# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_66 - 228 UPF0020 PF01170.13 180 1.5e-05 17.3 0.0 1 2 0.00039 0.035 6.4 0.0 104 123 18 37 5 89 0.71 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_66 - 228 UPF0020 PF01170.13 180 1.5e-05 17.3 0.0 2 2 6.2e-05 0.0055 9.0 0.0 28 54 163 189 158 221 0.67 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 1 2 1.2e-12 1.1e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 2 2 1.6e-12 1.4e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 YhjQ PF06564.7 244 2.1e-05 16.7 0.3 1 2 1.8e-06 0.00016 13.8 0.3 4 38 3 37 1 50 0.89 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 YhjQ PF06564.7 244 2.1e-05 16.7 0.3 2 2 0.029 2.6 0.0 0.0 108 144 69 103 44 113 0.78 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_74 - 176 SSB PF00436.20 104 5.4e-41 131.5 0.3 1 1 7.9e-43 7e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 57340 # 57867 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_40 - 503 AAA_22 PF13401.1 131 5.2e-06 19.4 0.0 1 1 1.1e-07 1e-05 18.4 0.0 4 49 229 281 226 349 0.82 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_60 - 209 SRP54 PF00448.17 196 2.2e-07 23.2 0.1 1 1 1.5e-08 1.3e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_66 - 228 N6_N4_Mtase PF01555.13 231 6.8e-37 119.9 0.0 1 1 3.4e-36 3e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_60 - 209 AAA_17 PF13207.1 121 1.4e-05 18.7 0.0 1 1 8.2e-07 3.7e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_40 - 503 AAA_17 PF13207.1 121 0.00013 15.5 0.2 1 1 8.9e-06 0.0004 14.0 0.1 1 32 231 264 231 353 0.79 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_60 - 209 MobB PF03205.9 140 5.1e-05 15.8 0.1 1 1 1.6e-06 0.00014 14.3 0.0 10 42 11 41 1 46 0.79 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 ArsA_ATPase PF02374.10 305 3.9e-08 25.4 0.9 1 3 1.2e-09 1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 ArsA_ATPase PF02374.10 305 3.9e-08 25.4 0.9 2 3 0.053 4.8 -1.2 0.0 121 135 69 85 47 86 0.75 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 ArsA_ATPase PF02374.10 305 3.9e-08 25.4 0.9 3 3 0.075 6.7 -1.7 0.0 205 234 132 161 118 202 0.65 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_40 - 503 T2SE PF00437.15 272 1.6e-37 121.6 0.0 1 1 3.1e-39 2.8e-37 120.8 0.0 66 269 161 378 142 380 0.86 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_60 - 209 VirC1 PF07015.6 231 3e-09 29.0 0.0 1 1 7.1e-11 6.4e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 Fer4_NifH PF00142.13 273 6.6e-05 14.9 0.2 1 1 2.3e-06 0.0002 13.3 0.0 8 38 9 39 2 46 0.89 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_40 - 503 AAA_16 PF13191.1 185 0.00011 15.0 0.0 1 1 2.5e-06 0.00023 13.9 0.0 21 51 226 256 215 338 0.85 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_40 - 503 AAA_23 PF13476.1 202 0.00031 13.8 0.1 1 1 6.5e-06 0.00058 12.9 0.1 20 37 230 247 218 264 0.90 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_40 - 503 AAA_18 PF13238.1 129 0.00064 12.8 0.4 1 1 1.7e-05 0.0015 11.6 0.2 1 18 232 249 232 267 0.87 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_60 - 209 CbiA PF01656.18 195 1.6e-22 72.6 0.0 1 1 3.1e-24 2.7e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_40 - 503 AAA_29 PF13555.1 62 2.5e-05 16.6 0.0 1 1 6.7e-07 6e-05 15.3 0.0 20 40 227 246 218 260 0.84 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_11 - 633 TraG-D_C PF12696.2 128 8.6e-09 28.1 1.8 1 2 0.087 7.7 -0.8 0.1 68 100 178 213 172 225 0.56 # 8417 # 10315 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_11 - 633 TraG-D_C PF12696.2 128 8.6e-09 28.1 1.8 2 2 1.6e-10 1.5e-08 27.4 0.2 1 88 437 523 437 558 0.83 # 8417 # 10315 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_60 - 209 AAA_31 PF13614.1 157 3.8e-06 19.6 0.0 1 2 2.5e-07 2.2e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 AAA_31 PF13614.1 157 3.8e-06 19.6 0.0 2 2 0.055 4.9 -0.2 0.0 109 127 68 86 62 113 0.68 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_66 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 37.1 0.0 1 2 4.2e-07 3.8e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_66 - 228 Methyltransf_26 PF13659.1 117 1.6e-11 37.1 0.0 2 2 9.7e-08 8.6e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_40 - 503 AAA_30 PF13604.1 196 2.3e-07 23.3 0.0 1 1 4.9e-09 4.4e-07 22.4 0.0 2 45 213 256 212 263 0.91 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_40 - 503 ABC_tran PF00005.22 137 0.00043 13.3 0.0 1 1 8.7e-06 0.00077 12.5 0.0 13 37 231 255 226 364 0.91 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_66 - 228 Cons_hypoth95 PF03602.10 183 1.9e-05 16.9 0.0 1 2 0.00065 0.058 5.5 0.0 114 146 20 54 10 82 0.65 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_66 - 228 Cons_hypoth95 PF03602.10 183 1.9e-05 16.9 0.0 2 2 4e-05 0.0036 9.4 0.0 41 62 162 183 145 218 0.78 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_40 - 503 AAA_19 PF13245.1 76 8.3e-05 15.1 0.7 1 1 4.3e-06 0.00019 13.9 0.1 5 36 223 255 219 272 0.71 # 32367 # 33875 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_60 - 209 AAA_19 PF13245.1 76 0.00026 13.5 0.1 1 2 0.00019 0.0086 8.6 0.0 20 48 11 35 9 44 0.84 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_60 - 209 AAA_19 PF13245.1 76 0.00026 13.5 0.1 2 2 0.021 0.95 2.1 0.0 42 63 135 158 118 184 0.76 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_29 - 254 AAA_10 PF12846.2 304 6.3e-14 44.8 0.1 1 1 5.8e-15 1.3e-13 43.7 0.0 207 303 48 137 11 138 0.93 # 22754 # 23515 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 1_30 - 759 AAA_10 PF12846.2 304 1.3e-12 40.4 0.0 1 1 1.2e-13 2.7e-12 39.4 0.0 8 182 502 755 498 757 0.80 # 23521 # 25797 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.568 1_11 - 633 AAA_10 PF12846.2 304 8.5e-07 21.4 0.1 1 1 6.4e-08 1.4e-06 20.6 0.1 2 292 137 506 136 516 0.72 # 8417 # 10315 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_60 - 209 AAA_10 PF12846.2 304 0.00014 14.1 0.0 1 1 1e-05 0.00022 13.4 0.0 11 39 11 39 3 66 0.90 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_7 - 283 Methyltransf_27 PF13708.1 194 5.1e-67 217.9 0.0 1 1 8e-69 7.1e-67 217.4 0.0 2 194 85 278 84 278 0.96 # 3229 # 4077 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_11 - 633 TrwB_AAD_bind PF10412.4 386 4.4e-06 18.2 0.3 1 2 0.00033 0.029 5.6 0.0 11 32 132 153 126 164 0.80 # 8417 # 10315 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_11 - 633 TrwB_AAD_bind PF10412.4 386 4.4e-06 18.2 0.3 2 2 1.5e-05 0.0014 10.0 0.2 260 332 452 525 425 570 0.82 # 8417 # 10315 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 1_66 - 228 MethyltransfD12 PF02086.10 260 0.00028 13.1 0.0 1 2 0.011 0.95 1.5 0.0 174 188 17 31 8 90 0.84 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_66 - 228 MethyltransfD12 PF02086.10 260 0.00028 13.1 0.0 2 2 4e-05 0.0036 9.5 0.0 20 46 163 189 148 197 0.78 # 52920 # 53603 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_52 - 214 TIGR00922 TIGR00922 172 0.00025 13.4 0.0 1 1 3.3e-06 0.00029 13.1 0.0 54 104 105 155 56 176 0.87 # 42535 # 43176 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_60 - 209 AAA_25 PF13481.1 194 0.0001 14.4 0.1 1 1 3.1e-06 0.00027 13.1 0.0 42 87 10 44 3 90 0.78 # 48144 # 48770 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7164ca57-abd6-4244-a183-2463b25ae8bb # Target file: checkm_output/bins/pm133/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm133/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7164ca57-abd6-4244-a183-2463b25ae8bb checkm_output/bins/pm133/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:42 2020 # [ok]