83 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_59 - 700 TrwB_AAD_bind PF10412.4 386 2.8e-15 48.8 0.0 1 2 6e-09 3.4e-07 22.2 0.1 7 54 178 225 175 228 0.92 # 54850 # 56949 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_59 - 700 TrwB_AAD_bind PF10412.4 386 2.8e-15 48.8 0.0 2 2 1.5e-09 8.6e-08 24.2 0.0 240 377 498 642 467 650 0.79 # 54850 # 56949 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_47 - 955 TrwB_AAD_bind PF10412.4 386 5.7e-05 14.9 0.0 1 2 6.1e-06 0.00035 12.3 0.0 10 41 504 535 496 551 0.84 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_47 - 955 TrwB_AAD_bind PF10412.4 386 5.7e-05 14.9 0.0 2 2 0.045 2.6 -0.4 0.1 219 314 749 843 739 877 0.72 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_84 - 502 AAA_11 PF13086.1 236 0.00029 13.6 0.0 1 2 0.04 4.6 -0.2 0.0 17 41 16 39 2 72 0.69 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 AAA_11 PF13086.1 236 0.00029 13.6 0.0 2 2 1.5e-05 0.0017 11.0 0.0 189 228 180 218 167 219 0.88 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_59 - 700 T4SS-DNA_transf PF02534.9 469 3.1e-05 15.8 0.0 1 1 1.7e-06 0.0002 13.1 0.0 45 218 187 366 174 651 0.66 # 54850 # 56949 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_57 - 876 RNA_helicase PF00910.17 107 0.0011 12.3 0.0 1 1 2.5e-05 0.0029 10.9 0.0 2 27 108 138 107 158 0.75 # 51273 # 53900 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_35 - 341 IlvN PF07991.7 165 0.00024 13.6 0.9 1 1 1.1e-05 0.0013 11.3 0.9 5 82 130 217 126 225 0.56 # 31579 # 32601 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_84 - 502 UvrD-helicase PF00580.16 315 4.7e-17 55.3 0.2 1 2 3.3e-07 3.7e-05 16.2 0.1 2 33 4 35 3 46 0.91 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_84 - 502 UvrD-helicase PF00580.16 315 4.7e-17 55.3 0.2 2 2 1.4e-13 1.7e-11 37.1 0.0 251 306 178 230 149 238 0.87 # 75322 # 76827 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_77 - 463 AAA_25 PF13481.1 194 7e-17 54.5 0.0 1 1 1.9e-18 1.1e-16 53.9 0.0 18 190 192 369 177 373 0.83 # 70248 # 71636 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.477 1_47 - 955 AAA_25 PF13481.1 194 0.00034 13.2 0.0 1 1 2.8e-05 0.0016 11.0 0.0 23 58 499 534 494 564 0.84 # 42929 # 45793 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b4969546-14bf-4385-b139-03d1549a8008 # Target file: checkm_output/bins/pm137/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm137/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b4969546-14bf-4385-b139-03d1549a8008 checkm_output/bins/pm137/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:56:06 2020 # [ok]