# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 519 UPF0020 PF01170.13 180 1.9e-09 30.2 0.0 1 1 2.7e-10 1.3e-08 27.4 0.0 16 117 207 304 196 311 0.77 # 28608 # 30164 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_58 - 1096 UPF0020 PF01170.13 180 0.00046 12.6 0.0 1 2 0.024 1.2 1.5 0.0 28 50 851 873 848 906 0.86 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 1096 UPF0020 PF01170.13 180 0.00046 12.6 0.0 2 2 0.00025 0.012 8.0 0.0 86 116 978 1008 973 1014 0.91 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_29 - 495 Terminase_6 PF03237.10 384 1.7e-06 19.8 0.1 1 1 3.9e-08 3.7e-06 18.7 0.1 6 317 58 380 55 426 0.74 # 23265 # 24749 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_65 - 402 MipZ PF09140.6 261 1.1e-06 20.7 1.4 1 2 3.3e-05 0.0032 9.4 0.1 1 50 110 164 110 191 0.76 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 402 MipZ PF09140.6 261 1.1e-06 20.7 1.4 2 2 2.6e-05 0.0025 9.7 0.0 89 135 236 282 213 287 0.82 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_58 - 1096 DNA_methylase PF00145.12 335 1.6e-33 109.1 0.0 1 4 3.3e-11 3.2e-09 29.1 0.0 5 71 8 78 6 81 0.94 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 1096 DNA_methylase PF00145.12 335 1.6e-33 109.1 0.0 2 4 1.5e-10 1.5e-08 27.0 0.0 71 119 419 476 415 486 0.90 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 1096 DNA_methylase PF00145.12 335 1.6e-33 109.1 0.0 3 4 1.8e-15 1.7e-13 43.2 0.0 136 308 533 747 528 757 0.58 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_58 - 1096 DNA_methylase PF00145.12 335 1.6e-33 109.1 0.0 4 4 0.0015 0.14 4.0 0.0 312 334 782 804 771 805 0.88 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_13 - 796 Helicase_C PF00271.26 78 1.6e-09 30.4 0.0 1 1 4.5e-11 4.3e-09 29.0 0.0 16 78 460 523 440 523 0.86 # 10611 # 12998 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_65 - 402 ArsA_ATPase PF02374.10 305 0.00037 12.4 0.0 1 1 1e-05 0.00097 11.0 0.0 4 136 113 255 110 257 0.66 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 402 Methyltransf_24 PF13578.1 106 0.00048 13.8 0.1 1 1 2.9e-05 0.0028 11.4 0.1 4 79 120 255 117 268 0.59 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 402 VirC1 PF07015.6 231 0.0006 11.8 0.0 1 2 0.015 1.4 0.7 0.0 4 26 112 134 110 141 0.83 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 402 VirC1 PF07015.6 231 0.0006 11.8 0.0 2 2 8.2e-05 0.0079 8.1 0.0 83 138 245 301 217 354 0.80 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 402 Fer4_NifH PF00142.13 273 1.1e-05 17.6 0.0 1 1 2.4e-07 2.3e-05 16.5 0.0 7 73 117 188 112 198 0.79 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_6 - 640 AAA_13 PF13166.1 712 0.0029 8.9 11.5 1 2 2.9e-06 0.00027 12.3 6.4 376 466 197 282 151 283 0.77 # 2525 # 4444 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 1_6 - 640 AAA_13 PF13166.1 712 0.0029 8.9 11.5 2 2 0.05 4.8 -1.8 0.2 368 399 563 594 529 634 0.51 # 2525 # 4444 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 1_65 - 402 CbiA PF01656.18 195 3.2e-24 78.2 0.0 1 1 7.1e-26 6.8e-24 77.2 0.0 1 168 112 327 112 351 0.71 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 455 KaiC PF06745.8 227 5.5e-06 18.5 0.0 1 1 1.5e-07 1.4e-05 17.1 0.0 9 66 190 253 184 275 0.83 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_86 - 279 HI0933_like PF03486.9 409 0.00071 10.9 0.0 1 1 1.1e-05 0.001 10.4 0.0 60 123 27 89 19 109 0.79 # 79577 # 80413 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.456 1_36 - 519 N6_Mtase PF02384.11 311 1.4e-118 388.3 1.1 1 1 3.9e-120 1.9e-118 387.9 1.1 2 310 171 479 170 480 0.97 # 28608 # 30164 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_10 - 417 N6_Mtase PF02384.11 311 3.7e-12 38.7 0.0 1 1 2e-12 9.6e-11 34.1 0.0 93 249 145 291 67 296 0.74 # 7634 # 8884 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_65 - 402 AAA_31 PF13614.1 157 4.9e-07 22.6 0.0 1 2 5.6e-05 0.0027 10.5 0.0 2 66 111 178 110 218 0.78 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_65 - 402 AAA_31 PF13614.1 157 4.9e-07 22.6 0.0 2 2 0.0001 0.0048 9.7 0.0 109 148 237 275 235 280 0.86 # 58855 # 60060 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 455 AAA_31 PF13614.1 157 5.9e-05 15.9 0.0 1 1 2.9e-06 0.00014 14.7 0.0 5 43 210 249 208 260 0.89 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_54 - 455 AAA_33 PF13671.1 143 0.00018 14.3 0.2 1 3 0.086 8.2 -0.9 0.0 46 79 134 172 102 182 0.69 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_54 - 455 AAA_33 PF13671.1 143 0.00018 14.3 0.2 2 3 3.9e-05 0.0038 10.0 0.0 2 42 209 248 208 327 0.60 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_54 - 455 AAA_33 PF13671.1 143 0.00018 14.3 0.2 3 3 0.036 3.4 0.4 0.1 88 123 350 383 331 394 0.72 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_54 - 455 DnaB_C PF03796.10 259 1e-109 358.2 0.2 1 1 1.6e-111 1.5e-109 357.6 0.2 1 257 188 445 188 447 0.98 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_36 - 519 Methyltransf_26 PF13659.1 117 3.1e-13 42.7 0.0 1 1 3.5e-14 1.1e-12 40.9 0.0 3 114 220 354 218 357 0.73 # 28608 # 30164 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_10 - 417 Methyltransf_26 PF13659.1 117 3.1e-10 33.0 0.0 1 1 2.1e-11 6.6e-10 31.9 0.0 5 116 116 225 112 226 0.81 # 7634 # 8884 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_58 - 1096 Methyltransf_26 PF13659.1 117 1.5e-05 17.9 0.0 1 1 1.2e-06 3.9e-05 16.6 0.0 1 83 852 1011 852 1060 0.70 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_29 - 495 AAA_30 PF13604.1 196 3.6e-05 16.3 0.0 1 1 3.7e-06 0.00036 13.0 0.0 5 127 37 189 35 194 0.70 # 23265 # 24749 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_54 - 455 FtsK_SpoIIIE PF01580.13 205 0.00024 13.5 0.2 1 2 5.9e-05 0.0057 9.0 0.0 35 67 203 235 177 250 0.82 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_54 - 455 FtsK_SpoIIIE PF01580.13 205 0.00024 13.5 0.2 2 2 0.012 1.1 1.4 0.1 71 124 319 366 313 400 0.74 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_36 - 519 MTS PF05175.9 170 2.3e-06 19.9 0.7 1 1 6.7e-08 6.4e-06 18.5 0.0 31 140 217 355 200 373 0.82 # 28608 # 30164 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_36 - 519 Eco57I PF07669.6 106 1.7e-07 24.5 0.2 1 2 3e-07 1.4e-05 18.3 0.0 3 104 294 406 291 408 0.81 # 28608 # 30164 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_36 - 519 Eco57I PF07669.6 106 1.7e-07 24.5 0.2 2 2 0.015 0.74 3.1 0.1 54 85 412 444 409 461 0.79 # 28608 # 30164 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_10 - 417 Eco57I PF07669.6 106 9e-06 18.9 0.0 1 1 3.4e-07 1.6e-05 18.1 0.0 3 101 174 271 172 276 0.87 # 7634 # 8884 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_54 - 455 AAA_19 PF13245.1 76 0.00051 12.7 0.0 1 1 1.5e-05 0.0014 11.2 0.0 9 48 205 241 198 264 0.82 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_38 - 1039 ResIII PF04851.10 184 5.6e-37 120.2 1.3 1 1 4.5e-38 2.2e-36 118.3 0.1 3 183 271 439 269 440 0.90 # 31518 # 34634 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.438 1_12 - 394 ResIII PF04851.10 184 0.00027 13.6 0.0 1 1 8.8e-06 0.00042 13.0 0.0 5 76 244 312 199 333 0.77 # 9401 # 10582 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_79 - 180 DUF3584 PF12128.3 1201 0.01 5.9 32.5 1 1 0.00013 0.013 5.6 32.5 606 752 20 172 13 178 0.71 # 71583 # 72122 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.433 1_38 - 1039 DEAD PF00270.24 169 3.1e-09 29.4 0.0 1 1 2.3e-10 1.1e-08 27.6 0.0 22 142 308 424 293 441 0.75 # 31518 # 34634 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.438 1_12 - 394 DEAD PF00270.24 169 0.00024 13.5 0.0 1 1 1.1e-05 0.00053 12.4 0.0 2 103 245 349 244 368 0.69 # 9401 # 10582 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_6 - 640 Kinesin-relat_1 PF12711.2 86 0.00075 12.8 4.4 1 2 0.0034 0.32 4.3 0.3 8 42 196 230 191 238 0.81 # 2525 # 4444 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 1_6 - 640 Kinesin-relat_1 PF12711.2 86 0.00075 12.8 4.4 2 2 0.00014 0.013 8.8 0.4 7 37 251 281 246 284 0.91 # 2525 # 4444 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 1_58 - 1096 MethyltransfD12 PF02086.10 260 4.1e-56 183.1 0.0 1 1 6e-58 5.8e-56 182.6 0.0 1 250 834 1067 834 1077 0.93 # 50528 # 53815 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_54 - 455 AAA_25 PF13481.1 194 1.1e-15 50.4 0.1 1 1 2.2e-17 2.1e-15 49.5 0.1 9 190 183 368 174 372 0.83 # 46535 # 47899 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.482 1_13 - 796 SNF2_N PF00176.18 299 2.6e-10 32.4 0.0 1 1 1.6e-11 7.8e-10 30.8 0.0 121 294 38 269 11 274 0.79 # 10611 # 12998 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.523 1_12 - 394 SNF2_N PF00176.18 299 1.2e-08 26.9 0.0 1 1 3.9e-10 1.9e-08 26.3 0.0 27 91 259 320 236 361 0.88 # 9401 # 10582 # 1 # ID=1_12;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dddd92fa-2a48-4a79-95c6-4d705099252c # Target file: checkm_output/bins/pm132/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm132/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dddd92fa-2a48-4a79-95c6-4d705099252c checkm_output/bins/pm132/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:34 2020 # [ok]