# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 354 UPF0020 PF01170.13 180 3.2e-05 15.7 0.2 1 2 3.3e-05 0.0019 9.9 0.0 89 116 12 38 1 52 0.68 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_28 - 354 UPF0020 PF01170.13 180 3.2e-05 15.7 0.2 2 2 0.003 0.17 3.5 0.0 26 49 306 328 299 347 0.81 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_5 - 388 MipZ PF09140.6 261 0.00029 12.0 0.1 1 2 8.1e-05 0.0046 8.1 0.0 4 47 110 153 107 165 0.87 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 MipZ PF09140.6 261 0.00029 12.0 0.1 2 2 0.0065 0.37 1.8 0.0 87 126 223 262 198 349 0.72 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_28 - 354 Methyltransf_11 PF08241.7 95 0.00014 14.5 0.0 1 1 3.6e-05 0.0021 10.7 0.0 69 95 53 79 1 79 0.67 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_28 - 354 N6_N4_Mtase PF01555.13 231 9.2e-44 141.7 0.0 1 1 5.2e-45 3e-43 140.0 0.0 2 229 30 346 29 348 0.88 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_5 - 388 ArsA_ATPase PF02374.10 305 5.1e-07 21.0 0.1 1 2 5.6e-07 3.2e-05 15.1 0.0 5 36 111 142 108 151 0.88 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 ArsA_ATPase PF02374.10 305 5.1e-07 21.0 0.1 2 2 0.0024 0.13 3.3 0.0 125 136 233 244 223 254 0.84 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_39 - 570 Terminase_1 PF03354.10 477 1.6e-111 365.0 0.0 1 1 3.3e-113 1.9e-111 364.8 0.0 1 476 82 554 82 555 0.92 # 32137 # 33846 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_5 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 1 2 1.2e-05 0.00069 10.8 0.0 4 42 109 147 107 153 0.91 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 2 2 0.00029 0.016 6.3 0.3 83 198 234 348 222 380 0.73 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 CbiA PF01656.18 195 1.2e-30 98.4 0.0 1 1 2.8e-32 1.6e-30 98.1 0.0 1 174 109 320 109 340 0.79 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_13 - 1335 PCMT PF01135.14 210 8.2e-06 17.6 0.0 1 1 3.2e-07 1.8e-05 16.4 0.0 14 162 468 619 462 624 0.80 # 15691 # 19695 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_5 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 1 2 1.5e-08 8.8e-07 21.1 0.0 2 50 108 156 107 196 0.91 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 2 2 0.0027 0.15 4.1 0.0 116 151 230 267 207 272 0.81 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_28 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 1 2 3e-13 1.7e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_28 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 2 2 2.5e-06 0.00014 14.0 0.0 1 35 309 342 309 351 0.91 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_28 - 354 MTS PF05175.9 170 0.00016 13.2 0.0 1 1 6.1e-06 0.00035 12.1 0.0 73 154 3 97 1 107 0.73 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_13 - 1335 Herpes_ori_bp PF02399.10 824 2.1e-08 24.6 0.0 1 2 7.9e-08 4.5e-06 16.9 0.0 46 198 525 677 493 688 0.75 # 15691 # 19695 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 1335 Herpes_ori_bp PF02399.10 824 2.1e-08 24.6 0.0 2 2 0.00024 0.014 5.4 0.0 272 351 724 814 704 818 0.81 # 15691 # 19695 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 2_2 - 198 Lambda_tail_I PF06805.7 82 4.9e-20 63.4 0.0 1 1 1.4e-21 7.7e-20 62.7 0.0 1 82 4 89 4 89 0.99 # 4408 # 5001 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f5e65d9e-deba-4f93-b256-a566bb019003 # Target file: checkm_output/bins/pm1301/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1301/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f5e65d9e-deba-4f93-b256-a566bb019003 checkm_output/bins/pm1301/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:23 2020 # [ok]