# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 242 Mg_chelatase PF01078.16 207 0.00039 12.3 0.0 1 1 8.7e-06 0.00076 11.4 0.0 23 42 99 118 95 125 0.90 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 IstB_IS21 PF01695.12 178 2.1e-61 199.1 0.0 1 1 3.1e-63 2.7e-61 198.8 0.0 2 178 54 228 53 228 0.97 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_4 - 389 MipZ PF09140.6 261 1.5e-06 20.2 0.1 1 2 8.4e-08 7.3e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 MipZ PF09140.6 261 1.5e-06 20.2 0.1 2 2 0.036 3.1 -0.6 0.0 88 128 224 264 198 274 0.77 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_35 - 440 DUF87 PF01935.12 229 5.8e-05 15.7 0.4 1 1 1.3e-06 0.00011 14.7 0.2 24 47 163 186 162 193 0.91 # 26728 # 28047 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_2 - 242 AAA_22 PF13401.1 131 6.8e-05 15.7 0.7 1 2 2.5e-05 0.0022 10.9 0.1 3 24 97 118 95 130 0.88 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA_22 PF13401.1 131 6.8e-05 15.7 0.7 2 2 0.0077 0.67 2.8 0.1 85 117 154 193 132 201 0.63 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA_17 PF13207.1 121 8.3e-06 19.4 0.9 1 2 0.028 2.5 1.7 0.0 61 97 10 75 2 99 0.53 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA_17 PF13207.1 121 8.3e-06 19.4 0.9 2 2 9.4e-07 8.1e-05 16.2 0.2 2 27 101 129 100 223 0.71 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_4 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 1 2 1.2e-06 0.0001 14.1 0.0 9 40 115 147 109 154 0.90 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 2 2 0.0022 0.19 3.4 0.0 125 136 233 244 223 252 0.89 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 2_2 - 242 PhoH PF02562.11 205 1e-06 20.8 0.1 1 1 3.8e-08 3.3e-06 19.1 0.1 14 48 93 127 88 145 0.84 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 T2SE PF00437.15 272 0.00055 11.6 0.0 1 1 8e-06 0.00069 11.2 0.0 124 148 94 118 17 159 0.82 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 Zeta_toxin PF06414.7 201 0.00063 11.6 0.0 1 1 1.8e-05 0.0016 10.3 0.0 15 37 97 119 88 130 0.78 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_4 - 389 VirC1 PF07015.6 231 8.2e-06 17.7 0.1 1 2 2.5e-05 0.0021 9.8 0.0 4 42 109 147 107 153 0.91 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 VirC1 PF07015.6 231 8.2e-06 17.7 0.1 2 2 0.00053 0.046 5.4 0.0 100 139 251 290 217 321 0.72 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_35 - 440 Arch_ATPase PF01637.13 234 0.00072 12.0 0.0 1 1 1.4e-05 0.0012 11.3 0.0 30 131 172 265 150 273 0.79 # 26728 # 28047 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_2 - 242 AAA_16 PF13191.1 185 0.00045 12.9 0.2 1 1 1.8e-05 0.0015 11.2 0.1 23 44 97 118 88 137 0.87 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA_18 PF13238.1 129 2.8e-05 17.1 0.1 1 2 0.085 7.4 -0.4 0.0 74 90 23 39 4 54 0.72 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA_18 PF13238.1 129 2.8e-05 17.1 0.1 2 2 1.6e-06 0.00014 14.9 0.0 1 52 101 160 101 197 0.74 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_4 - 389 CbiA PF01656.18 195 4.5e-33 107.0 0.0 1 1 1.4e-34 6.2e-33 106.5 0.0 1 188 109 333 109 340 0.76 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 2_2 - 242 CbiA PF01656.18 195 0.0015 10.6 2.0 1 1 6e-05 0.0026 9.9 1.2 8 30 107 129 101 228 0.90 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 KaiC PF06745.8 227 0.00011 14.1 1.9 1 2 0.0035 0.3 2.8 0.1 100 139 15 56 2 63 0.73 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 KaiC PF06745.8 227 0.00011 14.1 1.9 2 2 2e-05 0.0017 10.2 0.1 16 48 95 126 84 134 0.84 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA PF00004.24 132 1.2e-07 24.7 0.0 1 1 2.3e-09 2e-07 24.0 0.0 1 83 101 177 101 221 0.80 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 Bac_DnaA PF00308.13 219 7.9e-10 31.4 0.5 1 1 1.3e-11 1.2e-09 30.8 0.1 38 136 102 196 92 217 0.79 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_4 - 389 AAA_31 PF13614.1 157 2.5e-06 20.2 0.1 1 2 7.8e-06 0.00068 12.3 0.0 2 49 108 155 107 179 0.86 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 AAA_31 PF13614.1 157 2.5e-06 20.2 0.1 2 2 0.0009 0.078 5.6 0.0 115 151 228 267 211 271 0.80 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 2_2 - 242 AAA_33 PF13671.1 143 0.00019 14.0 0.1 1 1 7e-06 0.00061 12.4 0.0 2 19 101 118 101 162 0.78 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_35 - 440 AAA_30 PF13604.1 196 0.00041 12.6 0.7 1 2 0.0003 0.013 7.8 0.1 16 63 160 204 155 214 0.70 # 26728 # 28047 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_35 - 440 AAA_30 PF13604.1 196 0.00041 12.6 0.7 2 2 0.027 1.2 1.4 0.0 16 70 225 275 213 277 0.76 # 26728 # 28047 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_2 - 242 AAA_30 PF13604.1 196 0.00043 12.6 0.0 1 1 4e-05 0.0018 10.6 0.0 19 49 99 129 93 132 0.82 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_17 - 211 KH_4 PF13083.1 73 0.00028 13.3 0.0 1 2 0.027 2.4 0.7 0.0 19 42 11 33 3 35 0.76 # 12836 # 13468 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 1_17 - 211 KH_4 PF13083.1 73 0.00028 13.3 0.0 2 2 3.6e-05 0.0032 9.9 0.0 18 45 157 186 147 187 0.83 # 12836 # 13468 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 2_2 - 242 6PF2K PF01591.13 223 0.00047 11.9 0.0 1 1 9.1e-06 0.00079 11.2 0.0 13 66 98 150 91 160 0.80 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_35 - 440 ABC_tran PF00005.22 137 0.0003 13.8 0.1 1 1 8.6e-06 0.00075 12.5 0.1 6 35 157 186 155 209 0.91 # 26728 # 28047 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_35 - 440 ATP-synt_ab PF00006.20 215 2.1e-77 252.1 0.0 1 1 3.1e-79 2.7e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 26728 # 28047 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_2 - 242 AAA_19 PF13245.1 76 1.2e-05 17.8 0.1 1 1 3.2e-07 2.8e-05 16.6 0.1 12 35 102 123 93 131 0.75 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_4 - 156 RA PF00788.18 93 0.00072 12.8 0.1 1 1 2.4e-05 0.0021 11.3 0.0 26 68 3 46 1 54 0.88 # 3989 # 4456 # 1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 2_2 - 242 ResIII PF04851.10 184 2.1e-05 17.1 0.0 1 1 3.7e-07 3.2e-05 16.5 0.0 22 70 79 150 43 206 0.76 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 NACHT PF05729.7 166 0.0016 10.8 1.9 1 2 0.0001 0.0087 8.4 0.4 2 27 100 125 99 158 0.84 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 NACHT PF05729.7 166 0.0016 10.8 1.9 2 2 0.012 1.1 1.6 0.1 83 127 160 197 133 217 0.73 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA_25 PF13481.1 194 2.8e-08 26.1 0.1 1 2 0.05 2.2 0.3 0.0 129 153 9 32 2 39 0.81 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 2_2 - 242 AAA_25 PF13481.1 194 2.8e-08 26.1 0.1 2 2 7.9e-09 3.4e-07 22.5 0.0 8 61 72 126 65 149 0.83 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_35 - 440 AAA_25 PF13481.1 194 3.1e-05 16.2 0.2 1 1 1.7e-06 7.3e-05 14.9 0.0 24 157 151 267 135 285 0.69 # 26728 # 28047 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_2 - 242 AAA_28 PF13521.1 163 3.1e-06 19.9 0.0 1 1 6e-08 5.2e-06 19.2 0.0 1 52 100 156 100 167 0.74 # 1542 # 2267 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/680a5a60-021e-4956-bfbd-a2ed5a9b8ce5 # Target file: checkm_output/bins/pm136/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm136/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/680a5a60-021e-4956-bfbd-a2ed5a9b8ce5 checkm_output/bins/pm136/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:59 2020 # [ok]