# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 6_9 - 264 ABC_ATPase PF09818.4 448 0.0062 8.8 1.8 1 2 0.00069 0.12 4.5 0.2 240 264 27 52 19 67 0.89 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 ABC_ATPase PF09818.4 448 0.0062 8.8 1.8 2 2 0.0022 0.38 2.9 0.1 376 420 182 226 129 237 0.83 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 2_19 - 389 MipZ PF09140.6 261 8.2e-06 18.7 0.4 1 2 3.5e-06 0.00063 12.6 0.0 2 47 108 153 107 157 0.87 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_19 - 389 MipZ PF09140.6 261 8.2e-06 18.7 0.4 2 2 0.0012 0.21 4.3 0.1 88 134 224 270 197 290 0.84 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 4_7 - 562 3HCDH_N PF02737.13 180 0.028 7.7 6.6 1 2 0.0086 1.5 2.1 2.8 1 30 100 129 100 133 0.93 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 3HCDH_N PF02737.13 180 0.028 7.7 6.6 2 2 0.0003 0.053 6.9 0.1 2 36 273 307 272 359 0.75 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 GIDA PF01134.17 392 4.6e-06 19.4 5.3 1 2 2.6e-08 4.6e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 GIDA PF01134.17 392 4.6e-06 19.4 5.3 2 2 0.01 1.8 1.0 0.3 349 385 390 426 376 430 0.79 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_20 - 181 SSB PF00436.20 104 1.8e-41 134.0 0.3 1 1 1.2e-43 2.2e-41 133.7 0.3 1 99 6 105 6 113 0.97 # 12232 # 12774 # -1 # ID=5_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.643 7_1 - 989 UvrD_C_2 PF13538.1 104 3.2e-07 24.2 0.2 1 1 9.4e-09 1.7e-06 21.9 0.1 3 100 575 676 573 680 0.76 # 1 # 2967 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.638 4_7 - 562 Pyr_redox_2 PF07992.9 201 1.3e-42 139.7 0.0 1 1 1.6e-44 2.8e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_17 - 144 Usp PF00582.21 140 2.5e-26 86.3 0.1 1 1 3.2e-28 2.9e-26 86.1 0.1 1 140 1 143 1 143 0.97 # 12749 # 13180 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 2_24 - 142 Usp PF00582.21 140 4.9e-05 17.3 0.2 1 1 7.5e-07 6.7e-05 16.8 0.2 2 138 4 136 3 138 0.81 # 20125 # 20550 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.498 1_18 - 880 DUF87 PF01935.12 229 7.4e-06 19.6 0.0 1 1 1.2e-07 2.1e-05 18.1 0.0 26 223 484 675 479 681 0.76 # 16777 # 19416 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 6_9 - 264 AAA_22 PF13401.1 131 0.00049 14.0 0.6 1 3 0.00015 0.027 8.3 0.1 7 25 35 53 29 82 0.86 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA_22 PF13401.1 131 0.00049 14.0 0.6 2 3 0.019 3.4 1.5 0.0 85 122 155 200 108 208 0.73 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA_22 PF13401.1 131 0.00049 14.0 0.6 3 3 0.0063 1.1 3.1 0.1 55 98 182 230 149 239 0.57 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_7 - 562 Trp_halogenase PF04820.9 454 0.008 8.5 3.3 1 1 8.1e-05 0.014 7.6 3.3 1 47 100 143 100 151 0.76 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 NAD_binding_7 PF13241.1 103 6.9e-06 20.0 1.2 1 2 1.9e-05 0.0033 11.4 0.2 9 38 100 129 96 164 0.90 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 NAD_binding_7 PF13241.1 103 6.9e-06 20.0 1.2 2 2 0.00049 0.087 6.9 0.1 8 45 271 314 264 382 0.66 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_9 - 264 AAA_21 PF13304.1 303 1.5e-12 41.7 0.1 1 2 8.5e-05 0.015 8.9 0.1 3 25 36 59 34 78 0.80 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA_21 PF13304.1 303 1.5e-12 41.7 0.1 2 2 2.1e-11 3.7e-09 30.6 0.0 232 299 139 204 114 207 0.90 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 Miro PF08477.8 119 0.0014 12.8 0.0 1 1 1.6e-05 0.0028 11.9 0.0 3 27 36 59 35 85 0.80 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 3_10 - 342 ADH_zinc_N PF00107.21 130 3.3e-09 30.1 0.2 1 1 3.5e-11 6.2e-09 29.2 0.2 2 67 175 239 174 277 0.88 # 8260 # 9285 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.642 2_19 - 389 ArsA_ATPase PF02374.10 305 3e-06 20.1 0.4 1 2 1.7e-06 0.00029 13.6 0.1 9 36 115 142 109 151 0.89 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_19 - 389 ArsA_ATPase PF02374.10 305 3e-06 20.1 0.4 2 2 0.0011 0.2 4.3 0.0 123 136 231 244 221 250 0.83 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 7_1 - 989 PhoH PF02562.11 205 0.00033 13.6 0.2 1 2 1.1e-05 0.0019 11.1 0.1 5 61 206 266 203 283 0.84 # 1 # 2967 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.638 7_1 - 989 PhoH PF02562.11 205 0.00033 13.6 0.2 2 2 0.051 9 -0.9 0.0 118 159 299 341 270 349 0.83 # 1 # 2967 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.638 4_7 - 562 NAD_binding_8 PF13450.1 68 0.00012 15.8 1.2 1 1 6.9e-07 0.00012 15.8 1.2 1 35 103 136 103 155 0.91 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_19 - 389 VirC1 PF07015.6 231 0.00012 14.9 0.0 1 2 0.00028 0.05 6.3 0.0 4 42 109 147 107 154 0.91 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_19 - 389 VirC1 PF07015.6 231 0.00012 14.9 0.0 2 2 0.00031 0.055 6.2 0.0 84 139 235 290 222 316 0.77 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_2 - 760 AAA_16 PF13191.1 185 3.1e-06 21.0 0.0 1 1 5.1e-07 4.6e-05 17.2 0.0 21 56 182 218 179 253 0.78 # 2281 # 4560 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 6_9 - 264 AAA_16 PF13191.1 185 0.0025 11.5 5.7 1 1 0.00019 0.017 8.8 5.7 22 46 30 54 18 249 0.64 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 2_19 - 389 CbiA PF01656.18 195 1.4e-36 119.5 0.0 1 1 1e-38 1.8e-36 119.0 0.0 2 194 110 339 109 340 0.80 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 4_7 - 562 HI0933_like PF03486.9 409 7.7e-09 28.1 5.0 1 2 4.3e-07 7.6e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 HI0933_like PF03486.9 409 7.7e-09 28.1 5.0 2 2 1.7e-06 0.0003 13.0 0.0 83 163 286 362 281 379 0.85 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_9 - 264 AAA_29 PF13555.1 62 0.00087 12.6 0.0 1 1 1.2e-05 0.0021 11.4 0.0 17 46 27 55 20 66 0.76 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_7 - 562 FAD_binding_2 PF00890.19 417 1.7e-06 20.8 5.3 1 3 9.5e-09 1.7e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 FAD_binding_2 PF00890.19 417 1.7e-06 20.8 5.3 2 3 0.034 6 -0.8 0.2 142 204 311 366 286 382 0.67 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 FAD_binding_2 PF00890.19 417 1.7e-06 20.8 5.3 3 3 0.0019 0.33 3.4 0.1 373 402 374 405 368 419 0.86 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_9 - 264 AAA PF00004.24 132 0.0019 12.2 0.2 1 3 0.0011 0.19 5.6 0.0 3 21 37 55 35 100 0.71 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA PF00004.24 132 0.0019 12.2 0.2 2 3 0.0089 1.6 2.7 0.0 48 66 150 169 134 213 0.73 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA PF00004.24 132 0.0019 12.2 0.2 3 3 0.057 10 0.1 0.0 55 74 216 235 191 241 0.74 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_7 - 562 Thi4 PF01946.12 230 0.00048 13.0 0.4 1 1 6.3e-06 0.0011 11.7 0.4 19 70 100 150 95 158 0.88 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox_3 PF13738.1 203 2.6e-18 60.5 0.1 1 3 1.5e-06 0.00026 14.8 0.0 164 199 95 130 48 134 0.85 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox_3 PF13738.1 203 2.6e-18 60.5 0.1 2 3 5.8e-09 1e-06 22.6 0.0 115 201 219 304 174 306 0.81 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox_3 PF13738.1 203 2.6e-18 60.5 0.1 3 3 5.6e-08 1e-05 19.4 0.0 89 147 317 372 309 431 0.82 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_34 - 278 N6_Mtase PF02384.11 311 6.5e-12 38.8 0.0 1 1 5.2e-14 9.3e-12 38.3 0.0 25 117 139 237 133 265 0.85 # 29156 # 29989 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_2 - 760 TraG-D_C PF12696.2 128 1.1e-19 64.3 0.0 1 1 1.5e-21 2.7e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 2281 # 4560 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 2_19 - 389 AAA_31 PF13614.1 157 1.7e-09 31.5 0.0 1 2 1.4e-08 2.5e-06 21.2 0.0 2 49 108 155 107 195 0.92 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 2_19 - 389 AAA_31 PF13614.1 157 1.7e-09 31.5 0.0 2 2 0.00018 0.032 7.9 0.1 110 152 227 268 223 272 0.84 # 15347 # 16513 # 1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_34 - 278 Methyltransf_26 PF13659.1 117 4.5e-05 17.2 0.1 1 1 5.7e-07 0.0001 16.1 0.1 3 69 171 242 170 271 0.83 # 29156 # 29989 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 6_6 - 585 Bac_GDH PF05088.7 1528 0.001 10.2 0.1 1 2 2e-05 0.0036 8.4 0.1 416 468 245 296 228 323 0.87 # 4888 # 6642 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.337 6_6 - 585 Bac_GDH PF05088.7 1528 0.001 10.2 0.1 2 2 0.015 2.7 -1.1 0.0 500 537 539 575 531 580 0.89 # 4888 # 6642 # -1 # ID=6_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.337 4_7 - 562 XdhC_C PF13478.1 136 0.0015 12.6 1.0 1 2 0.08 14 -0.3 0.1 1 29 101 129 101 163 0.86 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 XdhC_C PF13478.1 136 0.0015 12.6 1.0 2 2 6.9e-05 0.012 9.6 0.1 1 66 273 351 273 371 0.64 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 7_1 - 989 AAA_30 PF13604.1 196 2e-42 138.7 0.8 1 1 1.1e-44 2e-42 138.7 0.8 2 186 206 393 205 397 0.94 # 1 # 2967 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.638 1_18 - 880 FtsK_SpoIIIE PF01580.13 205 0.00022 14.4 0.0 1 1 2.7e-06 0.00048 13.3 0.0 39 63 480 506 466 508 0.85 # 16777 # 19416 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 6_9 - 264 ABC_tran PF00005.22 137 6.8e-32 104.4 0.0 1 1 5.6e-34 1e-31 103.8 0.0 3 137 24 172 22 172 0.88 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_7 - 562 K_oxygenase PF13434.1 341 6e-06 19.0 0.2 1 3 0.0041 0.73 2.3 0.2 187 223 95 129 86 132 0.74 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 K_oxygenase PF13434.1 341 6e-06 19.0 0.2 2 3 2.9e-06 0.00051 12.7 0.0 130 231 217 309 200 339 0.79 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 K_oxygenase PF13434.1 341 6e-06 19.0 0.2 3 3 0.022 3.8 -0.0 0.0 139 160 345 366 314 376 0.63 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 7_1 - 989 AAA_19 PF13245.1 76 4.1e-07 23.5 0.3 1 1 1.5e-08 1.3e-06 21.8 0.3 5 75 216 283 211 284 0.73 # 1 # 2967 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.638 6_9 - 264 AAA_19 PF13245.1 76 0.002 11.6 0.1 1 1 2.3e-05 0.002 11.6 0.1 11 36 33 60 26 92 0.70 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_18 - 880 AAA_10 PF12846.2 304 3.4e-46 151.7 0.0 1 1 8.9e-48 5.3e-46 151.1 0.0 1 294 481 773 481 779 0.87 # 16777 # 19416 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 1_2 - 760 AAA_10 PF12846.2 304 3.6e-09 30.1 0.0 1 2 1.8e-05 0.0011 12.2 0.0 3 43 187 227 186 239 0.93 # 2281 # 4560 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 1_2 - 760 AAA_10 PF12846.2 304 3.6e-09 30.1 0.0 2 2 2.4e-06 0.00014 15.0 0.0 203 296 400 494 384 499 0.82 # 2281 # 4560 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 6_9 - 264 AAA_10 PF12846.2 304 5.8e-06 19.6 0.2 1 2 3.1e-05 0.0019 11.4 0.3 6 36 37 69 34 103 0.87 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA_10 PF12846.2 304 5.8e-06 19.6 0.2 2 2 0.0013 0.079 6.0 0.0 215 267 156 208 140 236 0.79 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 2_5 - 191 NodS PF05401.6 201 0.0014 11.8 0.0 1 2 0.049 8.7 -0.6 0.0 42 154 34 59 19 69 0.63 # 1431 # 2003 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 2_5 - 191 NodS PF05401.6 201 0.0014 11.8 0.0 2 2 2.8e-05 0.005 9.9 0.0 25 70 99 144 87 172 0.84 # 1431 # 2003 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 4_7 - 562 FAD_oxidored PF12831.2 428 1.1e-06 21.7 3.8 1 2 5.9e-09 1.1e-06 21.7 3.8 1 41 100 139 100 159 0.83 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 FAD_oxidored PF12831.2 428 1.1e-06 21.7 3.8 2 2 0.01 1.8 1.2 0.0 84 120 305 341 261 364 0.71 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_17 - 144 DNA_photolyase PF00875.13 165 0.00029 14.3 0.0 1 1 1.9e-06 0.00033 14.1 0.0 16 94 20 112 17 140 0.70 # 12749 # 13180 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.477 4_7 - 562 DAO PF01266.19 358 1.2e-11 37.8 7.5 1 2 1.9e-08 3.3e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 DAO PF01266.19 358 1.2e-11 37.8 7.5 2 2 7.7e-09 1.4e-06 21.1 0.5 151 239 314 400 274 529 0.80 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox PF00070.22 80 1.7e-19 63.8 5.4 1 2 1.2e-06 0.00022 15.4 1.5 2 31 101 130 100 132 0.95 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 Pyr_redox PF00070.22 80 1.7e-19 63.8 5.4 2 2 3.2e-17 5.6e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_2 - 760 TrwB_AAD_bind PF10412.4 386 7.6e-148 485.9 0.0 1 1 1.1e-149 9.9e-148 485.5 0.0 2 386 172 561 171 561 0.99 # 2281 # 4560 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 1_18 - 880 TrwB_AAD_bind PF10412.4 386 2.5e-05 16.7 0.1 1 1 7.5e-07 6.7e-05 15.3 0.0 16 94 482 556 474 569 0.72 # 16777 # 19416 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 7_1 - 989 AAA_11 PF13086.1 236 2.5e-06 20.9 1.4 1 2 3.8e-06 0.00067 13.0 0.0 2 75 206 276 205 296 0.78 # 1 # 2967 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.638 7_1 - 989 AAA_11 PF13086.1 236 2.5e-06 20.9 1.4 2 2 0.00043 0.077 6.2 0.1 194 231 302 342 278 344 0.73 # 1 # 2967 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.638 1_2 - 760 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.8 0.0 1 2 0.058 10 -1.8 0.0 129 199 261 330 252 360 0.71 # 2281 # 4560 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 1_2 - 760 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.8 0.0 2 2 3.2e-10 5.7e-08 25.4 0.0 274 394 392 508 361 560 0.74 # 2281 # 4560 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 1_18 - 880 Pox_A32 PF04665.7 241 0.00012 15.1 0.0 1 1 1.5e-06 0.00027 14.0 0.0 6 40 474 508 470 523 0.82 # 16777 # 19416 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.555 4_7 - 562 AlaDh_PNT_C PF01262.16 168 1.5e-06 21.6 2.3 1 2 3.9e-06 0.0007 12.9 0.3 16 50 94 128 80 131 0.87 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_7 - 562 AlaDh_PNT_C PF01262.16 168 1.5e-06 21.6 2.3 2 2 0.00012 0.021 8.1 0.1 19 60 269 310 260 341 0.84 # 2975 # 4660 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 6_9 - 264 NACHT PF05729.7 166 0.0015 11.9 0.8 1 2 6.4e-05 0.011 9.0 0.2 3 21 35 53 33 64 0.88 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 NACHT PF05729.7 166 0.0015 11.9 0.8 2 2 0.018 3.2 1.1 0.0 76 98 214 236 176 248 0.67 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA_25 PF13481.1 194 0.00043 13.4 1.7 1 3 2.3e-05 0.0041 10.2 0.0 31 54 30 53 21 110 0.91 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA_25 PF13481.1 194 0.00043 13.4 1.7 2 3 0.044 7.8 -0.5 0.0 172 188 186 202 161 204 0.81 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 6_9 - 264 AAA_25 PF13481.1 194 0.00043 13.4 1.7 3 3 0.012 2.1 1.4 0.4 125 156 206 233 178 237 0.54 # 9189 # 9980 # 1 # ID=6_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8baab602-431d-469d-abad-7cb9287404d9 # Target file: checkm_output/bins/pm1299/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1299/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8baab602-431d-469d-abad-7cb9287404d9 checkm_output/bins/pm1299/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:22 2020 # [ok]