# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 322 MipZ PF09140.6 261 6.6e-07 21.0 0.0 1 2 0.0018 0.13 3.7 0.0 3 50 111 163 109 196 0.73 # 14048 # 15013 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_15 - 322 MipZ PF09140.6 261 6.6e-07 21.0 0.0 2 2 6.2e-07 4.2e-05 15.0 0.0 87 136 233 282 220 295 0.87 # 14048 # 15013 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_35 - 562 3HCDH_N PF02737.13 180 0.011 7.7 6.6 1 2 0.0086 0.59 2.1 2.8 1 30 100 129 100 133 0.93 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 3HCDH_N PF02737.13 180 0.011 7.7 6.6 2 2 0.0003 0.02 6.9 0.1 2 36 273 307 272 359 0.75 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 GIDA PF01134.17 392 1.8e-06 19.4 5.3 1 2 2.6e-08 1.8e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 GIDA PF01134.17 392 1.8e-06 19.4 5.3 2 2 0.01 0.69 1.0 0.3 349 385 390 426 376 430 0.79 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_2 - 327 UvrD_C_2 PF13538.1 104 0.00022 13.8 0.0 1 1 2.2e-05 0.0015 11.1 0.0 70 103 137 171 83 171 0.86 # 669 # 1649 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_35 - 562 Pyr_redox_2 PF07992.9 201 4.8e-43 139.7 0.0 1 1 1.6e-44 1.1e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 Trp_halogenase PF04820.9 454 0.003 8.5 3.3 1 1 8.1e-05 0.0055 7.6 3.3 1 47 100 143 100 151 0.76 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 NAD_binding_7 PF13241.1 103 2.6e-06 20.0 1.2 1 2 1.9e-05 0.0013 11.4 0.2 9 38 100 129 96 164 0.90 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 NAD_binding_7 PF13241.1 103 2.6e-06 20.0 1.2 2 2 0.00049 0.033 6.9 0.1 8 45 271 314 264 382 0.66 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 NAD_binding_8 PF13450.1 68 4.7e-05 15.8 1.2 1 1 6.9e-07 4.7e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_15 - 322 CbiA PF01656.18 195 6.5e-19 60.4 0.0 1 1 1.6e-20 1.1e-18 59.7 0.0 1 142 111 292 111 321 0.75 # 14048 # 15013 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_35 - 562 HI0933_like PF03486.9 409 2.9e-09 28.1 5.0 1 2 4.3e-07 2.9e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 HI0933_like PF03486.9 409 2.9e-09 28.1 5.0 2 2 1.7e-06 0.00012 13.0 0.0 83 163 286 362 281 379 0.85 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_4 - 129 Ribosomal_S20p PF01649.13 84 0.00019 14.2 0.1 1 1 4.8e-06 0.00033 13.4 0.1 6 59 56 109 53 118 0.75 # 4942 # 5328 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_35 - 562 FAD_binding_2 PF00890.19 417 6.5e-07 20.8 5.3 1 3 9.5e-09 6.5e-07 20.8 5.3 2 32 101 131 100 138 0.91 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 FAD_binding_2 PF00890.19 417 6.5e-07 20.8 5.3 2 3 0.034 2.3 -0.8 0.2 142 204 311 366 286 382 0.67 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 FAD_binding_2 PF00890.19 417 6.5e-07 20.8 5.3 3 3 0.0019 0.13 3.4 0.1 373 402 374 405 368 419 0.86 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 Thi4 PF01946.12 230 0.00018 13.0 0.4 1 1 6.3e-06 0.00043 11.7 0.4 19 70 100 150 95 158 0.88 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 Pyr_redox_3 PF13738.1 203 9.8e-19 60.5 0.1 1 3 1.5e-06 0.0001 14.8 0.0 164 199 95 130 48 134 0.85 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 Pyr_redox_3 PF13738.1 203 9.8e-19 60.5 0.1 2 3 5.8e-09 4e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 Pyr_redox_3 PF13738.1 203 9.8e-19 60.5 0.1 3 3 5.6e-08 3.8e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_15 - 322 AAA_31 PF13614.1 157 4.4e-05 15.8 0.1 1 2 0.063 4.3 -0.4 0.0 9 58 117 171 109 206 0.59 # 14048 # 15013 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_15 - 322 AAA_31 PF13614.1 157 4.4e-05 15.8 0.1 2 2 4e-06 0.00027 13.3 0.0 108 147 235 273 229 279 0.87 # 14048 # 15013 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_35 - 562 XdhC_C PF13478.1 136 0.00056 12.6 1.0 1 2 0.08 5.5 -0.3 0.1 1 29 101 129 101 163 0.86 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 XdhC_C PF13478.1 136 0.00056 12.6 1.0 2 2 6.9e-05 0.0047 9.6 0.1 1 66 273 351 273 371 0.64 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 K_oxygenase PF13434.1 341 2.3e-06 19.0 0.2 1 3 0.0041 0.28 2.3 0.2 187 223 95 129 86 132 0.74 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 K_oxygenase PF13434.1 341 2.3e-06 19.0 0.2 2 3 2.9e-06 0.00019 12.7 0.0 130 231 217 309 200 339 0.79 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 K_oxygenase PF13434.1 341 2.3e-06 19.0 0.2 3 3 0.022 1.5 -0.0 0.0 139 160 345 366 314 376 0.63 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 FAD_oxidored PF12831.2 428 4e-07 21.7 3.8 1 2 5.9e-09 4e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 FAD_oxidored PF12831.2 428 4e-07 21.7 3.8 2 2 0.01 0.68 1.2 0.0 84 120 305 341 261 364 0.71 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 DAO PF01266.19 358 4.5e-12 37.8 7.5 1 2 1.9e-08 1.3e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 DAO PF01266.19 358 4.5e-12 37.8 7.5 2 2 7.7e-09 5.2e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 Pyr_redox PF00070.22 80 6.5e-20 63.8 5.4 1 2 1.2e-06 8.4e-05 15.4 1.5 2 31 101 130 100 132 0.95 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 Pyr_redox PF00070.22 80 6.5e-20 63.8 5.4 2 2 3.2e-17 2.1e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 AlaDh_PNT_C PF01262.16 168 5.8e-07 21.6 2.3 1 2 3.9e-06 0.00027 12.9 0.3 16 50 94 128 80 131 0.87 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_35 - 562 AlaDh_PNT_C PF01262.16 168 5.8e-07 21.6 2.3 2 2 0.00012 0.0078 8.1 0.1 19 60 269 310 260 341 0.84 # 31091 # 32776 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d5e9fab6-cce7-4ec0-ae16-20faeeb070bd # Target file: checkm_output/bins/pm135/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm135/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d5e9fab6-cce7-4ec0-ae16-20faeeb070bd checkm_output/bins/pm135/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:52 2020 # [ok]