# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 234 UPF0020 PF01170.13 180 2.9e-06 19.6 0.0 1 2 5.1e-05 0.0042 9.3 0.0 103 120 17 34 5 80 0.83 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_6 - 234 UPF0020 PF01170.13 180 2.9e-06 19.6 0.0 2 2 9.4e-05 0.0077 8.4 0.0 28 51 170 193 165 227 0.75 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 4_2 - 205 DUF1776 PF08643.5 299 3.9e-05 15.5 0.0 1 1 6.7e-07 5.5e-05 15.0 0.0 107 196 54 137 48 141 0.85 # 242 # 856 # 1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 2_13 - 209 MipZ PF09140.6 261 1.4e-21 69.3 0.5 1 2 1.2e-12 9.7e-11 33.8 0.0 2 53 2 52 1 60 0.89 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 MipZ PF09140.6 261 1.4e-21 69.3 0.5 2 2 1.6e-12 1.3e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 YhjQ PF06564.7 244 1.9e-05 16.7 0.3 1 2 1.8e-06 0.00015 13.8 0.3 4 38 3 37 1 50 0.89 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 YhjQ PF06564.7 244 1.9e-05 16.7 0.3 2 2 0.029 2.4 0.0 0.0 108 144 69 103 44 113 0.78 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 5_3 - 492 DNA_methylase PF00145.12 335 1.9e-79 259.8 0.0 1 1 4.9e-81 4e-79 258.7 0.0 1 331 110 471 110 474 0.86 # 352 # 1827 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 2_13 - 209 SRP54 PF00448.17 196 2.1e-07 23.2 0.1 1 1 1.5e-08 1.2e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_6 - 234 N6_N4_Mtase PF01555.13 231 9.4e-33 106.2 0.0 1 2 6.8e-13 5.6e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_6 - 234 N6_N4_Mtase PF01555.13 231 9.4e-33 106.2 0.0 2 2 2e-23 1.6e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_13 - 209 AAA_17 PF13207.1 121 1.8e-05 18.2 0.0 1 1 4.2e-07 3.5e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 MobB PF03205.9 140 4.9e-05 15.7 0.1 1 1 1.6e-06 0.00013 14.3 0.0 10 42 11 41 1 46 0.79 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 ArsA_ATPase PF02374.10 305 2.5e-08 25.8 0.4 1 2 1.2e-09 9.5e-08 24.0 0.1 3 48 3 48 1 69 0.85 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 ArsA_ATPase PF02374.10 305 2.5e-08 25.8 0.4 2 2 0.053 4.4 -1.2 0.0 121 135 69 85 47 86 0.75 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 VirC1 PF07015.6 231 2.3e-09 29.3 0.0 1 1 5.9e-11 4.9e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 Fer4_NifH PF00142.13 273 6.1e-05 14.9 0.0 1 1 2.3e-06 0.00019 13.3 0.0 8 38 9 39 2 46 0.89 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 4_2 - 205 adh_short PF00106.20 167 3.2e-23 75.1 0.0 1 1 4.8e-25 4e-23 74.8 0.0 47 166 5 127 1 128 0.96 # 242 # 856 # 1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 2_13 - 209 CbiA PF01656.18 195 2e-22 72.2 0.0 1 1 4.7e-24 3.9e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 4_2 - 205 KR PF08659.5 181 7.2e-07 21.6 0.0 1 1 1.1e-08 9.1e-07 21.3 0.0 47 174 4 138 1 144 0.78 # 242 # 856 # 1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 2_13 - 209 AAA_31 PF13614.1 157 3.5e-06 19.7 0.0 1 2 2.5e-07 2.1e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 AAA_31 PF13614.1 157 3.5e-06 19.7 0.0 2 2 0.055 4.5 -0.2 0.0 109 127 68 86 62 113 0.68 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_6 - 234 Methyltransf_26 PF13659.1 117 2.2e-11 36.5 0.2 1 2 3.2e-07 2.6e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_6 - 234 Methyltransf_26 PF13659.1 117 2.2e-11 36.5 0.2 2 2 2e-07 1.6e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 4_4 - 129 AAA_35 PF14516.1 331 0.00012 13.4 0.7 1 2 2.7e-06 0.00022 12.5 0.5 186 226 70 112 61 118 0.75 # 1686 # 2072 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 4_4 - 129 AAA_35 PF14516.1 331 0.00012 13.4 0.7 2 2 0.0024 0.2 2.8 0.1 180 214 93 127 90 128 0.90 # 1686 # 2072 # -1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 2_6 - 234 Cons_hypoth95 PF03602.10 183 3.3e-06 19.2 0.0 1 2 0.00016 0.013 7.4 0.0 113 169 19 77 12 86 0.70 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_6 - 234 Cons_hypoth95 PF03602.10 183 3.3e-06 19.2 0.0 2 2 3.1e-05 0.0026 9.8 0.0 20 60 149 188 142 225 0.73 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_13 - 209 AAA_19 PF13245.1 76 0.00046 12.6 0.1 1 2 9.6e-05 0.0079 8.6 0.0 20 48 11 35 9 44 0.84 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 AAA_19 PF13245.1 76 0.00046 12.6 0.1 2 2 0.022 1.8 1.1 0.0 42 62 135 155 118 180 0.75 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_13 - 209 AAA_10 PF12846.2 304 0.00013 14.1 0.0 1 1 5e-06 0.00021 13.4 0.0 11 39 11 39 3 67 0.90 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_5 - 134 AAA_10 PF12846.2 304 0.00054 12.0 0.0 1 2 0.00011 0.0045 9.0 0.0 240 264 13 37 6 47 0.89 # 1833 # 2234 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 3_5 - 134 AAA_10 PF12846.2 304 0.00054 12.0 0.0 2 2 0.028 1.1 1.1 0.0 209 235 106 130 70 132 0.72 # 1833 # 2234 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 4_2 - 205 adh_short_C2 PF13561.1 241 3.8e-23 75.1 0.0 1 1 5.1e-25 4.1e-23 74.9 0.0 40 239 4 200 1 202 0.94 # 242 # 856 # 1 # ID=4_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.514 3_5 - 134 Zot PF05707.7 193 0.00034 12.7 0.0 1 1 7.9e-06 0.00065 11.8 0.0 103 127 12 37 2 48 0.78 # 1833 # 2234 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_13 - 209 AAA_25 PF13481.1 194 0.00011 14.3 0.1 1 1 3.1e-06 0.00025 13.1 0.0 42 87 10 44 3 90 0.78 # 9895 # 10521 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_6 - 234 Methyltransf_15 PF09445.5 164 0.00061 12.0 0.0 1 2 0.023 1.9 0.6 0.0 53 80 4 30 2 38 0.91 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_6 - 234 Methyltransf_15 PF09445.5 164 0.00061 12.0 0.0 2 2 7e-05 0.0057 8.8 0.0 3 30 173 200 171 213 0.90 # 2971 # 3672 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/84a15408-4397-4231-898a-07dca15e414e # Target file: checkm_output/bins/pm13/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm13/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/84a15408-4397-4231-898a-07dca15e414e checkm_output/bins/pm13/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:22 2020 # [ok]