# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 389 MipZ PF09140.6 261 1.5e-06 20.2 0.1 1 2 8.4e-08 7.5e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 MipZ PF09140.6 261 1.5e-06 20.2 0.1 2 2 0.036 3.2 -0.6 0.0 88 128 224 264 198 274 0.77 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_35 - 276 DUF87 PF01935.12 229 0.00016 14.3 0.9 1 1 3.6e-06 0.00032 13.3 0.4 26 47 1 22 1 29 0.92 # 26727 # 27554 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 1 2 1.2e-06 0.0001 14.1 0.0 9 40 115 147 109 154 0.90 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 2 2 0.0022 0.19 3.4 0.0 125 136 233 244 223 252 0.89 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 VirC1 PF07015.6 231 8.4e-06 17.7 0.1 1 2 2.5e-05 0.0022 9.8 0.0 4 42 109 147 107 153 0.91 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 VirC1 PF07015.6 231 8.4e-06 17.7 0.1 2 2 0.00053 0.048 5.4 0.0 100 139 251 290 217 321 0.72 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_35 - 276 Arch_ATPase PF01637.13 234 0.00035 13.0 0.0 1 1 7.4e-06 0.00066 12.1 0.0 30 131 8 101 3 109 0.78 # 26727 # 27554 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 389 CbiA PF01656.18 195 4.6e-33 107.0 0.0 1 1 7.1e-35 6.3e-33 106.5 0.0 1 188 109 333 109 340 0.76 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 AAA_31 PF13614.1 157 2.5e-06 20.2 0.1 1 2 7.8e-06 0.0007 12.3 0.0 2 49 108 155 107 179 0.86 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_4 - 389 AAA_31 PF13614.1 157 2.5e-06 20.2 0.1 2 2 0.0009 0.08 5.6 0.0 115 151 228 267 211 271 0.80 # 1738 # 2904 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442 1_17 - 211 KH_4 PF13083.1 73 0.00028 13.3 0.0 1 2 0.027 2.4 0.7 0.0 19 42 11 33 3 35 0.76 # 12834 # 13466 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 1_17 - 211 KH_4 PF13083.1 73 0.00028 13.3 0.0 2 2 3.6e-05 0.0032 9.9 0.0 18 45 157 186 147 187 0.83 # 12834 # 13466 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 1_35 - 276 ATP-synt_ab PF00006.20 215 6.2e-69 224.5 0.0 1 1 9e-71 8e-69 224.1 0.0 19 215 2 194 1 194 0.99 # 26727 # 27554 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_35 - 276 AAA_19 PF13245.1 76 0.00065 12.2 0.2 1 1 0.00031 0.028 7.0 0.2 17 53 5 64 2 128 0.77 # 26727 # 27554 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 3_8 - 156 RA PF00788.18 93 0.00073 12.8 0.1 1 1 2.4e-05 0.0022 11.3 0.0 26 68 3 46 1 54 0.88 # 6159 # 6626 # 1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3234e081-bf74-46d0-887b-6dba65e5549f # Target file: checkm_output/bins/pm1358/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1358/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3234e081-bf74-46d0-887b-6dba65e5549f checkm_output/bins/pm1358/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:57 2020 # [ok]