# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_15 - 144 Mg_chelatase PF01078.16 207 0.00025 13.1 0.0 1 1 3.9e-06 0.00037 12.5 0.0 24 42 99 117 84 127 0.90 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_18 - 130 IstB_IS21 PF01695.12 178 6.8e-37 119.4 0.1 1 1 1.7e-38 8e-37 119.2 0.1 83 178 15 112 5 112 0.95 # 13975 # 14364 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 2_15 - 144 IstB_IS21 PF01695.12 178 2.6e-34 111.0 0.2 1 2 0.027 1.3 1.2 0.2 83 111 4 32 2 33 0.89 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 IstB_IS21 PF01695.12 178 2.6e-34 111.0 0.2 2 2 5.8e-35 2.7e-33 107.6 0.0 1 84 51 134 51 141 0.96 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_4 - 389 MipZ PF09140.6 261 1.8e-06 20.0 0.1 1 2 8.4e-08 7.9e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_4 - 389 MipZ PF09140.6 261 1.8e-06 20.0 0.1 2 2 0.043 4.1 -0.8 0.0 88 128 224 264 211 274 0.76 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_1 - 153 UvrD_C_2 PF13538.1 104 3.1e-05 16.9 0.0 1 1 4.8e-07 4.5e-05 16.4 0.0 2 80 58 140 57 152 0.71 # 933 # 1391 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_42 - 440 DUF87 PF01935.12 229 5.6e-05 15.8 0.2 1 1 1.3e-06 0.00012 14.7 0.2 24 47 163 186 162 193 0.91 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_15 - 144 AAA_22 PF13401.1 131 0.00032 13.7 0.0 1 1 7.7e-06 0.00072 12.5 0.0 6 24 99 117 94 138 0.83 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_17 PF13207.1 121 1.2e-05 18.9 0.0 1 2 0.025 2.3 1.9 0.0 20 53 8 46 4 91 0.62 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_17 PF13207.1 121 1.2e-05 18.9 0.0 2 2 1.8e-06 0.00017 15.3 0.0 2 20 100 118 99 136 0.80 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_4 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.0 1 2 2.3e-06 0.00011 14.1 0.0 9 40 115 147 109 154 0.90 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_4 - 389 ArsA_ATPase PF02374.10 305 1.6e-06 20.1 0.0 2 2 0.0044 0.21 3.4 0.0 125 136 233 244 223 252 0.89 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_15 - 144 ArsA_ATPase PF02374.10 305 7.2e-05 14.7 0.0 1 1 2.4e-06 0.00011 14.1 0.0 5 34 101 130 97 133 0.87 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 PhoH PF02562.11 205 2e-06 20.0 0.0 1 1 3.1e-08 2.9e-06 19.4 0.0 16 47 94 125 80 141 0.85 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_4 - 389 VirC1 PF07015.6 231 9.2e-06 17.6 0.1 1 2 2.5e-05 0.0023 9.8 0.0 4 42 109 147 107 153 0.91 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_4 - 389 VirC1 PF07015.6 231 9.2e-06 17.6 0.1 2 2 0.00054 0.051 5.4 0.0 100 139 251 290 218 321 0.72 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_42 - 440 Arch_ATPase PF01637.13 234 0.00079 11.9 0.0 1 1 1.4e-05 0.0013 11.3 0.0 30 131 172 265 150 273 0.79 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_15 - 144 AAA_16 PF13191.1 185 4.3e-07 22.9 0.1 1 2 0.0026 0.25 4.1 0.0 122 173 20 88 2 96 0.61 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_16 PF13191.1 185 4.3e-07 22.9 0.1 2 2 2.3e-07 2.2e-05 17.3 0.0 23 61 96 134 87 139 0.81 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_18 PF13238.1 129 0.00014 15.0 0.1 1 1 3.6e-06 0.00034 13.8 0.0 1 19 100 118 100 139 0.79 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_4 - 389 CbiA PF01656.18 195 6.1e-33 106.7 0.0 1 1 1.8e-34 8.3e-33 106.2 0.0 1 188 109 333 109 340 0.76 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_15 - 144 CbiA PF01656.18 195 3.2e-05 16.2 0.0 1 1 1.3e-06 6.3e-05 15.2 0.0 9 31 107 129 100 132 0.94 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA PF00004.24 132 7e-06 19.1 0.1 1 2 0.069 6.5 -0.2 0.0 23 53 31 61 4 67 0.66 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA PF00004.24 132 7e-06 19.1 0.1 2 2 3.3e-07 3.1e-05 17.0 0.1 1 21 100 120 100 138 0.82 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 Bac_DnaA PF00308.13 219 0.00077 11.9 0.0 1 1 1.4e-05 0.0013 11.2 0.0 34 68 97 129 71 136 0.77 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_4 - 389 AAA_31 PF13614.1 157 3e-06 20.1 0.1 1 2 1.6e-05 0.00075 12.3 0.0 2 49 108 155 107 178 0.86 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_4 - 389 AAA_31 PF13614.1 157 3e-06 20.1 0.1 2 2 0.002 0.092 5.5 0.1 116 151 229 267 217 271 0.79 # 1414 # 2580 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_15 - 144 AAA_31 PF13614.1 157 0.00023 14.0 0.0 1 1 1.5e-05 0.00071 12.3 0.0 10 36 106 132 85 136 0.93 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_33 PF13671.1 143 0.00024 13.8 0.3 1 2 0.07 6.6 -0.6 0.0 44 44 39 39 4 77 0.46 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_33 PF13671.1 143 0.00024 13.8 0.3 2 2 8.7e-06 0.00081 12.1 0.1 2 19 100 117 100 129 0.85 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_42 - 440 AAA_30 PF13604.1 196 0.00044 12.7 0.7 1 3 0.063 5.9 -0.8 0.0 47 72 61 86 53 96 0.91 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_42 - 440 AAA_30 PF13604.1 196 0.00044 12.7 0.7 2 3 0.00015 0.014 7.8 0.1 16 63 160 204 155 214 0.70 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_42 - 440 AAA_30 PF13604.1 196 0.00044 12.7 0.7 3 3 0.014 1.3 1.4 0.0 16 70 225 275 213 277 0.76 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_42 - 440 ABC_tran PF00005.22 137 0.0003 13.9 0.1 1 1 8.6e-06 0.00081 12.5 0.1 6 35 157 186 155 209 0.91 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_42 - 440 ATP-synt_ab PF00006.20 215 2.2e-77 252.1 0.0 1 1 3.1e-79 2.9e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_15 - 144 RuvB_N PF05496.7 234 7e-05 14.7 0.0 1 1 9.6e-07 9.1e-05 14.4 0.0 48 70 95 117 68 137 0.85 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_19 PF13245.1 76 9.8e-08 24.5 0.2 1 2 0.068 6.4 -0.5 0.0 51 75 47 72 26 73 0.84 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_19 PF13245.1 76 9.8e-08 24.5 0.2 2 2 4.2e-09 3.9e-07 22.6 0.1 13 48 100 131 87 133 0.88 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_10 PF12846.2 304 0.00023 13.4 0.0 1 1 4.2e-06 0.0004 12.7 0.0 3 35 99 131 98 139 0.87 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 ArgK PF03308.11 267 0.00014 13.5 0.0 1 1 2.2e-06 0.00021 12.9 0.0 28 60 96 128 80 133 0.86 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_24 PF13479.1 213 0.00049 12.5 0.0 1 1 7.7e-06 0.00072 12.0 0.0 5 23 99 117 95 129 0.86 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 NACHT PF05729.7 166 0.0002 13.9 0.0 1 1 4.8e-06 0.00045 12.7 0.0 3 27 100 124 98 137 0.84 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_25 PF13481.1 194 2.9e-07 22.9 0.0 1 1 8.4e-09 3.9e-07 22.4 0.0 22 64 81 129 57 138 0.76 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_42 - 440 AAA_25 PF13481.1 194 3.3e-05 16.1 0.2 1 1 1.7e-06 7.9e-05 14.9 0.0 24 157 151 267 135 285 0.69 # 31217 # 32536 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_15 - 144 AAA_28 PF13521.1 163 0.00018 14.3 0.0 1 2 0.049 4.6 -0.0 0.0 98 125 22 49 6 76 0.55 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_28 PF13521.1 163 0.00018 14.3 0.0 2 2 9.5e-06 0.00089 12.1 0.0 2 25 100 127 99 136 0.76 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_5 PF07728.9 139 3.9e-06 19.5 0.1 1 2 0.045 4.2 -0.1 0.0 91 126 13 49 3 61 0.52 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_15 - 144 AAA_5 PF07728.9 139 3.9e-06 19.5 0.1 2 2 2e-07 1.9e-05 17.2 0.0 1 37 99 138 99 140 0.81 # 8705 # 9136 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/58faf8fc-8fbb-444c-807f-9adc2e7038be # Target file: checkm_output/bins/pm1340/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1340/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/58faf8fc-8fbb-444c-807f-9adc2e7038be checkm_output/bins/pm1340/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:48 2020 # [ok]