# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 97 Mg_chelatase PF01078.16 207 1.4e-06 20.3 0.0 1 1 1.9e-08 1.7e-06 20.1 0.0 7 49 52 93 28 95 0.88 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 Rad17 PF03215.10 519 0.0008 10.8 0.0 1 1 1.4e-05 0.0013 10.2 0.0 42 69 231 258 220 275 0.79 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 IstB_IS21 PF01695.12 178 4.9e-06 18.8 0.0 1 1 6.2e-08 5.5e-06 18.6 0.0 44 68 63 87 25 89 0.86 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_50 - 222 MipZ PF09140.6 261 1.5e-13 43.1 0.4 1 1 3.6e-13 3.2e-11 35.5 0.4 3 131 5 112 3 133 0.82 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_15 - 97 DUF87 PF01935.12 229 0.0011 11.5 2.7 1 1 1.5e-05 0.0013 11.2 2.1 26 43 69 86 59 89 0.91 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 NB-ARC PF00931.17 287 2.5e-05 15.9 0.5 1 2 0.01 0.9 1.0 0.0 106 144 13 46 10 62 0.73 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 NB-ARC PF00931.17 287 2.5e-05 15.9 0.5 2 2 1.2e-06 0.00011 13.9 0.2 11 40 58 87 53 90 0.83 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 AAA_22 PF13401.1 131 1.4e-05 18.0 0.0 1 1 6.7e-07 3e-05 16.9 0.0 4 28 234 258 230 330 0.82 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 AAA_22 PF13401.1 131 0.00017 14.5 0.1 1 1 7e-06 0.00031 13.7 0.1 5 26 67 88 60 95 0.84 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 ATP_bind_1 PF03029.12 238 0.00025 13.3 0.0 1 1 3.9e-06 0.00034 12.9 0.0 1 23 71 93 71 96 0.89 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_50 - 222 SRP54 PF00448.17 196 3.8e-05 15.9 0.1 1 1 2.5e-06 0.00011 14.4 0.1 11 94 13 90 4 111 0.68 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_15 - 97 SRP54 PF00448.17 196 0.00063 11.9 0.0 1 1 2.1e-05 0.00091 11.4 0.0 4 25 69 90 66 95 0.86 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 AAA_17 PF13207.1 121 3.4e-06 20.6 2.8 1 1 2.1e-07 4.7e-06 20.2 1.4 3 21 70 88 68 91 0.91 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 AAA_17 PF13207.1 121 5.8e-06 19.9 0.0 1 1 5.8e-07 1.3e-05 18.8 0.0 1 35 236 276 236 370 0.66 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 222 AAA_17 PF13207.1 121 8.2e-06 19.4 0.0 1 1 7.1e-07 1.6e-05 18.5 0.0 9 100 13 112 12 184 0.71 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_66 - 251 AAA_17 PF13207.1 121 0.00034 14.2 0.0 1 1 3.2e-05 0.0007 13.2 0.0 3 100 8 126 6 242 0.76 # 44403 # 45155 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_15 - 97 AAA_21 PF13304.1 303 0.00014 14.6 0.5 1 2 0.095 8.4 -1.1 0.0 68 90 39 49 6 69 0.50 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 AAA_21 PF13304.1 303 0.00014 14.6 0.5 2 2 3.3e-06 0.00029 13.6 0.2 3 23 70 90 68 95 0.89 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_66 - 251 Miro PF08477.8 119 0.00032 14.0 0.4 1 1 1.3e-05 0.0012 12.1 0.1 3 74 8 83 6 97 0.77 # 44403 # 45155 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_50 - 222 MobB PF03205.9 140 1.4e-06 20.9 0.1 1 2 1.3e-06 5.6e-05 15.6 0.1 10 38 13 41 3 48 0.81 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_50 - 222 MobB PF03205.9 140 1.4e-06 20.9 0.1 2 2 0.0085 0.38 3.2 0.0 44 75 85 119 74 137 0.74 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_15 - 97 MobB PF03205.9 140 0.00041 12.8 0.0 1 1 1.7e-05 0.00075 12.0 0.0 4 22 70 88 68 92 0.89 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_50 - 222 ArsA_ATPase PF02374.10 305 1.2e-06 20.5 0.0 1 1 4.3e-08 1.9e-06 19.8 0.0 4 39 6 41 3 55 0.88 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_66 - 251 ArsA_ATPase PF02374.10 305 0.00011 14.0 0.0 1 1 6.7e-06 0.0003 12.6 0.0 5 41 8 46 5 98 0.77 # 44403 # 45155 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_15 - 97 PhoH PF02562.11 205 0.00068 11.6 0.1 1 1 1.4e-05 0.0013 10.7 0.0 13 40 60 87 47 89 0.71 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 T2SE PF00437.15 272 4.7e-39 126.6 0.0 1 1 2.4e-40 7.2e-39 126.0 0.0 66 271 166 385 151 386 0.87 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 T2SE PF00437.15 272 2.3e-16 52.2 0.0 1 1 8.5e-18 2.5e-16 52.1 0.0 92 159 2 96 1 96 0.96 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_16 - 118 T2SE PF00437.15 272 1.8e-08 26.3 0.0 1 1 7.4e-10 2.2e-08 26.0 0.0 5 77 29 103 26 112 0.88 # 12953 # 13306 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.393 1_15 - 97 G-alpha PF00503.15 389 3.3e-06 18.7 0.0 1 1 3.7e-08 3.3e-06 18.7 0.0 43 85 51 93 13 95 0.82 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 Zeta_toxin PF06414.7 201 2e-05 16.5 0.3 1 1 9.1e-07 4.1e-05 15.5 0.1 13 38 63 88 50 95 0.80 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 Zeta_toxin PF06414.7 201 0.00056 11.8 0.0 1 1 2.4e-05 0.0011 10.8 0.0 18 39 236 257 222 270 0.85 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 222 VirC1 PF07015.6 231 1.9e-08 26.3 0.0 1 1 4.8e-10 4.3e-08 25.2 0.0 5 55 6 56 3 61 0.93 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_50 - 222 Fer4_NifH PF00142.13 273 2.4e-06 19.6 0.3 1 2 2e-07 8.9e-06 17.7 0.0 8 41 11 44 6 58 0.91 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_50 - 222 Fer4_NifH PF00142.13 273 2.4e-06 19.6 0.3 2 2 0.071 3.2 -0.5 0.1 30 74 81 124 65 133 0.74 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_66 - 251 Fer4_NifH PF00142.13 273 4.3e-05 15.5 0.6 1 2 2e-05 0.00087 11.2 0.1 5 46 9 51 5 95 0.73 # 44403 # 45155 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_66 - 251 Fer4_NifH PF00142.13 273 4.3e-05 15.5 0.6 2 2 0.011 0.51 2.1 0.0 146 200 153 208 141 213 0.81 # 44403 # 45155 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_9 - 513 Arch_ATPase PF01637.13 234 0.00011 14.6 0.0 1 1 2.6e-06 0.00023 13.6 0.0 8 43 223 257 221 270 0.90 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_9 - 513 AAA_16 PF13191.1 185 8.1e-06 18.6 0.1 1 1 4.2e-07 1.9e-05 17.5 0.1 8 49 222 259 221 382 0.84 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 AAA_16 PF13191.1 185 4.4e-05 16.3 0.1 1 1 1.5e-06 6.5e-05 15.7 0.1 23 47 65 89 36 95 0.81 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 AAA_23 PF13476.1 202 3.3e-06 20.3 3.6 1 1 9.7e-08 4.3e-06 19.9 3.0 22 40 69 87 53 90 0.90 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 AAA_23 PF13476.1 202 2.1e-05 17.6 0.0 1 1 1.8e-06 8.1e-05 15.7 0.0 19 36 234 251 218 279 0.88 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 AAA_18 PF13238.1 129 1.9e-05 17.7 0.3 1 1 1.3e-06 3.9e-05 16.7 0.1 2 20 70 88 70 94 0.91 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 AAA_18 PF13238.1 129 3.9e-05 16.7 0.0 1 1 4.1e-06 0.00012 15.1 0.0 1 29 237 269 237 362 0.90 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 222 AAA_18 PF13238.1 129 8.2e-05 15.7 0.0 1 1 4.7e-06 0.00014 14.9 0.0 8 79 13 86 12 108 0.69 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_50 - 222 CbiA PF01656.18 195 1.1e-18 60.1 0.2 1 1 5.7e-20 2.5e-18 58.9 0.2 2 174 6 161 5 182 0.70 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_66 - 251 CbiA PF01656.18 195 7.7e-08 24.7 0.5 1 1 4.4e-09 1.9e-07 23.4 0.4 3 46 8 51 7 195 0.69 # 44403 # 45155 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_9 - 513 AAA_14 PF13173.1 128 0.00015 14.4 0.0 1 1 4.4e-06 0.00039 13.1 0.0 3 39 235 268 233 341 0.80 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 AAA_29 PF13555.1 62 2.7e-07 22.8 0.0 1 1 9.4e-09 4.2e-07 22.2 0.0 25 51 68 94 55 96 0.85 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 AAA_29 PF13555.1 62 2.4e-05 16.6 0.0 1 1 1.2e-06 5.2e-05 15.5 0.0 19 40 231 251 221 257 0.82 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 AAA PF00004.24 132 6e-05 16.0 0.4 1 1 1.2e-06 0.00011 15.2 0.1 2 20 70 88 69 93 0.91 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 Sigma54_activat PF00158.21 168 6.4e-06 18.5 0.0 1 1 9.3e-08 8.3e-06 18.1 0.0 9 44 53 88 46 95 0.84 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_13 - 472 TraG-D_C PF12696.2 128 3.2e-27 87.7 0.0 1 1 5.9e-29 5.3e-27 87.0 0.0 2 127 246 370 245 371 0.86 # 10282 # 11697 # -1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_50 - 222 AAA_31 PF13614.1 157 9.1e-08 24.9 0.0 1 2 1.7e-06 0.00015 14.4 0.0 3 41 5 43 3 57 0.87 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_50 - 222 AAA_31 PF13614.1 157 9.1e-08 24.9 0.0 2 2 0.00012 0.011 8.5 0.0 106 151 68 112 63 115 0.92 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_15 - 97 NTPase_1 PF03266.10 168 0.00087 11.8 0.2 1 2 0.029 2.6 0.5 0.0 46 64 21 40 9 63 0.70 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 NTPase_1 PF03266.10 168 0.00087 11.8 0.2 2 2 4.9e-05 0.0044 9.5 0.1 2 21 69 88 68 93 0.88 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 AAA_33 PF13671.1 143 0.00035 13.2 0.0 1 1 9.2e-06 0.00082 12.0 0.0 2 81 237 325 236 337 0.63 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_50 - 222 KTI12 PF08433.5 270 0.00043 12.2 0.1 1 1 8.2e-06 0.00073 11.5 0.1 11 41 13 43 4 86 0.87 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_9 - 513 AAA_30 PF13604.1 196 4.9e-07 22.2 0.0 1 1 2e-08 9e-07 21.4 0.0 3 42 219 258 217 267 0.92 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 AAA_30 PF13604.1 196 6.2e-05 15.4 0.0 1 1 1.9e-06 8.3e-05 15.0 0.0 9 42 58 90 50 95 0.74 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 FtsK_SpoIIIE PF01580.13 205 1.1e-06 21.0 0.0 1 1 1.5e-08 1.3e-06 20.7 0.0 19 58 45 86 29 88 0.83 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 ABC_tran PF00005.22 137 5.8e-06 19.4 0.1 1 1 2.1e-07 9.3e-06 18.7 0.1 14 37 69 92 59 95 0.86 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 ABC_tran PF00005.22 137 0.00022 14.3 0.0 1 1 1.3e-05 0.00056 13.0 0.0 12 37 235 260 228 338 0.89 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 AAA_19 PF13245.1 76 1.5e-07 23.9 0.0 1 1 5.3e-09 2.3e-07 23.3 0.0 5 35 61 90 57 96 0.81 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_9 - 513 AAA_19 PF13245.1 76 1.8e-05 17.2 0.0 1 1 1.8e-06 8e-05 15.1 0.0 5 35 228 258 224 281 0.82 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_21 - 786 AAA_10 PF12846.2 304 1.5e-22 73.1 0.0 1 1 2.7e-23 6.1e-22 71.1 0.0 2 291 424 698 423 709 0.78 # 16121 # 18478 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_15 - 97 AAA_10 PF12846.2 304 5.2e-05 15.5 0.4 1 1 5.2e-06 0.00012 14.3 0.1 3 22 68 87 66 90 0.92 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_66 - 251 AAA_10 PF12846.2 304 0.00013 14.2 0.3 1 1 6.3e-06 0.00014 14.1 0.3 3 67 6 81 4 246 0.85 # 44403 # 45155 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_9 - 513 AAA_10 PF12846.2 304 0.00085 11.5 0.1 1 1 7.3e-05 0.0016 10.6 0.1 4 26 237 259 234 264 0.85 # 5187 # 6725 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_15 - 97 ResIII PF04851.10 184 5.4e-05 15.8 0.0 1 1 7.8e-07 7e-05 15.5 0.1 22 47 49 87 19 91 0.73 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_13 - 472 TrwB_AAD_bind PF10412.4 386 1.4e-18 59.4 0.0 1 2 2e-07 8.9e-06 17.2 0.0 74 128 40 96 37 109 0.82 # 10282 # 11697 # -1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_13 - 472 TrwB_AAD_bind PF10412.4 386 1.4e-18 59.4 0.0 2 2 2e-14 8.7e-13 40.3 0.0 164 369 160 373 111 382 0.84 # 10282 # 11697 # -1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_15 - 97 TrwB_AAD_bind PF10412.4 386 0.00012 13.5 0.0 1 1 4.1e-06 0.00018 12.9 0.0 15 36 66 87 58 91 0.85 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 Sigma54_activ_2 PF14532.1 138 0.00014 14.7 0.0 1 1 2.1e-06 0.00018 14.3 0.0 12 42 57 87 46 92 0.89 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_46 - 383 TIGR00344 TIGR00344 847 2.2e-05 15.3 0.2 1 1 3.5e-07 3.1e-05 14.7 0.2 681 777 162 255 154 269 0.76 # 33108 # 34256 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 1_13 - 472 T4SS-DNA_transf PF02534.9 469 1.2e-66 217.8 0.0 1 1 1.9e-68 1.7e-66 217.4 0.0 107 456 40 410 33 418 0.91 # 10282 # 11697 # -1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.432 1_15 - 97 Pox_A32 PF04665.7 241 0.00016 13.8 0.0 1 1 2.5e-06 0.00023 13.2 0.0 4 33 58 86 55 90 0.78 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_50 - 222 GTP_EFTU PF00009.22 188 1.2e-07 24.1 0.0 1 1 2.1e-09 1.9e-07 23.4 0.0 15 116 15 124 10 200 0.78 # 36058 # 36723 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_15 - 97 NACHT PF05729.7 166 0.00026 13.4 0.1 1 1 5.2e-06 0.00046 12.6 0.1 4 22 70 88 67 91 0.91 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 AAA_28 PF13521.1 163 1.4e-05 17.9 0.3 1 2 0.022 1.9 1.1 0.0 122 155 14 46 6 55 0.75 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 AAA_28 PF13521.1 163 1.4e-05 17.9 0.3 2 2 1.2e-06 0.0001 15.0 0.0 2 21 69 88 68 94 0.90 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 1_15 - 97 AAA_5 PF07728.9 139 0.00023 13.6 0.0 1 1 5.7e-06 0.0005 12.5 0.0 1 23 68 90 68 96 0.86 # 12666 # 12956 # -1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.419 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a206895d-5bd1-487b-81bc-322d6012e0c9 # Target file: checkm_output/bins/pm134/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm134/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a206895d-5bd1-487b-81bc-322d6012e0c9 checkm_output/bins/pm134/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:48 2020 # [ok]