# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_61 - 562 3HCDH_N PF02737.13 180 0.017 7.7 6.6 1 2 0.0086 0.91 2.1 2.8 1 30 100 129 100 133 0.93 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 3HCDH_N PF02737.13 180 0.017 7.7 6.6 2 2 0.0003 0.032 6.9 0.1 2 36 273 307 272 359 0.75 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 GIDA PF01134.17 392 2.8e-06 19.4 5.3 1 2 2.6e-08 2.8e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 GIDA PF01134.17 392 2.8e-06 19.4 5.3 2 2 0.01 1.1 1.0 0.3 349 385 390 426 376 430 0.79 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_15 - 145 SSB PF00436.20 104 7.7e-32 102.3 0.2 1 1 8.4e-34 8.9e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 6608 # 7042 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_61 - 562 Pyr_redox_2 PF07992.9 201 7.5e-43 139.7 0.0 1 1 1.6e-44 1.7e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 DUF87 PF01935.12 229 9.9e-05 15.2 0.0 1 1 1.8e-06 0.00019 14.2 0.0 28 45 157 174 155 188 0.89 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 AAA_22 PF13401.1 131 4.4e-06 19.9 0.0 1 1 1.9e-07 1e-05 18.7 0.0 4 30 152 178 149 243 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_37 - 1017 AAA_22 PF13401.1 131 0.0004 13.5 0.0 1 1 2.4e-05 0.0013 11.9 0.0 8 69 492 557 486 594 0.67 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_24 - 388 ATP_bind_1 PF03029.12 238 0.00086 11.8 0.0 1 1 1.3e-05 0.0014 11.2 0.0 1 25 157 181 157 191 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 Trp_halogenase PF04820.9 454 0.0047 8.5 3.3 1 1 8.1e-05 0.0086 7.6 3.3 1 47 100 143 100 151 0.76 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 NAD_binding_7 PF13241.1 103 4.1e-06 20.0 1.2 1 2 1.9e-05 0.002 11.4 0.2 9 38 100 129 96 164 0.90 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 NAD_binding_7 PF13241.1 103 4.1e-06 20.0 1.2 2 2 0.00049 0.052 6.9 0.1 8 45 271 314 264 382 0.66 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_37 - 1017 AAA_17 PF13207.1 121 4.8e-05 17.2 0.0 1 1 2.9e-06 0.00031 14.6 0.0 3 28 492 523 492 587 0.67 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_24 - 388 Miro PF08477.8 119 0.001 12.6 0.0 1 1 2.1e-05 0.0023 11.5 0.0 4 28 157 186 156 220 0.72 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 MobB PF03205.9 140 0.00056 12.6 0.0 1 1 1e-05 0.0011 11.7 0.0 4 25 156 177 154 190 0.85 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 T2SE PF00437.15 272 2.3e-23 75.4 0.0 1 1 3.4e-25 3.6e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 NAD_binding_8 PF13450.1 68 7.3e-05 15.8 1.2 1 1 6.9e-07 7.3e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 SMC_N PF02463.14 220 0.0011 11.2 0.0 1 1 1.8e-05 0.0019 10.4 0.0 25 50 153 178 146 195 0.81 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 AAA_16 PF13191.1 185 0.00068 12.6 0.0 1 1 1.2e-05 0.0013 11.7 0.0 25 50 153 178 141 211 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 AAA_23 PF13476.1 202 2.5e-06 20.9 0.8 1 1 3.9e-08 4.1e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_37 - 1017 AAA_18 PF13238.1 129 5.8e-05 16.4 0.1 1 1 4.2e-06 0.00044 13.6 0.0 2 19 492 509 492 562 0.79 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_24 - 388 KaiC PF06745.8 227 0.00082 11.5 0.0 1 1 1.4e-05 0.0014 10.7 0.0 11 59 144 191 137 201 0.76 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 HI0933_like PF03486.9 409 4.6e-09 28.1 5.0 1 2 4.3e-07 4.5e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 HI0933_like PF03486.9 409 4.6e-09 28.1 5.0 2 2 1.7e-06 0.00018 13.0 0.0 83 163 286 362 281 379 0.85 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 AAA_29 PF13555.1 62 9e-06 18.2 0.1 1 1 2e-07 2.2e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 1 3 9.5e-09 1e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 2 3 0.034 3.6 -0.8 0.2 142 204 311 366 286 382 0.67 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 3 3 0.0019 0.2 3.4 0.1 373 402 374 405 368 419 0.86 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Thi4 PF01946.12 230 0.00028 13.0 0.4 1 1 6.3e-06 0.00067 11.7 0.4 19 70 100 150 95 158 0.88 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 1 3 1.5e-06 0.00016 14.8 0.0 164 199 95 130 48 134 0.85 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 2 3 5.8e-09 6.2e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 3 3 5.6e-08 5.9e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 Ribosomal_S5 PF00333.15 67 3.3e-05 16.6 0.1 1 2 0.00093 0.098 5.5 0.0 26 45 84 103 77 114 0.83 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 Ribosomal_S5 PF00333.15 67 3.3e-05 16.6 0.1 2 2 0.00012 0.012 8.4 0.0 21 54 242 274 230 278 0.91 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_73 - 696 TraG-D_C PF12696.2 128 0.00014 14.7 0.1 1 1 2.4e-06 0.00025 13.9 0.1 3 94 437 524 435 556 0.78 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_61 - 562 XdhC_C PF13478.1 136 0.00088 12.6 1.0 1 2 0.08 8.5 -0.3 0.1 1 29 101 129 101 163 0.86 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 XdhC_C PF13478.1 136 0.00088 12.6 1.0 2 2 6.9e-05 0.0073 9.6 0.1 1 66 273 351 273 371 0.64 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 FtsK_SpoIIIE PF01580.13 205 0.00011 14.7 0.0 1 1 2.1e-06 0.00022 13.7 0.0 41 59 155 173 135 184 0.85 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 2.2e-06 0.00023 14.5 0.0 15 33 156 174 147 217 0.82 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 1 3 0.0041 0.43 2.3 0.2 187 223 95 129 86 132 0.74 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 2 3 2.9e-06 0.0003 12.7 0.0 130 231 217 309 200 339 0.79 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 3 3 0.022 2.3 -0.0 0.0 139 160 345 366 314 376 0.63 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_37 - 1017 AAA_19 PF13245.1 76 0.00039 13.2 0.0 1 1 1.2e-05 0.0012 11.6 0.0 14 32 492 509 481 523 0.86 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_37 - 1017 AAA_10 PF12846.2 304 8e-42 136.6 0.0 1 1 4.6e-43 1.6e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_73 - 696 AAA_10 PF12846.2 304 6.7e-10 31.8 0.0 1 1 2.8e-11 9.9e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_24 - 388 AAA_10 PF12846.2 304 1.3e-06 21.0 0.0 1 1 2.1e-07 7.4e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 FAD_oxidored PF12831.2 428 6.3e-07 21.7 3.8 1 2 5.9e-09 6.3e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 FAD_oxidored PF12831.2 428 6.3e-07 21.7 3.8 2 2 0.01 1.1 1.2 0.0 84 120 305 341 261 364 0.71 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 DAO PF01266.19 358 7e-12 37.8 7.5 1 2 1.9e-08 2e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 DAO PF01266.19 358 7e-12 37.8 7.5 2 2 7.7e-09 8.1e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_37 - 1017 DUF2075 PF09848.4 352 0.00039 12.4 0.0 1 1 1e-05 0.0011 10.9 0.0 5 22 492 509 489 526 0.84 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_61 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 1 2 1.2e-06 0.00013 15.4 1.5 2 31 101 130 100 132 0.95 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 2 2 3.2e-17 3.3e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_5 - 287 Methyltransf_27 PF13708.1 194 6.4e-69 224.3 0.0 1 1 1e-70 1.1e-68 223.6 0.0 2 194 89 282 88 282 0.98 # 2079 # 2939 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_73 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 1 3 1.7e-05 0.0018 9.8 0.0 16 36 134 154 125 158 0.88 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_73 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 2 3 9.3e-05 0.0098 7.4 0.1 93 140 235 281 229 303 0.80 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_73 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 3 3 0.083 8.8 -2.3 0.0 293 323 482 512 405 546 0.58 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_24 - 388 GTP_EFTU PF00009.22 188 0.0012 11.3 0.0 1 1 2e-05 0.0021 10.5 0.0 8 34 157 183 155 195 0.87 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 RNA_helicase PF00910.17 107 0.0012 12.1 0.0 1 1 2.5e-05 0.0026 10.9 0.0 3 26 157 180 156 197 0.81 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 AlaDh_PNT_C PF01262.16 168 9e-07 21.6 2.3 1 2 3.9e-06 0.00042 12.9 0.3 16 50 94 128 80 131 0.87 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 AlaDh_PNT_C PF01262.16 168 9e-07 21.6 2.3 2 2 0.00012 0.012 8.1 0.1 19 60 269 310 260 341 0.84 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 NACHT PF05729.7 166 0.00036 13.2 0.0 1 1 6.6e-06 0.0007 12.3 0.0 4 29 156 181 154 188 0.83 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 AAA_25 PF13481.1 194 6e-06 18.8 0.0 1 1 1.1e-07 1.2e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/65a3709e-82bb-4d65-a3ed-51c4cae0df31 # Target file: checkm_output/bins/pm1327/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1327/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/65a3709e-82bb-4d65-a3ed-51c4cae0df31 checkm_output/bins/pm1327/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:40 2020 # [ok]