# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_24 - 341 cobW PF02492.14 178 0.00034 13.5 0.0 1 1 6.8e-06 0.00097 12.0 0.0 3 29 155 180 153 197 0.71 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_5 - 260 IstB_IS21 PF01695.12 178 1.2e-65 213.6 0.0 1 1 2.2e-67 3.1e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_6 - 216 MipZ PF09140.6 261 5.8e-08 25.5 5.5 1 2 0.00031 0.044 6.2 0.6 6 22 7 23 2 39 0.83 # 3196 # 3843 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 2_6 - 216 MipZ PF09140.6 261 5.8e-08 25.5 5.5 2 2 5.1e-09 7.2e-07 21.9 0.5 83 150 59 126 33 154 0.83 # 3196 # 3843 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 1_65 - 145 SSB PF00436.20 104 1e-31 102.3 0.2 1 1 1.7e-33 1.2e-31 102.1 0.2 2 103 7 111 6 112 0.96 # 47776 # 48210 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 2_38 - 74 SSB PF00436.20 104 1.6e-26 85.6 0.0 1 1 2.7e-28 1.9e-26 85.4 0.0 1 65 6 71 6 72 0.98 # 27227 # 27448 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_74 - 388 DUF87 PF01935.12 229 0.00013 15.2 0.0 1 1 1.8e-06 0.00026 14.2 0.0 28 45 157 174 155 188 0.89 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 260 AAA_22 PF13401.1 131 1.8e-06 21.6 0.0 1 2 1.7e-05 0.00059 13.4 0.1 4 28 101 125 98 148 0.75 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 AAA_22 PF13401.1 131 1.8e-06 21.6 0.0 2 2 0.0033 0.12 6.0 0.0 77 101 151 178 124 201 0.64 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 AAA_22 PF13401.1 131 5.9e-06 19.9 0.0 1 1 3.9e-07 1.4e-05 18.7 0.0 4 30 152 178 149 243 0.84 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 AAA_22 PF13401.1 131 7.2e-05 16.4 0.0 1 1 4.6e-06 0.00016 15.2 0.0 2 67 150 228 148 259 0.68 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_87 - 1017 AAA_22 PF13401.1 131 0.00054 13.5 0.0 1 1 4.7e-05 0.0017 11.9 0.0 8 69 492 557 486 594 0.67 # 65304 # 68354 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_74 - 388 ATP_bind_1 PF03029.12 238 0.0012 11.8 0.0 1 1 1.3e-05 0.0019 11.2 0.0 1 25 157 181 157 191 0.84 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 KAP_NTPase PF07693.9 325 9.7e-05 14.8 0.0 1 1 1.6e-06 0.00022 13.6 0.0 18 53 150 183 135 225 0.78 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_24 - 341 AAA_17 PF13207.1 121 2.4e-05 18.5 0.0 1 1 1e-06 4.9e-05 17.6 0.0 1 64 154 226 154 275 0.61 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_87 - 1017 AAA_17 PF13207.1 121 6.4e-05 17.2 0.0 1 1 8.7e-06 0.00041 14.6 0.0 3 28 492 523 492 587 0.67 # 65304 # 68354 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 3_5 - 260 AAA_17 PF13207.1 121 0.00055 14.2 0.0 1 1 2e-05 0.00093 13.4 0.0 2 26 104 131 103 216 0.74 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 Miro PF08477.8 119 0.0013 12.6 0.0 1 1 2.1e-05 0.003 11.5 0.0 4 28 157 186 156 220 0.72 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_74 - 388 MobB PF03205.9 140 0.00075 12.6 0.0 1 1 1e-05 0.0015 11.7 0.0 4 25 156 177 154 190 0.85 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 260 PhoH PF02562.11 205 4.5e-07 22.7 0.1 1 1 5e-09 7.1e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 AFG1_ATPase PF03969.11 362 0.00043 12.5 0.0 1 1 5.8e-06 0.00083 11.6 0.0 64 214 103 251 81 258 0.78 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_24 - 341 T2SE PF00437.15 272 1.2e-47 155.4 0.0 1 1 2e-49 1.4e-47 155.2 0.0 7 270 31 302 25 304 0.94 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_74 - 388 T2SE PF00437.15 272 3.1e-23 75.4 0.0 1 1 6.7e-25 4.8e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 Zeta_toxin PF06414.7 201 0.00032 13.2 0.0 1 1 5.7e-06 0.0008 11.9 0.0 14 43 150 179 139 230 0.82 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_74 - 388 SMC_N PF02463.14 220 0.0014 11.2 0.0 1 1 1.8e-05 0.0025 10.4 0.0 25 50 153 178 146 195 0.81 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 Arch_ATPase PF01637.13 234 0.0001 15.4 0.0 1 1 1.4e-06 0.00019 14.5 0.0 6 50 140 181 139 227 0.76 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_24 - 341 AAA_16 PF13191.1 185 3.2e-06 20.6 0.0 1 1 1.2e-07 5.9e-06 19.8 0.0 20 57 148 185 138 228 0.75 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_5 - 260 AAA_16 PF13191.1 185 2.1e-05 18.0 2.4 1 1 3.6e-06 0.00017 15.0 0.1 23 51 100 128 86 149 0.80 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 AAA_16 PF13191.1 185 0.0009 12.6 0.0 1 1 3.7e-05 0.0017 11.7 0.0 25 50 153 178 141 211 0.84 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_74 - 388 AAA_23 PF13476.1 202 3.4e-06 20.9 0.8 1 1 7.7e-08 5.5e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 AAA_23 PF13476.1 202 3.8e-06 20.7 0.0 1 2 0.074 5.3 0.7 0.0 70 133 34 92 7 110 0.78 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_24 - 341 AAA_23 PF13476.1 202 3.8e-06 20.7 0.0 2 2 5.3e-07 3.8e-05 17.5 0.0 19 39 152 172 142 174 0.91 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_87 - 1017 AAA_18 PF13238.1 129 7.8e-05 16.4 0.1 1 1 8.3e-06 0.00059 13.6 0.0 2 19 492 509 492 562 0.79 # 65304 # 68354 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_24 - 341 AAA_18 PF13238.1 129 0.00011 15.9 0.0 1 1 3.9e-06 0.00028 14.6 0.0 2 23 156 179 156 225 0.76 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_6 - 216 CbiA PF01656.18 195 5.5e-05 16.0 2.7 1 1 1.8e-06 0.00013 14.8 2.7 3 174 6 156 4 174 0.67 # 3196 # 3843 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 3_5 - 260 CbiA PF01656.18 195 0.0014 11.5 0.0 1 1 2.5e-05 0.0018 11.1 0.0 3 42 105 145 104 254 0.75 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_24 - 341 KaiC PF06745.8 227 0.00052 12.5 0.0 1 1 2.5e-05 0.0018 10.8 0.0 16 81 149 210 138 253 0.72 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_74 - 388 KaiC PF06745.8 227 0.0011 11.5 0.0 1 1 2.7e-05 0.0019 10.7 0.0 11 59 144 191 137 201 0.76 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 260 AAA_14 PF13173.1 128 5e-07 23.1 0.0 1 2 1.7e-08 2.4e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 AAA_14 PF13173.1 128 5e-07 23.1 0.0 2 2 0.048 6.8 0.0 0.0 14 46 215 247 212 257 0.80 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 AAA_29 PF13555.1 62 1.2e-05 18.2 0.1 1 1 4.1e-07 2.9e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 AAA_29 PF13555.1 62 0.00046 13.1 0.0 1 1 1.8e-05 0.0013 11.7 0.0 21 40 150 169 144 170 0.82 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_5 - 260 AAA PF00004.24 132 3e-08 27.3 0.0 1 1 4.1e-10 5.8e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 Bac_DnaA PF00308.13 219 7.3e-09 28.9 0.0 1 1 7.8e-11 1.1e-08 28.4 0.0 36 136 103 201 90 209 0.84 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 DUF258 PF03193.11 161 0.0003 13.4 0.0 1 1 7.3e-06 0.00052 12.6 0.0 26 59 92 125 80 153 0.82 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 2_24 - 341 DUF258 PF03193.11 161 0.00084 12.0 0.0 1 1 2.1e-05 0.0015 11.2 0.0 22 69 138 186 123 196 0.81 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_74 - 388 Ribosomal_S5 PF00333.15 67 4.5e-05 16.6 0.1 1 2 0.00093 0.13 5.5 0.0 26 45 84 103 77 114 0.83 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_74 - 388 Ribosomal_S5 PF00333.15 67 4.5e-05 16.6 0.1 2 2 0.00012 0.017 8.4 0.0 21 54 242 274 230 278 0.91 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_18 - 696 TraG-D_C PF12696.2 128 0.00019 14.7 0.1 1 1 2.4e-06 0.00034 13.9 0.1 3 94 437 524 435 556 0.78 # 20166 # 22253 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 3_5 - 260 NTPase_1 PF03266.10 168 0.00033 13.8 0.1 1 2 0.0015 0.22 4.6 0.1 2 30 104 132 103 143 0.82 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 NTPase_1 PF03266.10 168 0.00033 13.8 0.1 2 2 0.0003 0.042 6.9 0.0 87 108 155 176 141 202 0.77 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 FtsK_SpoIIIE PF01580.13 205 0.00015 14.7 0.0 1 1 2.1e-06 0.0003 13.7 0.0 41 59 155 173 135 184 0.85 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 ABC_tran PF00005.22 137 0.00015 15.5 0.0 1 1 6.8e-06 0.00032 14.4 0.0 8 49 149 190 146 211 0.82 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_74 - 388 ABC_tran PF00005.22 137 0.00016 15.4 0.0 1 1 6.6e-06 0.00031 14.5 0.0 15 33 156 174 147 217 0.82 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 260 ABC_tran PF00005.22 137 0.00074 13.2 0.2 1 1 6.1e-05 0.0029 11.3 0.1 8 31 98 121 95 132 0.86 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_87 - 1017 AAA_19 PF13245.1 76 0.00053 13.2 0.0 1 1 2.3e-05 0.0017 11.6 0.0 14 32 492 509 481 523 0.86 # 65304 # 68354 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 3_5 - 260 AAA_19 PF13245.1 76 0.00095 12.3 0.2 1 1 5.3e-05 0.0037 10.5 0.0 11 35 103 126 95 157 0.81 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_87 - 1017 AAA_10 PF12846.2 304 1.1e-41 136.6 0.0 1 1 7.7e-43 2.2e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 65304 # 68354 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_27 - 860 AAA_10 PF12846.2 304 1.2e-33 110.1 0.0 1 1 8e-35 2.3e-33 109.3 0.0 7 303 480 770 475 771 0.91 # 17617 # 20196 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.422 1_18 - 696 AAA_10 PF12846.2 304 8.9e-10 31.8 0.0 1 1 4.7e-11 1.3e-09 31.2 0.0 2 292 134 503 133 514 0.76 # 20166 # 22253 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_74 - 388 AAA_10 PF12846.2 304 1.8e-06 21.0 0.0 1 1 3.5e-07 9.9e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 260 AAA_10 PF12846.2 304 5.3e-05 16.1 0.2 1 2 0.072 2 1.1 0.0 106 155 28 69 4 89 0.61 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 AAA_10 PF12846.2 304 5.3e-05 16.1 0.2 2 2 2.2e-05 0.00062 12.6 0.1 3 35 103 135 101 172 0.84 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_87 - 1017 DUF2075 PF09848.4 352 0.00052 12.4 0.0 1 1 1e-05 0.0015 10.9 0.0 5 22 492 509 489 526 0.84 # 65304 # 68354 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_55 - 287 Methyltransf_27 PF13708.1 194 8.6e-69 224.3 0.0 1 1 1e-70 1.5e-68 223.6 0.0 2 194 89 282 88 282 0.98 # 43247 # 44107 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_18 - 696 TrwB_AAD_bind PF10412.4 386 2.6e-06 19.6 0.9 1 3 1.7e-05 0.0024 9.8 0.0 16 36 134 154 125 158 0.88 # 20166 # 22253 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_18 - 696 TrwB_AAD_bind PF10412.4 386 2.6e-06 19.6 0.9 2 3 9.3e-05 0.013 7.4 0.1 93 140 235 281 229 303 0.80 # 20166 # 22253 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_18 - 696 TrwB_AAD_bind PF10412.4 386 2.6e-06 19.6 0.9 3 3 0.083 12 -2.3 0.0 293 323 482 512 405 546 0.58 # 20166 # 22253 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 3_5 - 260 Sigma54_activ_2 PF14532.1 138 0.00056 13.4 0.0 1 1 6.3e-06 0.00089 12.7 0.0 9 64 87 144 84 229 0.70 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 GTP_EFTU PF00009.22 188 0.0015 11.3 0.0 1 1 2e-05 0.0028 10.5 0.0 8 34 157 183 155 195 0.87 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_74 - 388 RNA_helicase PF00910.17 107 0.0016 12.1 0.0 1 1 2.5e-05 0.0035 10.9 0.0 3 26 157 180 156 197 0.81 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 Herpes_ori_bp PF02399.10 824 0.0016 9.7 0.0 1 1 1.8e-05 0.0026 9.1 0.0 47 78 150 180 137 184 0.85 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_24 - 341 UPF0079 PF02367.12 123 4.1e-06 19.9 0.0 1 1 4.9e-08 6.9e-06 19.1 0.0 7 44 144 181 138 186 0.85 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_6 - 216 AAA_24 PF13479.1 213 0.00067 12.7 0.3 1 1 1.4e-05 0.00097 12.1 0.3 10 76 9 82 1 152 0.90 # 3196 # 3843 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 3_5 - 260 AAA_24 PF13479.1 213 0.0019 11.2 0.1 1 1 6.1e-05 0.0043 10.0 0.1 5 23 103 121 99 127 0.85 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 NACHT PF05729.7 166 0.00018 14.6 0.0 1 1 6.2e-06 0.00029 13.9 0.0 3 49 104 151 102 200 0.81 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 NACHT PF05729.7 166 0.00048 13.2 0.0 1 1 2e-05 0.00094 12.3 0.0 4 29 156 181 154 188 0.83 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_24 - 341 NACHT PF05729.7 166 0.0012 11.9 0.0 1 1 5.5e-05 0.0026 10.8 0.0 3 28 155 180 153 233 0.64 # 15242 # 16264 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_5 - 260 AAA_25 PF13481.1 194 1e-06 21.7 0.1 1 1 4.4e-08 3.2e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_74 - 388 AAA_25 PF13481.1 194 8e-06 18.8 0.0 1 1 2.3e-07 1.6e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 53973 # 55136 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_28 - 271 IPT PF01745.11 233 0.0062 9.1 4.9 1 2 0.019 2.6 0.5 0.1 125 173 41 90 28 99 0.75 # 20193 # 21005 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.402 2_28 - 271 IPT PF01745.11 233 0.0062 9.1 4.9 2 2 3.5e-05 0.005 9.4 1.6 134 214 168 250 157 264 0.88 # 20193 # 21005 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.402 3_5 - 260 AAA_28 PF13521.1 163 0.00036 13.9 0.0 1 1 5e-06 0.00071 13.0 0.0 1 49 103 156 103 171 0.73 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 3_5 - 260 AAA_5 PF07728.9 139 2.6e-05 17.4 0.0 1 1 4.6e-07 6.5e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 5337 # 6116 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/360830e3-60aa-4225-ac86-d767b53be02d # Target file: checkm_output/bins/pm1307/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1307/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/360830e3-60aa-4225-ac86-d767b53be02d checkm_output/bins/pm1307/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:27 2020 # [ok]