# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 65 cobW PF02492.14 178 3.1e-05 13.1 0.4 1 1 3.4e-06 3.4e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 953 # 1147 # 1 # ID=1_1;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.503 1_10 - 158 IstB_IS21 PF01695.12 178 1.6e-56 180.1 0.1 1 1 1.9e-57 1.9e-56 179.9 0.1 52 178 5 133 2 133 0.97 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_22 PF13401.1 131 1.6e-07 21.3 0.2 1 1 5.4e-06 5.4e-05 13.0 0.2 9 28 5 24 3 105 0.55 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_17 PF13207.1 121 3.9e-05 14.2 0.5 1 1 5.3e-06 5.3e-05 13.7 0.5 4 18 5 19 2 98 0.90 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 PhoH PF02562.11 205 2.1e-06 16.7 0.4 1 1 4.1e-07 4.1e-06 15.8 0.4 24 49 5 30 3 97 0.91 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AFG1_ATPase PF03969.11 362 4.5e-06 15.2 0.1 1 1 2.1e-06 2.1e-05 13.1 0.1 67 216 5 152 3 157 0.74 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_1 - 65 Phe_tRNA-synt_N PF02912.13 73 2.8e-05 13.5 0.1 1 1 4.4e-06 4.4e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 953 # 1147 # 1 # ID=1_1;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.503 1_10 - 158 CbiA PF01656.18 195 8.7e-05 11.6 0.2 1 1 1.2e-05 0.00012 11.2 0.2 6 30 7 31 5 149 0.88 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_14 PF13173.1 128 1.1e-07 21.4 0.0 1 1 1.9e-08 1.9e-07 20.7 0.0 7 96 5 101 2 117 0.67 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA PF00004.24 132 2.7e-08 23.8 0.0 1 1 3.9e-09 3.9e-08 23.3 0.0 3 74 5 78 3 113 0.76 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 Bac_DnaA PF00308.13 219 1.2e-10 31.0 0.0 1 1 1.7e-11 1.7e-10 30.5 0.0 39 136 5 100 3 105 0.88 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 Sigma54_activat PF00158.21 168 7.2e-05 12.0 0.3 1 1 5.3e-05 0.00053 9.1 0.2 27 59 5 37 1 97 0.69 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 NTPase_1 PF03266.10 168 4e-07 19.5 0.3 1 2 4.1e-05 0.00041 9.7 0.1 3 30 4 31 2 60 0.82 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 NTPase_1 PF03266.10 168 4e-07 19.5 0.3 2 2 0.00011 0.0011 8.4 0.0 88 113 55 80 41 101 0.72 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_30 PF13604.1 196 4.6e-05 12.7 0.1 1 1 0.00011 0.0011 8.1 0.1 62 116 25 87 3 99 0.64 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_19 PF13245.1 76 8.7e-05 12.0 0.8 1 1 2.3e-05 0.00023 10.6 0.8 15 37 5 27 4 60 0.84 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_10 PF12846.2 304 1.5e-05 14.1 0.2 1 2 1.2e-05 0.00012 11.2 0.1 6 33 5 32 4 69 0.87 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_10 PF12846.2 304 1.5e-05 14.1 0.2 2 2 0.011 0.11 1.5 0.0 202 248 40 91 33 101 0.69 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_25 PF13481.1 194 3.8e-05 12.8 0.3 1 1 5.9e-06 5.9e-05 12.2 0.3 38 58 5 25 2 87 0.82 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_5 PF07728.9 139 2.4e-05 13.8 0.2 1 2 4.2e-05 0.00042 9.7 0.1 5 74 6 71 4 91 0.76 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_10 - 158 AAA_5 PF07728.9 139 2.4e-05 13.8 0.2 2 2 0.023 0.23 0.8 0.0 89 123 122 156 115 157 0.64 # 9049 # 9522 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7318a3d3-7da8-445d-bdb4-8ef4e022189c # Target file: checkm_output/bins/pm1365/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1365/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7318a3d3-7da8-445d-bdb4-8ef4e022189c checkm_output/bins/pm1365/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:59 2020 # [ok]