# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_4 - 237 Mg_chelatase PF01078.16 207 0.00067 12.0 0.0 1 1 8.8e-06 0.001 11.4 0.0 18 52 31 65 21 88 0.80 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_27 - 226 UPF0020 PF01170.13 180 2.5e-06 20.3 0.0 1 2 8.1e-05 0.0096 8.6 0.0 102 124 16 38 3 89 0.70 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 226 UPF0020 PF01170.13 180 2.5e-06 20.3 0.0 2 2 3.6e-05 0.0043 9.8 0.0 27 53 162 188 158 216 0.74 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_96 - 341 cobW PF02492.14 178 0.0015 11.1 0.0 1 1 2.2e-05 0.0026 10.3 0.0 4 30 5 31 3 51 0.72 # 81979 # 83001 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_14 - 389 MipZ PF09140.6 261 1.8e-06 20.3 0.4 1 2 1.5e-06 0.00017 13.8 0.0 2 47 108 153 107 157 0.88 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_14 - 389 MipZ PF09140.6 261 1.8e-06 20.3 0.4 2 2 0.00092 0.11 4.7 0.1 87 134 223 270 197 291 0.85 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_36 - 185 SSB PF00436.20 104 5.6e-43 138.3 0.5 1 1 5.7e-45 6.8e-43 138.0 0.5 1 100 6 109 6 113 0.95 # 33195 # 33749 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.598 1_88 - 318 Methyltransf_18 PF12847.2 112 1.6e-05 18.6 0.1 1 2 0.00011 0.013 9.3 0.1 28 110 37 123 17 125 0.69 # 74616 # 75569 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 1_88 - 318 Methyltransf_18 PF12847.2 112 1.6e-05 18.6 0.1 2 2 0.00057 0.068 6.9 0.0 17 44 235 262 228 298 0.76 # 74616 # 75569 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 1_96 - 341 UvrD_C_2 PF13538.1 104 4.1e-06 20.1 0.0 1 1 7.5e-08 8.8e-06 19.0 0.0 33 104 243 330 221 330 0.75 # 81979 # 83001 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.553 2_2 - 282 Usp PF00582.21 140 5.4e-38 123.5 0.0 1 3 2.6e-20 3.1e-18 59.5 0.1 4 140 10 158 7 158 0.95 # 1761 # 2606 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_2 - 282 Usp PF00582.21 140 5.4e-38 123.5 0.0 2 3 0.0008 0.094 6.1 0.0 4 22 166 184 164 202 0.78 # 1761 # 2606 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_2 - 282 Usp PF00582.21 140 5.4e-38 123.5 0.0 3 3 7.9e-19 9.3e-17 54.7 0.0 76 140 217 281 199 281 0.86 # 1761 # 2606 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_63 - 864 DUF87 PF01935.12 229 2e-05 17.6 0.0 1 1 5.1e-07 6.1e-05 16.0 0.0 26 214 477 656 474 670 0.68 # 49628 # 52219 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.544 1_89 - 511 AAA_22 PF13401.1 131 5.1e-07 23.1 2.5 1 2 3e-06 0.00012 15.4 0.2 8 122 39 202 34 208 0.62 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_22 PF13401.1 131 5.1e-07 23.1 2.5 2 2 0.015 0.61 3.4 0.1 10 37 289 325 280 461 0.43 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 AAA_22 PF13401.1 131 4.1e-06 20.1 0.1 1 1 1.1e-06 4.4e-05 16.8 0.1 9 100 40 179 35 211 0.55 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_96 - 341 AAA_22 PF13401.1 131 4.6e-05 16.7 0.0 1 1 6.8e-06 0.00027 14.3 0.0 8 111 5 155 4 167 0.79 # 81979 # 83001 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_27 - 226 Methyltransf_11 PF08241.7 95 0.00073 13.2 0.0 1 3 0.045 5.3 0.8 0.0 46 65 4 25 2 28 0.77 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 226 Methyltransf_11 PF08241.7 95 0.00073 13.2 0.0 2 3 0.0035 0.41 4.4 0.0 78 93 53 68 46 70 0.83 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 226 Methyltransf_11 PF08241.7 95 0.00073 13.2 0.0 3 3 0.0046 0.54 4.0 0.0 5 40 172 206 168 223 0.68 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_19 - 478 DNA_methylase PF00145.12 335 3.2e-79 259.5 0.0 1 1 5.5e-81 6.5e-79 258.5 0.0 1 331 96 457 96 460 0.86 # 20536 # 21969 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 3_4 - 237 KAP_NTPase PF07693.9 325 0.00032 12.9 0.1 1 2 2.1e-05 0.0025 9.9 0.0 14 40 29 55 22 84 0.89 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 KAP_NTPase PF07693.9 325 0.00032 12.9 0.1 2 2 0.013 1.5 0.8 0.1 184 225 178 219 168 228 0.86 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 AAA_15 PF13175.1 415 1.2e-06 20.9 0.0 1 2 0.00027 0.016 7.3 0.0 27 43 40 56 18 77 0.83 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 AAA_15 PF13175.1 415 1.2e-06 20.9 0.0 2 2 1.2e-05 0.00069 11.8 0.0 371 415 165 211 144 211 0.90 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 AAA_15 PF13175.1 415 4.7e-06 18.9 0.0 1 3 1.3e-05 0.00077 11.6 0.0 23 48 36 70 19 119 0.76 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_15 PF13175.1 415 4.7e-06 18.9 0.0 2 3 0.0043 0.25 3.4 0.0 360 397 159 192 133 205 0.77 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_15 PF13175.1 415 4.7e-06 18.9 0.0 3 3 0.055 3.3 -0.3 0.0 372 409 420 457 404 461 0.85 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_27 - 226 N6_N4_Mtase PF01555.13 231 6.8e-37 120.2 0.0 1 1 2.3e-36 2.7e-34 111.7 0.0 1 227 21 199 21 203 0.91 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 3_4 - 237 AAA_17 PF13207.1 121 2.9e-06 21.3 0.0 1 1 9.4e-08 5.6e-06 20.4 0.0 1 47 37 87 37 139 0.72 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 AAA_17 PF13207.1 121 0.00023 15.2 0.5 1 2 0.00036 0.021 8.8 0.0 4 29 40 90 37 196 0.60 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_17 PF13207.1 121 0.00023 15.2 0.5 2 2 0.015 0.87 3.6 0.0 2 19 286 303 285 331 0.91 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_21 PF13304.1 303 4.6e-17 56.0 0.1 1 2 3.6e-08 1.4e-06 21.6 0.1 2 270 38 177 37 204 0.50 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_21 PF13304.1 303 4.6e-17 56.0 0.1 2 2 6.5e-10 2.6e-08 27.3 0.0 219 292 365 452 335 457 0.76 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 AAA_21 PF13304.1 303 8.3e-13 42.0 0.0 1 2 2.1e-07 8.1e-06 19.1 0.0 3 22 39 58 37 106 0.83 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 AAA_21 PF13304.1 303 8.3e-13 42.0 0.0 2 2 4.5e-08 1.8e-06 21.2 0.0 234 302 145 211 141 212 0.92 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_18 - 713 AAA_21 PF13304.1 303 0.0026 10.8 4.3 1 2 0.00079 0.031 7.3 0.0 7 53 29 70 27 166 0.66 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_18 - 713 AAA_21 PF13304.1 303 0.0026 10.8 4.3 2 2 0.0059 0.23 4.4 0.3 118 298 286 488 229 490 0.66 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 3_4 - 237 MobB PF03205.9 140 0.00079 12.3 0.1 1 1 1.2e-05 0.0015 11.4 0.1 2 19 37 54 36 62 0.89 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_88 - 318 ADH_zinc_N PF00107.21 130 0.00011 14.9 3.4 1 2 0.00068 0.08 5.7 0.3 6 29 110 133 108 139 0.88 # 74616 # 75569 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 1_88 - 318 ADH_zinc_N PF00107.21 130 0.00011 14.9 3.4 2 2 7.7e-05 0.0091 8.7 0.1 5 35 233 264 230 291 0.74 # 74616 # 75569 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 1_14 - 389 ArsA_ATPase PF02374.10 305 1.3e-06 20.7 0.3 1 2 1.2e-06 0.00015 14.0 0.1 8 36 114 142 107 151 0.87 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_14 - 389 ArsA_ATPase PF02374.10 305 1.3e-06 20.7 0.3 2 2 0.00091 0.11 4.6 0.0 122 136 230 244 218 251 0.81 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_89 - 511 Zeta_toxin PF06414.7 201 0.00044 12.5 0.2 1 2 0.00023 0.027 6.7 0.0 21 53 40 73 36 84 0.85 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 Zeta_toxin PF06414.7 201 0.00044 12.5 0.2 2 2 0.0028 0.33 3.1 0.0 18 49 285 317 275 320 0.85 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 SMC_N PF02463.14 220 5.1e-09 28.8 0.0 1 2 0.00032 0.013 7.9 0.1 26 44 37 55 23 75 0.83 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 SMC_N PF02463.14 220 5.1e-09 28.8 0.0 2 2 1.5e-07 5.8e-06 18.8 0.0 133 212 144 221 120 228 0.84 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 SMC_N PF02463.14 220 6e-06 18.7 0.2 1 3 0.0002 0.0079 8.5 0.0 22 42 33 53 25 61 0.87 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 SMC_N PF02463.14 220 6e-06 18.7 0.2 2 3 0.0025 0.1 4.9 0.0 137 212 147 219 67 225 0.79 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 SMC_N PF02463.14 220 6e-06 18.7 0.2 3 3 0.024 0.94 1.7 0.0 135 196 391 456 260 467 0.78 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_18 - 713 SMC_N PF02463.14 220 3.7e-05 16.2 0.3 1 2 0.00019 0.0076 8.6 0.0 16 52 13 49 2 57 0.77 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_18 - 713 SMC_N PF02463.14 220 3.7e-05 16.2 0.3 2 2 0.0014 0.053 5.8 0.1 135 186 307 471 86 506 0.75 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_14 - 389 VirC1 PF07015.6 231 3.5e-05 16.1 0.0 1 2 0.00018 0.021 7.0 0.0 4 42 109 147 107 154 0.92 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_14 - 389 VirC1 PF07015.6 231 3.5e-05 16.1 0.0 2 2 0.00021 0.024 6.8 0.0 84 140 235 291 222 317 0.77 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_89 - 511 AAA_16 PF13191.1 185 1.8e-07 24.4 0.6 1 2 2.8e-05 0.0011 12.1 0.0 28 180 39 195 29 202 0.59 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_16 PF13191.1 185 1.8e-07 24.4 0.6 2 2 9.8e-05 0.0038 10.3 0.1 24 158 283 425 271 455 0.68 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 AAA_16 PF13191.1 185 1.5e-05 18.2 1.5 1 1 8.9e-07 3.5e-05 17.0 1.5 23 51 34 62 23 208 0.83 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_63 - 864 AAA_16 PF13191.1 185 0.00017 14.8 0.0 1 1 2e-05 0.00078 12.6 0.0 26 56 476 507 461 597 0.86 # 49628 # 52219 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.544 1_18 - 713 AAA_23 PF13476.1 202 7.3e-08 26.1 7.5 1 1 1.3e-08 5.3e-07 23.3 7.5 2 88 3 241 2 387 0.51 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 3_4 - 237 AAA_23 PF13476.1 202 0.00028 14.3 0.0 1 1 1.1e-05 0.00042 13.8 0.0 21 40 37 56 23 70 0.85 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 AAA_23 PF13476.1 202 0.0003 14.3 0.1 1 1 2.1e-05 0.00082 12.9 0.0 15 37 30 53 22 84 0.84 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 AAA_18 PF13238.1 129 6.7e-05 16.4 0.0 1 2 6.4e-06 0.00076 13.0 0.0 1 18 38 55 38 99 0.76 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 AAA_18 PF13238.1 129 6.7e-05 16.4 0.0 2 2 0.024 2.9 1.4 0.0 28 87 155 212 126 224 0.69 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_18 - 713 AAA_13 PF13166.1 712 1.4e-18 59.8 7.7 1 3 1.1e-06 4.3e-05 15.2 0.1 15 76 20 95 7 146 0.63 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_18 - 713 AAA_13 PF13166.1 712 1.4e-18 59.8 7.7 2 3 0.00025 0.0098 7.4 1.5 232 389 184 383 172 386 0.57 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_18 - 713 AAA_13 PF13166.1 712 1.4e-18 59.8 7.7 3 3 2.3e-14 9.2e-13 40.6 0.2 421 572 336 490 316 523 0.74 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_89 - 511 AAA_13 PF13166.1 712 0.00011 13.9 0.0 1 1 3.8e-06 0.00015 13.4 0.0 23 114 42 133 29 158 0.73 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_11 - 512 AAA_13 PF13166.1 712 0.00052 11.6 0.2 1 1 2.1e-05 0.00082 11.0 0.2 360 440 4 84 2 102 0.90 # 10158 # 11693 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_14 - 389 CbiA PF01656.18 195 2.6e-37 121.2 0.0 1 1 2.9e-39 3.4e-37 120.9 0.0 1 194 109 339 109 340 0.80 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_89 - 511 AAA_14 PF13173.1 128 0.00016 14.7 0.1 1 2 1.6e-05 0.0018 11.3 0.0 3 49 36 82 34 137 0.79 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_14 PF13173.1 128 0.00016 14.7 0.1 2 2 0.07 8.3 -0.5 0.0 61 114 164 246 139 252 0.58 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 AAA_29 PF13555.1 62 3.3e-07 23.0 0.0 1 1 9.4e-09 5.5e-07 22.2 0.0 17 50 30 62 23 67 0.79 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 AAA_29 PF13555.1 62 5.4e-06 19.1 0.5 1 1 3.9e-07 2.3e-05 17.0 0.0 22 40 34 52 24 60 0.83 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA PF00004.24 132 0.00085 12.7 0.3 1 1 0.00029 0.034 7.5 0.1 3 113 40 207 38 221 0.63 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_13 - 104 Val_tRNA-synt_C PF10458.4 66 0.00088 12.5 0.9 1 1 7.4e-06 0.00088 12.5 0.9 1 20 58 77 58 82 0.87 # 13252 # 13563 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_4 - 237 MMR_HSR1 PF01926.18 116 0.00039 13.5 0.0 1 2 1.3e-05 0.0015 11.7 0.0 2 19 38 55 37 98 0.90 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 MMR_HSR1 PF01926.18 116 0.00039 13.5 0.0 2 2 0.062 7.3 -0.2 0.0 45 90 164 207 102 227 0.65 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_49 - 278 N6_Mtase PF02384.11 311 2.2e-10 33.1 0.0 1 1 3e-12 3.5e-10 32.5 0.0 25 117 139 237 130 253 0.84 # 40248 # 41081 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_89 - 511 DUF258 PF03193.11 161 5.1e-06 18.9 0.0 1 1 1.9e-07 1.1e-05 17.8 0.0 33 66 33 66 16 75 0.84 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 DUF258 PF03193.11 161 0.0001 14.7 0.0 1 1 2.7e-06 0.00016 14.0 0.0 32 56 31 56 19 68 0.80 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_14 - 389 AAA_31 PF13614.1 157 1.3e-09 31.4 0.0 1 2 1.7e-08 2e-06 21.0 0.0 2 49 108 155 107 196 0.90 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_14 - 389 AAA_31 PF13614.1 157 1.3e-09 31.4 0.0 2 2 0.00016 0.018 8.1 0.1 110 152 227 268 220 272 0.84 # 13934 # 15100 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 3_4 - 237 AAA_33 PF13671.1 143 7.4e-05 15.8 0.6 1 1 3.5e-06 0.00021 14.4 0.6 1 19 37 55 37 209 0.92 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 AAA_33 PF13671.1 143 0.00051 13.1 0.3 1 2 0.002 0.12 5.4 0.1 2 22 38 58 37 180 0.78 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_33 PF13671.1 143 0.00051 13.1 0.3 2 2 0.0053 0.31 4.0 0.0 1 33 285 379 285 463 0.56 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_27 - 226 Methyltransf_26 PF13659.1 117 1.6e-12 40.6 0.0 1 2 1e-07 5.9e-06 19.5 0.0 53 112 3 69 2 74 0.75 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 226 Methyltransf_26 PF13659.1 117 1.6e-12 40.6 0.0 2 2 1.4e-07 8e-06 19.1 0.0 4 44 167 206 164 220 0.83 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_49 - 278 Methyltransf_26 PF13659.1 117 0.00067 12.9 0.0 1 1 6.2e-05 0.0037 10.5 0.0 3 63 171 238 170 267 0.81 # 40248 # 41081 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 3_4 - 237 AAA_30 PF13604.1 196 0.00073 12.3 0.1 1 1 1.4e-05 0.0016 11.1 0.0 17 45 34 62 26 80 0.82 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_63 - 864 FtsK_SpoIIIE PF01580.13 205 0.00079 12.1 0.1 1 2 6.3e-05 0.0075 8.9 0.0 38 63 472 499 459 501 0.85 # 49628 # 52219 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.544 1_63 - 864 FtsK_SpoIIIE PF01580.13 205 0.00079 12.1 0.1 2 2 0.03 3.5 0.1 0.0 76 165 526 619 524 623 0.77 # 49628 # 52219 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.544 1_89 - 511 ABC_tran PF00005.22 137 1.5e-58 190.2 0.1 1 2 3.6e-36 1.1e-34 112.9 0.0 1 137 25 175 25 175 0.92 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 ABC_tran PF00005.22 137 1.5e-58 190.2 0.1 2 2 1.3e-24 4e-23 75.4 0.0 3 136 275 427 273 428 0.94 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 ABC_tran PF00005.22 137 1.7e-33 109.0 0.0 1 1 7.6e-35 2.3e-33 108.6 0.0 1 137 25 176 25 176 0.92 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_18 - 713 ABC_tran PF00005.22 137 8.4e-08 25.8 0.0 1 2 0.00046 0.013 8.9 0.0 18 38 28 48 11 169 0.79 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_18 - 713 ABC_tran PF00005.22 137 8.4e-08 25.8 0.0 2 2 8.8e-06 0.00026 14.4 0.0 90 136 404 453 300 454 0.65 # 18094 # 20232 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_63 - 864 ABC_tran PF00005.22 137 0.0007 13.1 0.0 1 1 5.7e-05 0.0017 11.8 0.0 13 97 476 600 472 614 0.64 # 49628 # 52219 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.544 1_27 - 226 Cons_hypoth95 PF03602.10 183 6.7e-06 18.7 0.0 1 2 0.00019 0.022 7.2 0.0 112 167 18 75 2 82 0.67 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 226 Cons_hypoth95 PF03602.10 183 6.7e-06 18.7 0.0 2 2 3.6e-05 0.0043 9.6 0.0 41 63 162 184 145 216 0.76 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_88 - 318 UDPG_MGDP_dh_N PF03721.9 185 7.6e-05 15.3 0.6 1 2 0.00057 0.067 5.7 0.1 72 105 112 145 59 191 0.74 # 74616 # 75569 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 1_88 - 318 UDPG_MGDP_dh_N PF03721.9 185 7.6e-05 15.3 0.6 2 2 0.00012 0.014 7.9 0.0 12 48 230 268 228 296 0.83 # 74616 # 75569 # 1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.560 3_4 - 237 AAA_19 PF13245.1 76 0.00071 12.5 0.1 1 1 1.3e-05 0.0015 11.4 0.1 9 35 34 59 27 88 0.78 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_63 - 864 AAA_10 PF12846.2 304 4.4e-45 147.5 0.0 1 1 2.6e-46 1e-44 146.3 0.0 1 291 474 760 474 767 0.89 # 49628 # 52219 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.544 3_4 - 237 AAA_10 PF12846.2 304 4.3e-07 22.7 0.2 1 2 1.1e-05 0.00043 12.9 0.1 6 21 40 55 37 76 0.85 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 AAA_10 PF12846.2 304 4.3e-07 22.7 0.2 2 2 0.0003 0.012 8.2 0.0 218 267 163 212 107 222 0.79 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 AAA_10 PF12846.2 304 2.1e-06 20.5 3.0 1 2 0.00034 0.013 8.0 0.3 6 22 40 56 37 76 0.78 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 AAA_10 PF12846.2 304 2.1e-06 20.5 3.0 2 2 2.2e-05 0.00088 11.8 0.1 210 269 152 212 131 236 0.81 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 SbcCD_C PF13558.1 90 0.00046 13.3 0.1 1 1 0.00025 0.015 8.4 0.1 25 89 140 191 124 192 0.67 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 SbcCD_C PF13558.1 90 0.00053 13.1 0.1 1 2 0.0058 0.34 4.1 0.0 53 89 154 190 146 191 0.78 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 SbcCD_C PF13558.1 90 0.00053 13.1 0.1 2 2 0.0023 0.14 5.4 0.0 31 88 398 442 372 444 0.70 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_11 - 512 DUF3584 PF12128.3 1201 0.0013 9.2 3.3 1 1 1.6e-05 0.0019 8.6 3.3 304 377 12 86 3 100 0.88 # 10158 # 11693 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_96 - 341 Viral_helicase1 PF01443.13 234 2.1e-11 36.9 0.3 1 2 4.9e-07 5.7e-05 15.8 0.0 2 30 5 38 4 54 0.72 # 81979 # 83001 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_96 - 341 Viral_helicase1 PF01443.13 234 2.1e-11 36.9 0.3 2 2 1.1e-07 1.3e-05 18.0 0.5 63 233 133 330 121 331 0.62 # 81979 # 83001 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_63 - 864 TrwB_AAD_bind PF10412.4 386 4.4e-05 15.3 0.0 1 1 7.3e-07 8.6e-05 14.4 0.0 16 71 475 536 470 545 0.79 # 49628 # 52219 # 1 # ID=1_63;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.544 1_89 - 511 Sigma54_activ_2 PF14532.1 138 3.9e-05 16.9 0.1 1 3 0.0017 0.21 4.8 0.0 26 50 40 64 35 89 0.86 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 Sigma54_activ_2 PF14532.1 138 3.9e-05 16.9 0.1 2 3 0.018 2.2 1.5 0.0 69 109 164 205 108 217 0.78 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 Sigma54_activ_2 PF14532.1 138 3.9e-05 16.9 0.1 3 3 0.00059 0.07 6.3 0.0 23 71 285 333 280 345 0.82 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_27 - 226 MethyltransfD12 PF02086.10 260 0.00049 12.7 0.0 1 2 0.013 1.5 1.3 0.0 176 188 19 31 12 92 0.81 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 226 MethyltransfD12 PF02086.10 260 0.00049 12.7 0.0 2 2 4.6e-05 0.0054 9.3 0.0 20 46 163 189 148 198 0.78 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 3_4 - 237 ArgK PF03308.11 267 0.00017 13.5 0.1 1 1 2.2e-06 0.00026 12.9 0.1 19 53 25 59 11 68 0.82 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 UPF0079 PF02367.12 123 3.2e-06 20.0 0.1 1 2 0.00013 0.0079 9.0 0.0 11 36 31 56 22 67 0.85 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_89 - 511 UPF0079 PF02367.12 123 3.2e-06 20.0 0.1 2 2 0.00024 0.014 8.2 0.0 11 35 279 303 272 314 0.88 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 3_4 - 237 UPF0079 PF02367.12 123 0.00054 12.7 0.0 1 1 1.9e-05 0.0011 11.7 0.0 10 39 30 59 22 67 0.85 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_96 - 341 UvrD-helicase PF00580.16 315 7.9e-09 28.3 0.0 1 2 1.3e-05 0.0015 11.0 0.0 16 67 4 47 2 84 0.80 # 81979 # 83001 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_96 - 341 UvrD-helicase PF00580.16 315 7.9e-09 28.3 0.0 2 2 6e-07 7.1e-05 15.3 0.0 242 294 115 170 91 174 0.86 # 81979 # 83001 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.553 3_4 - 237 NACHT PF05729.7 166 0.0017 11.2 0.3 1 1 3.2e-05 0.0038 10.0 0.2 2 19 37 54 36 59 0.87 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 AAA_25 PF13481.1 194 1.7e-08 27.2 0.1 1 2 8.9e-08 5.2e-06 19.1 0.0 16 61 19 65 8 86 0.74 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 3_4 - 237 AAA_25 PF13481.1 194 1.7e-08 27.2 0.1 2 2 0.00096 0.057 5.9 0.0 161 188 180 206 172 209 0.85 # 3070 # 3780 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_89 - 511 AAA_25 PF13481.1 194 0.00049 12.6 0.2 1 1 7.8e-05 0.0046 9.5 0.0 31 51 33 53 26 63 0.87 # 75634 # 77166 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_27 - 226 Methyltransf_15 PF09445.5 164 0.00072 12.3 0.0 1 2 0.035 4.1 0.1 0.0 53 79 4 29 2 33 0.90 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 226 Methyltransf_15 PF09445.5 164 0.00072 12.3 0.0 2 2 4e-05 0.0048 9.6 0.0 3 32 166 195 164 208 0.85 # 28414 # 29091 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/81a3fb2d-5eab-49f1-b388-7d22a61463f9 # Target file: checkm_output/bins/pm1309/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1309/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/81a3fb2d-5eab-49f1-b388-7d22a61463f9 checkm_output/bins/pm1309/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:28 2020 # [ok]