# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 373 UPF0020 PF01170.13 180 9.3e-09 23.7 0.0 1 3 5.5e-06 2.8e-05 12.4 0.0 100 129 99 129 83 133 0.76 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 UPF0020 PF01170.13 180 9.3e-09 23.7 0.0 2 3 0.067 0.34 -0.9 0.0 103 124 266 287 256 291 0.78 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 UPF0020 PF01170.13 180 9.3e-09 23.7 0.0 3 3 0.00019 0.00096 7.4 0.0 28 73 318 352 300 361 0.78 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 N6_N4_Mtase PF01555.13 231 3.8e-21 64.2 0.0 1 1 1.7e-21 8.3e-21 63.1 0.0 1 231 107 358 107 358 0.79 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 N6_Mtase PF02384.11 311 1e-05 13.3 0.0 1 2 4.3e-05 0.00022 9.0 0.0 110 147 91 128 83 138 0.80 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 N6_Mtase PF02384.11 311 1e-05 13.3 0.0 2 2 0.0056 0.028 2.0 0.0 31 66 303 338 301 356 0.84 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 Methyltransf_26 PF13659.1 117 4.5e-13 38.0 0.0 1 2 4.9e-06 2.5e-05 13.1 0.0 59 114 96 189 54 192 0.78 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 Methyltransf_26 PF13659.1 117 4.5e-13 38.0 0.0 2 2 5.7e-09 2.8e-08 22.5 0.0 4 46 322 363 319 369 0.92 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 MethyltransfD12 PF02086.10 260 5.1e-05 11.4 0.0 1 2 0.021 0.1 0.6 0.0 175 197 104 126 72 128 0.74 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 MethyltransfD12 PF02086.10 260 5.1e-05 11.4 0.0 2 2 8.4e-05 0.00042 8.4 0.0 20 50 318 348 304 366 0.75 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 Methyltransf_15 PF09445.5 164 9.2e-07 17.2 0.0 1 2 0.00026 0.0013 7.0 0.0 57 91 94 127 81 133 0.85 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 1_4 - 373 Methyltransf_15 PF09445.5 164 9.2e-07 17.2 0.0 2 2 0.00015 0.00075 7.7 0.0 3 39 321 357 319 361 0.85 # 2884 # 4002 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c13c503b-713a-4da9-96ce-a36dfdbaf384 # Target file: checkm_output/bins/pm1318/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1318/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c13c503b-713a-4da9-96ce-a36dfdbaf384 checkm_output/bins/pm1318/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:31 2020 # [ok]