# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 425 NAD_binding_7 PF13241.1 103 8.6e-05 12.4 0.0 1 1 2e-05 0.00018 11.3 0.0 3 40 214 251 213 318 0.78 # 6742 # 8016 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_4 - 425 AdoHcyase_NAD PF00670.16 162 5.2e-05 12.6 0.0 1 1 1.7e-05 0.00015 11.1 0.0 16 92 211 285 203 303 0.81 # 6742 # 8016 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_4 - 425 2-Hacid_dh_C PF02826.14 178 2.1e-07 19.7 0.1 1 1 4.8e-08 4.4e-07 18.7 0.1 27 86 209 266 193 274 0.84 # 6742 # 8016 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_4 - 425 ELFV_dehydrog PF00208.16 244 8.8e-74 237.6 0.0 1 1 1.3e-74 1.1e-73 237.2 0.0 1 244 188 420 188 420 0.98 # 6742 # 8016 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 1_4 - 425 AlaDh_PNT_C PF01262.16 168 0.00011 11.3 1.9 1 1 2.2e-05 0.0002 10.5 0.3 17 52 215 250 202 260 0.85 # 6742 # 8016 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.387 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b9b22ddb-c78f-44b9-b3e1-3b07724b4a3f # Target file: checkm_output/bins/pm1339/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1339/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b9b22ddb-c78f-44b9-b3e1-3b07724b4a3f checkm_output/bins/pm1339/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:46 2020 # [ok]