# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_7 - 289 Eno-Rase_NADH_b PF12242.3 78 4e-05 15.9 0.0 1 1 1.2e-06 8.9e-05 14.7 0.0 40 74 4 37 2 52 0.87 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_17 - 399 MipZ PF09140.6 261 3.2e-07 22.1 0.2 1 2 2.3e-05 0.0017 9.9 0.0 2 53 110 166 109 190 0.73 # 23448 # 24644 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_17 - 399 MipZ PF09140.6 261 3.2e-07 22.1 0.2 2 2 2e-05 0.0015 10.1 0.1 90 135 236 281 222 287 0.89 # 23448 # 24644 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_7 - 289 NmrA PF05368.8 233 1.1e-05 17.2 0.4 1 1 1.9e-07 1.4e-05 16.9 0.4 1 93 6 121 6 153 0.79 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 3_5 - 257 AAA_22 PF13401.1 131 2.8e-05 16.7 0.0 1 1 1.6e-06 0.00012 14.7 0.0 5 30 65 90 61 161 0.72 # 3570 # 4340 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 2_15 - 253 AAA_15 PF13175.1 415 0.00038 12.0 0.3 1 2 0.00066 0.048 5.0 0.0 27 42 33 48 13 90 0.83 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_15 - 253 AAA_15 PF13175.1 415 0.00038 12.0 0.3 2 2 0.00066 0.048 5.0 0.2 373 397 160 184 151 191 0.92 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_15 - 253 AAA_21 PF13304.1 303 3.3e-16 52.5 0.1 1 2 5.8e-10 4.2e-08 25.9 0.1 4 28 33 59 31 80 0.74 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_15 - 253 AAA_21 PF13304.1 303 3.3e-16 52.5 0.1 2 2 1.2e-09 8.5e-08 24.9 0.0 220 285 122 184 84 216 0.76 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_8 - 1054 Helicase_C PF00271.26 78 1.2e-08 27.2 0.0 1 1 4.3e-10 3.1e-08 25.9 0.0 36 77 884 926 866 927 0.85 # 6528 # 9689 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_15 - 253 SMC_N PF02463.14 220 3e-06 19.0 0.2 1 1 3.6e-07 2.6e-05 16.0 0.2 28 186 32 184 14 208 0.69 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_17 - 399 Fer4_NifH PF00142.13 273 0.00069 11.2 0.0 1 1 1.7e-05 0.0013 10.4 0.0 8 74 117 188 110 197 0.77 # 23448 # 24644 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 3_5 - 257 AAA_16 PF13191.1 185 8.7e-07 21.5 0.1 1 2 3.1e-07 1.1e-05 17.9 0.0 7 51 50 91 45 107 0.76 # 3570 # 4340 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 3_5 - 257 AAA_16 PF13191.1 185 8.7e-07 21.5 0.1 2 2 0.044 1.6 1.1 0.0 126 166 107 149 96 166 0.68 # 3570 # 4340 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 2_15 - 253 AAA_16 PF13191.1 185 3.3e-05 16.4 1.4 1 1 2.7e-06 9.8e-05 14.8 1.4 24 63 28 67 15 207 0.77 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_15 - 253 AAA_23 PF13476.1 202 0.00081 12.2 0.1 1 1 1.9e-05 0.0013 11.5 0.1 25 37 34 46 29 51 0.88 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_7 - 289 adh_short PF00106.20 167 5.4e-19 61.1 3.6 1 1 1.2e-20 8.7e-19 60.5 3.6 2 163 5 160 4 164 0.86 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_17 - 399 CbiA PF01656.18 195 1.7e-21 68.9 0.0 1 1 5e-23 3.6e-21 67.9 0.0 1 143 111 293 111 324 0.74 # 23448 # 24644 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_15 - 253 AAA_29 PF13555.1 62 3.1e-05 15.9 0.1 1 1 8.4e-07 6.1e-05 15.0 0.1 22 40 27 45 16 54 0.82 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 3_5 - 257 AAA PF00004.24 132 2e-07 23.7 0.0 1 1 5.6e-09 4.1e-07 22.7 0.0 2 96 68 161 67 211 0.77 # 3570 # 4340 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 2_7 - 289 KR PF08659.5 181 1.4e-05 17.3 4.0 1 1 6.8e-07 4.9e-05 15.5 4.0 3 162 6 158 5 165 0.80 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_20 - 441 Pyr_redox_3 PF13738.1 203 6.5e-20 64.5 0.0 1 2 1.6e-18 1.2e-16 53.8 0.0 73 201 87 218 55 220 0.82 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_20 - 441 Pyr_redox_3 PF13738.1 203 6.5e-20 64.5 0.0 2 2 0.00011 0.0077 8.7 0.0 99 144 289 337 229 366 0.74 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 2_15 - 253 DUF258 PF03193.11 161 0.00016 13.4 0.0 1 1 3.4e-06 0.00024 12.7 0.0 19 59 11 52 2 96 0.79 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_17 - 399 AAA_31 PF13614.1 157 2.9e-06 19.7 0.0 1 2 0.0019 0.13 4.6 0.0 8 53 116 166 109 209 0.79 # 23448 # 24644 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_17 - 399 AAA_31 PF13614.1 157 2.9e-06 19.7 0.0 2 2 5.7e-06 0.00041 12.7 0.0 109 148 236 274 234 279 0.88 # 23448 # 24644 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_15 - 253 AAA_33 PF13671.1 143 0.0001 14.7 0.0 1 1 7.1e-06 0.00051 12.4 0.0 4 98 33 187 31 203 0.72 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_15 - 253 ABC_tran PF00005.22 137 1e-35 115.5 0.0 1 1 1.8e-37 1.3e-35 115.1 0.0 1 137 18 167 18 167 0.97 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_20 - 441 K_oxygenase PF13434.1 341 1.4e-117 384.8 0.0 1 1 2.3e-119 1.6e-117 384.6 0.0 1 340 2 332 2 333 0.96 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 2_7 - 289 RmlD_sub_bind PF04321.12 287 7.4e-06 17.4 0.2 1 1 1.7e-07 1.2e-05 16.7 0.1 2 88 5 113 4 131 0.79 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_7 - 289 NAD_binding_10 PF13460.1 183 1.6e-09 30.5 0.6 1 1 2.8e-11 2e-09 30.1 0.6 1 78 6 88 6 164 0.81 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_7 - 289 adh_short_C2 PF13561.1 241 4.5e-10 32.1 0.7 1 1 8.8e-12 6.3e-10 31.6 0.7 5 164 12 162 9 168 0.80 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_15 - 253 SbcCD_C PF13558.1 90 0.00018 13.9 0.0 1 1 3.8e-05 0.0027 10.1 0.0 28 89 134 182 117 183 0.73 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_8 - 1054 ResIII PF04851.10 184 1.1e-05 17.8 0.1 1 2 2.1e-06 0.00015 14.1 0.0 6 86 17 106 7 136 0.77 # 6528 # 9689 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_8 - 1054 ResIII PF04851.10 184 1.1e-05 17.8 0.1 2 2 0.017 1.2 1.3 0.0 148 183 261 304 240 305 0.76 # 6528 # 9689 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_20 - 441 FMO-like PF00743.14 532 4.7e-07 20.7 0.0 1 2 3.9e-07 2.8e-05 14.9 0.0 85 202 97 199 80 216 0.76 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_20 - 441 FMO-like PF00743.14 532 4.7e-07 20.7 0.0 2 2 0.00089 0.064 3.8 0.0 316 337 317 338 306 348 0.79 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_20 - 441 NAD_binding_9 PF13454.1 156 1.2e-06 20.9 3.8 1 3 2.2e-05 0.0016 10.7 0.1 61 154 63 149 39 151 0.65 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_20 - 441 NAD_binding_9 PF13454.1 156 1.2e-06 20.9 3.8 2 3 0.018 1.3 1.2 0.1 2 24 185 206 184 222 0.79 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_20 - 441 NAD_binding_9 PF13454.1 156 1.2e-06 20.9 3.8 3 3 0.00025 0.018 7.2 0.0 122 155 293 331 268 332 0.78 # 28368 # 29690 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 2_7 - 289 Epimerase PF01370.16 236 1.4e-08 26.8 0.3 1 1 3e-10 2.1e-08 26.3 0.3 1 164 6 169 6 194 0.68 # 5848 # 6714 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 2_8 - 1054 DEAD PF00270.24 169 4.3e-09 28.5 0.1 1 2 3.3e-06 0.00024 13.1 0.0 16 112 38 135 19 147 0.76 # 6528 # 9689 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_8 - 1054 DEAD PF00270.24 169 4.3e-09 28.5 0.1 2 2 3.7e-06 0.00027 12.9 0.0 118 163 258 304 239 309 0.86 # 6528 # 9689 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_19 - 732 Plug PF07715.10 108 1.4e-22 72.5 1.9 1 1 5.7e-24 4.1e-22 71.1 1.9 3 107 43 144 41 145 0.95 # 26150 # 28345 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.547 3_5 - 257 RNA_helicase PF00910.17 107 0.00056 12.6 0.0 1 1 1.6e-05 0.0011 11.6 0.0 2 24 68 90 67 115 0.84 # 3570 # 4340 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 3_5 - 257 NACHT PF05729.7 166 3.5e-06 19.2 0.0 1 2 7.3e-05 0.0053 8.9 0.0 3 26 67 90 65 107 0.85 # 3570 # 4340 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 3_5 - 257 NACHT PF05729.7 166 3.5e-06 19.2 0.0 2 2 0.0001 0.0074 8.4 0.0 72 163 120 211 105 214 0.74 # 3570 # 4340 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 2_15 - 253 AAA_25 PF13481.1 194 0.00018 13.4 0.0 1 1 5.1e-06 0.00036 12.4 0.0 30 110 25 98 6 134 0.71 # 18600 # 19358 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 2_8 - 1054 SNF2_N PF00176.18 299 1.7e-08 26.0 0.0 1 2 3.2e-05 0.0023 9.1 0.0 20 56 31 68 18 88 0.67 # 6528 # 9689 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 2_8 - 1054 SNF2_N PF00176.18 299 1.7e-08 26.0 0.0 2 2 7.1e-07 5.1e-05 14.6 0.0 128 227 253 372 236 390 0.74 # 6528 # 9689 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.587 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7a8ce319-34ae-43db-ad52-bdb488f97976 # Target file: checkm_output/bins/pm1333/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1333/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7a8ce319-34ae-43db-ad52-bdb488f97976 checkm_output/bins/pm1333/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:44 2020 # [ok]