# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 65 cobW PF02492.14 178 2.5e-05 13.1 0.4 1 1 3.4e-06 2.7e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 2854 # 3048 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_4 - 492 IstB_IS21 PF01695.12 178 1.4e-67 215.9 0.0 1 1 2.4e-68 1.9e-67 215.4 0.0 8 178 297 467 290 467 0.94 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_22 PF13401.1 131 7.6e-07 18.7 0.1 1 1 1.7e-05 0.00014 11.4 0.1 6 28 336 358 331 435 0.64 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 PhoH PF02562.11 205 1.8e-08 23.1 0.0 1 1 5.6e-09 4.5e-08 21.8 0.0 8 47 322 362 316 375 0.78 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AFG1_ATPase PF03969.11 362 2.3e-05 12.6 0.1 1 1 9.2e-06 7.4e-05 10.9 0.1 63 215 335 485 276 491 0.67 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_3 - 65 Phe_tRNA-synt_N PF02912.13 73 2.3e-05 13.5 0.1 1 1 4.4e-06 3.5e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 2854 # 3048 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_4 - 492 AAA_16 PF13191.1 185 3.5e-06 16.4 0.0 1 2 0.018 0.15 1.4 0.0 39 90 55 112 54 128 0.77 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_16 PF13191.1 185 3.5e-06 16.4 0.0 2 2 7.8e-06 6.3e-05 12.3 0.0 22 41 332 351 319 415 0.83 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_14 PF13173.1 128 2.8e-07 19.9 0.0 1 1 8.2e-08 6.6e-07 18.7 0.0 2 95 334 434 333 451 0.67 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_29 PF13555.1 62 8.8e-05 11.4 0.0 1 1 4.1e-05 0.00033 9.6 0.0 20 58 331 370 322 372 0.70 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA PF00004.24 132 4.5e-08 22.7 0.0 1 1 1.1e-08 8.4e-08 21.9 0.0 1 74 337 412 337 444 0.78 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 Bac_DnaA PF00308.13 219 1.6e-10 30.3 0.0 1 1 3.3e-11 2.6e-10 29.6 0.0 35 136 335 434 305 439 0.79 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 Sigma54_activat PF00158.21 168 5.3e-05 12.1 0.1 1 1 2.5e-05 0.0002 10.2 0.1 18 52 330 364 315 429 0.74 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 DUF258 PF03193.11 161 1.5e-06 16.9 0.0 1 1 3.1e-07 2.5e-06 16.1 0.0 21 75 320 386 304 417 0.71 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 NTPase_1 PF03266.10 168 8.9e-05 11.6 1.0 1 2 0.0043 0.034 3.2 0.1 2 30 337 365 336 371 0.78 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 NTPase_1 PF03266.10 168 8.9e-05 11.6 1.0 2 2 0.0006 0.0048 5.9 0.0 88 112 389 413 375 435 0.73 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 ABC_tran PF00005.22 137 3.9e-05 13.3 0.2 1 1 2.6e-05 0.00021 11.0 0.0 8 30 331 353 325 373 0.86 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_10 PF12846.2 304 3.9e-06 15.7 0.1 1 2 2.3e-06 1.9e-05 13.5 0.0 1 33 334 366 334 403 0.89 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_10 PF12846.2 304 3.9e-06 15.7 0.1 2 2 0.068 0.55 -1.2 0.0 202 247 374 424 366 432 0.67 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 ResIII PF04851.10 184 6.9e-05 12.0 0.0 1 2 8.5e-05 0.00068 8.8 0.0 7 51 320 360 280 374 0.72 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 ResIII PF04851.10 184 6.9e-05 12.0 0.0 2 2 0.022 0.18 1.0 0.0 112 163 363 413 358 435 0.72 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_25 PF13481.1 194 7.3e-06 14.8 0.0 1 1 1.8e-06 1.5e-05 13.8 0.0 29 58 330 359 305 406 0.82 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 492 AAA_5 PF07728.9 139 1e-05 14.6 0.2 1 1 1e-05 8e-05 11.8 0.1 1 74 336 405 336 412 0.71 # 4085 # 5560 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.518 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f6750739-0958-4f2c-8dc3-c807ee7b24e9 # Target file: checkm_output/bins/pm1351/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1351/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f6750739-0958-4f2c-8dc3-c807ee7b24e9 checkm_output/bins/pm1351/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:52 2020 # [ok]