# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 301 UPF0020 PF01170.13 180 1.2e-06 18.7 0.0 1 2 0.0008 0.014 5.4 0.0 100 139 37 81 21 95 0.62 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_7 - 301 UPF0020 PF01170.13 180 1.2e-06 18.7 0.0 2 2 1.3e-05 0.00023 11.2 0.0 24 42 241 259 225 291 0.84 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_5 - 206 MipZ PF09140.6 261 3e-11 33.3 0.1 1 1 2e-12 3.6e-11 33.0 0.1 4 51 5 51 2 108 0.87 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 YhjQ PF06564.7 244 1.8e-08 24.5 0.1 1 2 6.2e-07 1.1e-05 15.3 0.0 1 41 1 41 1 47 0.93 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 YhjQ PF06564.7 244 1.8e-08 24.5 0.1 2 2 0.0002 0.0035 7.1 0.0 195 234 160 199 152 205 0.88 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_7 - 301 Methyltransf_18 PF12847.2 112 1.6e-05 16.0 0.0 1 2 0.081 1.5 0.0 0.0 81 110 76 99 63 101 0.84 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_7 - 301 Methyltransf_18 PF12847.2 112 1.6e-05 16.0 0.0 2 2 5.5e-06 0.0001 13.4 0.0 10 52 254 292 245 299 0.80 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_7 - 301 Methyltransf_11 PF08241.7 95 7.3e-06 17.0 0.0 1 2 0.00046 0.0082 7.2 0.0 71 94 74 97 68 98 0.86 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_7 - 301 Methyltransf_11 PF08241.7 95 7.3e-06 17.0 0.0 2 2 0.00032 0.0057 7.7 0.0 6 46 255 294 250 300 0.76 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_5 - 206 SRP54 PF00448.17 196 3.6e-05 13.8 1.0 1 1 4.1e-06 7.5e-05 12.7 1.0 10 98 11 92 2 105 0.79 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_7 - 301 N6_N4_Mtase PF01555.13 231 1.9e-64 207.8 0.0 1 1 1.2e-65 2.2e-64 207.5 0.0 1 230 45 284 45 285 0.96 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_5 - 206 MobB PF03205.9 140 3.1e-06 17.4 0.1 1 1 2.7e-07 4.9e-06 16.8 0.1 9 84 11 81 3 105 0.76 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 ArsA_ATPase PF02374.10 305 6.7e-10 28.9 1.1 1 2 7.7e-11 1.4e-09 27.8 0.6 2 42 3 43 2 67 0.87 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 ArsA_ATPase PF02374.10 305 6.7e-10 28.9 1.1 2 2 0.046 0.83 -1.0 0.0 113 136 64 87 48 91 0.78 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 PhoH PF02562.11 205 1.1e-05 15.2 0.1 1 1 8.3e-07 1.5e-05 14.8 0.1 19 53 2 36 1 80 0.89 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 Zeta_toxin PF06414.7 201 2.2e-05 14.1 0.1 1 1 1.6e-06 3e-05 13.7 0.1 17 54 3 42 1 100 0.85 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 VirC1 PF07015.6 231 2.1e-09 27.2 0.2 1 1 2.2e-10 4e-09 26.3 0.2 1 183 1 171 1 192 0.77 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 Fer4_NifH PF00142.13 273 1.2e-05 15.0 0.0 1 1 9e-07 1.6e-05 14.6 0.0 2 44 3 46 2 93 0.82 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 CbiA PF01656.18 195 1.9e-21 66.8 2.7 1 1 2.2e-22 3.9e-21 65.8 2.7 1 146 4 129 4 163 0.84 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 AAA_31 PF13614.1 157 2.3e-09 27.8 0.1 1 2 1e-07 1.8e-06 18.4 0.0 3 41 4 42 2 46 0.91 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 AAA_31 PF13614.1 157 2.3e-09 27.8 0.1 2 2 0.00023 0.0042 7.5 0.0 108 155 67 114 57 116 0.81 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_7 - 301 Methyltransf_26 PF13659.1 117 2.7e-15 47.0 0.0 1 2 1.2e-07 2.1e-06 18.3 0.0 53 113 27 98 6 102 0.75 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_7 - 301 Methyltransf_26 PF13659.1 117 2.7e-15 47.0 0.0 2 2 2.9e-10 5.3e-09 26.7 0.0 2 46 247 290 246 300 0.87 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_5 - 206 AAA_19 PF13245.1 76 1.8e-05 15.0 0.5 1 1 1e-06 1.8e-05 15.0 0.5 20 48 12 36 10 46 0.90 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 AAA_10 PF12846.2 304 0.00011 12.1 0.0 1 1 9.2e-06 0.00016 11.6 0.0 11 47 12 50 5 133 0.70 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_7 - 301 Methyltransf_31 PF13847.1 152 3.4e-05 13.9 0.0 1 2 0.029 0.53 0.3 0.0 88 109 78 99 70 141 0.84 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_7 - 301 Methyltransf_31 PF13847.1 152 3.4e-05 13.9 0.0 2 2 1.4e-05 0.00025 11.2 0.0 4 51 246 290 243 299 0.87 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_18 - 239 DUF3584 PF12128.3 1201 0.0038 5.0 43.3 1 1 0.00027 0.0048 4.6 43.3 359 531 50 228 11 232 0.70 # 15332 # 16048 # -1 # ID=1_18;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.717 1_5 - 206 AAA_24 PF13479.1 213 0.0001 12.4 0.1 1 1 8e-06 0.00014 11.9 0.1 11 77 10 86 2 99 0.68 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_5 - 206 AAA_25 PF13481.1 194 4.3e-06 16.7 3.0 1 1 4.6e-06 8.3e-05 12.5 3.0 36 150 5 85 1 108 0.53 # 3398 # 4015 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.639 1_7 - 301 Methyltransf_15 PF09445.5 164 3.1e-05 14.0 0.0 1 2 6e-05 0.0011 9.0 0.0 54 100 29 75 26 91 0.80 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_7 - 301 Methyltransf_15 PF09445.5 164 3.1e-05 14.0 0.0 2 2 0.0046 0.083 2.9 0.0 3 40 248 285 246 297 0.83 # 5133 # 6035 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e0fba8df-0885-4a85-9a97-8609491bb08d # Target file: checkm_output/bins/pm1303/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1303/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e0fba8df-0885-4a85-9a97-8609491bb08d checkm_output/bins/pm1303/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:23 2020 # [ok]