# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_27 - 188 Methyltransf_12 PF08242.7 99 0.0002 15.9 0.0 1 2 1.6e-05 0.0035 11.9 0.0 1 98 55 143 55 144 0.83 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_27 - 188 Methyltransf_12 PF08242.7 99 0.0002 15.9 0.0 2 2 0.027 5.9 1.5 0.0 16 34 166 184 155 187 0.73 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_36 - 227 UPF0020 PF01170.13 180 2.7e-05 17.8 0.0 1 2 0.00088 0.064 6.8 0.0 104 118 18 32 7 84 0.78 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_36 - 227 UPF0020 PF01170.13 180 2.7e-05 17.8 0.0 2 2 0.00017 0.013 9.1 0.0 28 54 163 189 158 218 0.70 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_26 - 234 UPF0020 PF01170.13 180 0.00024 14.7 0.0 1 2 0.0001 0.0076 9.8 0.0 103 123 17 37 5 85 0.75 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_26 - 234 UPF0020 PF01170.13 180 0.00024 14.7 0.0 2 2 0.014 1 2.9 0.0 28 44 170 186 165 226 0.79 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 2_27 - 188 UPF0020 PF01170.13 180 0.0012 12.5 0.0 1 2 0.0001 0.0075 9.8 0.0 16 43 38 65 35 85 0.93 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_27 - 188 UPF0020 PF01170.13 180 0.0012 12.5 0.0 2 2 0.093 6.8 0.2 0.0 97 117 104 123 96 133 0.79 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_27 - 188 RrnaAD PF00398.15 262 4.6e-06 19.8 0.0 1 1 2.6e-08 5.8e-06 19.5 0.0 8 109 28 124 22 139 0.86 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 8_1 - 194 CoA_binding_2 PF13380.1 116 0.00047 14.4 0.0 1 1 4.6e-06 0.001 13.3 0.0 65 108 70 115 67 119 0.92 # 867 # 1448 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 1_34 - 289 MipZ PF09140.6 261 1.7e-09 31.1 0.0 1 2 3e-06 0.00033 13.8 0.0 2 39 11 48 10 62 0.92 # 23792 # 24658 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 1_34 - 289 MipZ PF09140.6 261 1.7e-09 31.1 0.0 2 2 1e-06 0.00011 15.3 0.0 61 127 95 162 88 165 0.82 # 23792 # 24658 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 2_45 - 402 MipZ PF09140.6 261 4.1e-06 20.0 0.0 1 2 0.0053 0.59 3.1 0.0 3 50 111 163 109 193 0.73 # 28045 # 29250 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_45 - 402 MipZ PF09140.6 261 4.1e-06 20.0 0.0 2 2 1.7e-06 0.00019 14.6 0.0 87 136 233 282 220 296 0.87 # 28045 # 29250 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 7_5 - 336 3HCDH_N PF02737.13 180 0.012 9.2 6.3 1 2 0.0067 1.5 2.5 3.3 1 30 100 129 100 134 0.93 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 3HCDH_N PF02737.13 180 0.012 9.2 6.3 2 2 0.00025 0.054 7.1 0.0 2 33 273 304 272 333 0.85 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 GIDA PF01134.17 392 8.6e-07 22.1 5.5 1 1 9.7e-09 2.1e-06 20.8 5.3 1 53 100 154 100 290 0.84 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 2_24 - 183 SSB PF00436.20 104 3.9e-41 133.2 0.2 1 1 4.3e-43 4.8e-41 132.9 0.2 1 99 6 105 6 113 0.95 # 14222 # 14770 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.619 1_14 - 186 SSB PF00436.20 104 8.1e-41 132.2 0.2 1 1 9.1e-43 1e-40 131.9 0.2 1 99 6 105 6 113 0.95 # 9313 # 9870 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.625 2_27 - 188 Methyltransf_18 PF12847.2 112 7.7e-05 17.3 0.0 1 1 5.4e-07 0.00012 16.7 0.0 3 107 52 144 50 149 0.87 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_48 - 341 UvrD_C_2 PF13538.1 104 2.4e-06 21.7 0.0 1 1 2.3e-08 5.2e-06 20.6 0.0 33 104 243 330 222 330 0.75 # 35861 # 36883 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.551 7_5 - 336 Pyr_redox_2 PF07992.9 201 1e-28 94.6 0.0 1 1 2.1e-30 1.5e-28 94.0 0.0 1 184 100 332 100 335 0.85 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 5_1 - 229 Pyr_redox_2 PF07992.9 201 3.8e-14 47.0 0.3 1 2 0.00078 0.058 7.3 0.0 102 124 12 34 3 37 0.80 # 2 # 688 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.648 5_1 - 229 Pyr_redox_2 PF07992.9 201 3.8e-14 47.0 0.3 2 2 3.7e-13 2.7e-11 37.7 0.0 160 199 34 74 34 76 0.92 # 2 # 688 # 1 # ID=5_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.648 5_23 - 225 Pyr_redox_2 PF07992.9 201 1.4e-13 45.2 0.3 1 2 0.0014 0.1 6.5 0.0 104 124 10 30 3 34 0.83 # 22080 # 22754 # -1 # ID=5_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 5_23 - 225 Pyr_redox_2 PF07992.9 201 1.4e-13 45.2 0.3 2 2 6.3e-13 4.6e-11 36.9 0.1 160 199 30 70 30 72 0.93 # 22080 # 22754 # -1 # ID=5_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 4_26 - 731 DUF87 PF01935.12 229 1.1e-05 19.4 0.0 1 2 0.097 21 -1.2 0.2 115 170 165 212 155 246 0.57 # 23369 # 25561 # -1 # ID=4_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.548 4_26 - 731 DUF87 PF01935.12 229 1.1e-05 19.4 0.0 2 2 2.3e-07 5e-05 17.2 0.0 26 222 335 525 332 532 0.79 # 23369 # 25561 # -1 # ID=4_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.548 5_6 - 331 AAA_22 PF13401.1 131 1.1e-16 55.2 0.0 1 1 1.9e-18 2.1e-16 54.3 0.0 7 126 64 190 59 194 0.94 # 3762 # 4754 # 1 # ID=5_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 1_48 - 341 AAA_22 PF13401.1 131 0.00016 15.8 0.0 1 1 7.2e-06 0.00079 13.6 0.0 8 111 5 155 4 167 0.77 # 35861 # 36883 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.551 7_5 - 336 DFP PF04127.10 185 0.0051 10.4 2.4 1 2 0.00024 0.053 7.1 0.5 28 51 106 129 103 155 0.83 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 DFP PF04127.10 185 0.0051 10.4 2.4 2 2 0.0059 1.3 2.6 0.1 32 53 282 303 277 333 0.78 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 Trp_halogenase PF04820.9 454 0.0047 9.5 3.3 1 1 4.1e-05 0.009 8.6 3.3 1 47 100 143 100 151 0.76 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 1_47 - 521 AAA_15 PF13175.1 415 1e-18 61.6 0.1 1 2 2.4e-10 5.2e-08 26.3 0.0 2 45 5 47 4 64 0.90 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 521 AAA_15 PF13175.1 415 1e-18 61.6 0.1 2 2 1.7e-12 3.7e-10 33.3 0.1 315 414 219 317 177 318 0.72 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 7_5 - 336 NAD_binding_7 PF13241.1 103 1.1e-05 19.7 1.8 1 2 1.4e-05 0.0031 11.8 0.7 9 38 100 129 96 159 0.90 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 NAD_binding_7 PF13241.1 103 1.1e-05 19.7 1.8 2 2 0.00068 0.15 6.4 0.0 8 40 271 303 264 332 0.81 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 2_36 - 227 N6_N4_Mtase PF01555.13 231 3.8e-37 122.0 0.0 1 1 1.9e-36 2.1e-34 113.0 0.0 1 227 21 199 21 204 0.92 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_26 - 234 N6_N4_Mtase PF01555.13 231 1.4e-31 103.8 0.0 1 2 2.7e-14 3e-12 40.5 0.0 1 113 21 130 21 140 0.87 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_26 - 234 N6_N4_Mtase PF01555.13 231 1.4e-31 103.8 0.0 2 2 1e-20 1.1e-18 61.5 0.0 171 227 150 206 138 210 0.93 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_47 - 521 AAA_21 PF13304.1 303 2.1e-14 48.1 0.0 1 2 7e-07 0.00015 15.8 0.0 2 24 27 49 27 78 0.83 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 521 AAA_21 PF13304.1 303 2.1e-14 48.1 0.0 2 2 3.3e-11 7.3e-09 30.0 0.1 258 301 274 317 222 319 0.86 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 7_5 - 336 NAD_binding_8 PF13450.1 68 7.2e-05 16.8 1.1 1 1 3.3e-07 7.2e-05 16.8 1.1 1 35 103 136 103 156 0.90 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 1_47 - 521 SMC_N PF02463.14 220 2.2e-11 37.4 0.0 1 2 1.4e-11 3.1e-09 30.4 0.0 2 70 4 68 3 79 0.85 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 521 SMC_N PF02463.14 220 2.2e-11 37.4 0.0 2 2 0.00084 0.19 4.9 0.0 160 204 277 320 203 329 0.85 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 4_8 - 708 AAA_16 PF13191.1 185 6.6e-06 20.2 0.0 1 1 2.5e-07 2.8e-05 18.2 0.0 20 56 181 218 179 254 0.78 # 7476 # 9599 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 5_6 - 331 AAA_16 PF13191.1 185 4.5e-05 17.5 0.0 1 1 5.9e-06 0.00065 13.7 0.0 8 103 45 145 43 186 0.62 # 3762 # 4754 # 1 # ID=5_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 1_47 - 521 AAA_23 PF13476.1 202 5.1e-11 37.3 0.0 1 1 1.8e-12 2e-10 35.3 0.0 1 53 6 58 6 144 0.88 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_55 - 462 AAA_23 PF13476.1 202 0.015 9.6 4.4 1 2 0.00068 0.075 7.3 1.3 106 198 122 233 65 244 0.68 # 42035 # 43420 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 1_55 - 462 AAA_23 PF13476.1 202 0.015 9.6 4.4 2 2 0.011 1.2 3.4 0.1 144 191 349 403 303 437 0.61 # 42035 # 43420 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.504 2_45 - 402 CbiA PF01656.18 195 2.8e-18 60.0 0.0 1 1 5.6e-20 6.2e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 28045 # 29250 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_34 - 289 CbiA PF01656.18 195 1e-17 58.2 0.0 1 1 1.2e-19 1.4e-17 57.8 0.0 1 160 12 203 12 229 0.82 # 23792 # 24658 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 7_5 - 336 HI0933_like PF03486.9 409 2.9e-05 16.7 2.8 1 1 2.2e-07 4.9e-05 15.9 2.8 2 33 100 131 99 139 0.91 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 1_47 - 521 AAA_29 PF13555.1 62 3.3e-07 23.8 0.0 1 1 2.9e-09 6.4e-07 22.9 0.0 2 49 5 50 4 57 0.81 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 7_5 - 336 FAD_binding_2 PF00890.19 417 6.6e-07 22.4 5.3 1 1 5e-09 1.1e-06 21.7 5.3 2 32 101 131 100 138 0.91 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 Thi4 PF01946.12 230 0.00039 13.6 0.4 1 1 3.1e-06 0.00068 12.8 0.4 19 70 100 150 95 158 0.88 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 Pyr_redox_3 PF13738.1 203 1.9e-12 41.7 0.0 1 2 1.4e-06 0.00015 15.8 0.0 164 199 95 130 45 133 0.84 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 Pyr_redox_3 PF13738.1 203 1.9e-12 41.7 0.0 2 2 4.6e-09 5e-07 24.0 0.0 115 201 219 304 173 306 0.80 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 5_23 - 225 Pyr_redox_3 PF13738.1 203 0.0012 12.9 0.0 1 1 1.6e-05 0.0017 12.4 0.0 112 147 3 35 1 100 0.76 # 22080 # 22754 # -1 # ID=5_23;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 5_6 - 331 TniB PF05621.6 302 4.7e-201 659.8 5.7 1 1 2.6e-203 5.7e-201 659.6 5.7 1 287 1 287 1 300 0.98 # 3762 # 4754 # 1 # ID=5_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 1_5 - 278 N6_Mtase PF02384.11 311 3.5e-11 36.7 0.0 1 1 5.2e-13 5.7e-11 36.0 0.0 25 117 139 237 130 265 0.85 # 2646 # 3479 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 2_27 - 188 N6_Mtase PF02384.11 311 0.0013 11.8 0.0 1 2 0.0008 0.088 5.8 0.0 28 63 32 67 23 82 0.87 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_27 - 188 N6_Mtase PF02384.11 311 0.0013 11.8 0.0 2 2 0.0028 0.31 4.0 0.0 123 138 110 125 99 151 0.82 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 4_8 - 708 TraG-D_C PF12696.2 128 1.3e-19 64.4 0.0 1 1 1.4e-21 3e-19 63.2 0.0 1 127 419 541 419 542 0.88 # 7476 # 9599 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_34 - 289 AAA_31 PF13614.1 157 2.4e-06 21.6 0.0 1 1 2e-07 2.2e-05 18.5 0.0 1 135 10 151 10 171 0.79 # 23792 # 24658 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.419 2_45 - 402 AAA_31 PF13614.1 157 0.00021 15.3 0.0 1 1 1.1e-05 0.0012 12.8 0.0 108 147 235 273 230 279 0.86 # 28045 # 29250 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_36 - 227 Methyltransf_26 PF13659.1 117 1e-11 38.9 0.1 1 2 6.1e-07 3.4e-05 17.9 0.0 66 114 16 71 3 74 0.76 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_36 - 227 Methyltransf_26 PF13659.1 117 1e-11 38.9 0.1 2 2 2.7e-07 1.5e-05 19.0 0.0 4 34 167 196 164 221 0.79 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_27 - 188 Methyltransf_26 PF13659.1 117 5.5e-11 36.6 0.1 1 1 1.7e-12 9.5e-11 35.8 0.1 2 114 52 147 51 150 0.89 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_26 - 234 Methyltransf_26 PF13659.1 117 4e-10 33.8 0.2 1 2 3.5e-07 1.9e-05 18.7 0.0 63 114 13 71 3 74 0.73 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_26 - 234 Methyltransf_26 PF13659.1 117 4e-10 33.8 0.2 2 2 2e-05 0.0011 13.0 0.1 4 44 174 213 171 227 0.80 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_5 - 278 Methyltransf_26 PF13659.1 117 9.6e-05 16.4 0.1 1 1 5.6e-06 0.00031 14.8 0.1 3 68 171 241 170 271 0.83 # 2646 # 3479 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_37 - 585 Bac_GDH PF05088.7 1528 0.0024 9.3 0.1 1 2 2.1e-05 0.0047 8.3 0.0 416 468 245 296 225 340 0.88 # 25620 # 27374 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.337 1_37 - 585 Bac_GDH PF05088.7 1528 0.0024 9.3 0.1 2 2 0.063 14 -3.2 0.0 500 536 539 574 535 576 0.87 # 25620 # 27374 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.337 4_26 - 731 FtsK_SpoIIIE PF01580.13 205 0.0002 14.9 0.0 1 1 2.2e-06 0.00049 13.6 0.0 39 63 329 357 310 359 0.85 # 23369 # 25561 # -1 # ID=4_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.548 2_27 - 188 MTS PF05175.9 170 9.1e-09 28.9 0.0 1 1 5.9e-11 1.3e-08 28.4 0.0 27 151 46 159 32 170 0.84 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_47 - 521 DUF2813 PF11398.3 373 7.5e-05 15.9 3.2 1 2 5.9e-06 0.0013 11.8 0.0 12 49 13 51 3 56 0.79 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 521 DUF2813 PF11398.3 373 7.5e-05 15.9 3.2 2 2 0.0012 0.26 4.3 0.2 280 333 271 325 258 330 0.80 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 521 ABC_tran PF00005.22 137 0.00064 14.1 0.0 1 1 9.1e-06 0.002 12.5 0.0 15 113 28 155 18 161 0.71 # 34314 # 35876 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 7_5 - 336 K_oxygenase PF13434.1 341 6.1e-06 19.3 0.1 1 2 0.002 0.45 3.3 0.1 187 223 95 129 84 132 0.75 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 K_oxygenase PF13434.1 341 6.1e-06 19.3 0.1 2 2 1.3e-06 0.00028 13.9 0.0 130 231 217 309 196 332 0.80 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 2_36 - 227 Cons_hypoth95 PF03602.10 183 3.1e-05 17.5 0.0 1 2 0.00059 0.065 6.6 0.0 113 166 19 74 15 82 0.65 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_36 - 227 Cons_hypoth95 PF03602.10 183 3.1e-05 17.5 0.0 2 2 0.00012 0.013 8.9 0.0 41 61 162 182 145 207 0.83 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_26 - 234 Cons_hypoth95 PF03602.10 183 0.00026 14.4 0.0 1 2 0.0006 0.066 6.6 0.0 113 167 19 75 12 84 0.64 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_26 - 234 Cons_hypoth95 PF03602.10 183 0.00026 14.4 0.0 2 2 0.001 0.11 5.8 0.0 41 60 169 188 157 225 0.74 # 17251 # 17952 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 7_5 - 336 NAD_binding_10 PF13460.1 183 0.054 7.5 6.7 1 2 0.00027 0.059 7.4 2.3 1 31 101 130 101 135 0.92 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 NAD_binding_10 PF13460.1 183 0.054 7.5 6.7 2 2 0.014 3.2 1.7 0.1 2 32 274 303 273 327 0.89 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 4_26 - 731 AAA_10 PF12846.2 304 3.1e-45 148.9 0.0 1 1 4.3e-47 4.7e-45 148.3 0.0 1 294 332 624 332 630 0.86 # 23369 # 25561 # -1 # ID=4_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.548 4_8 - 708 AAA_10 PF12846.2 304 3.8e-09 30.4 0.0 1 1 1.5e-08 1.6e-06 21.7 0.0 3 296 187 494 186 499 0.62 # 7476 # 9599 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 7_5 - 336 FAD_oxidored PF12831.2 428 6.3e-07 22.7 5.5 1 2 3e-09 6.6e-07 22.7 3.8 1 41 100 139 100 159 0.83 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 FAD_oxidored PF12831.2 428 6.3e-07 22.7 5.5 2 2 0.051 11 -1.1 0.0 84 116 305 336 266 336 0.69 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 DAO PF01266.19 358 1.6e-06 21.2 1.2 1 2 7.4e-09 1.6e-06 21.2 1.2 2 35 101 134 100 162 0.85 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 DAO PF01266.19 358 1.6e-06 21.2 1.2 2 2 0.062 14 -1.6 0.1 151 170 314 333 277 336 0.77 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 1_48 - 341 Viral_helicase1 PF01443.13 234 8.3e-11 35.8 0.3 1 2 4.9e-07 0.00011 15.8 0.0 2 30 5 38 4 54 0.72 # 35861 # 36883 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_48 - 341 Viral_helicase1 PF01443.13 234 8.3e-11 35.8 0.3 2 2 2.1e-07 4.6e-05 17.0 0.5 63 233 133 330 125 331 0.66 # 35861 # 36883 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.551 7_5 - 336 Pyr_redox PF00070.22 80 5.2e-19 62.5 4.8 1 2 6.5e-07 0.00014 16.3 1.5 2 31 101 130 100 132 0.95 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 Pyr_redox PF00070.22 80 5.2e-19 62.5 4.8 2 2 1.6e-16 3.5e-14 47.0 0.1 1 65 272 335 272 336 0.96 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 4_8 - 708 TrwB_AAD_bind PF10412.4 386 3.4e-148 487.3 0.0 1 1 3.8e-150 4.2e-148 487.0 0.0 2 386 172 561 171 561 0.99 # 7476 # 9599 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 4_26 - 731 TrwB_AAD_bind PF10412.4 386 1.8e-05 17.5 0.0 1 1 4.4e-07 4.8e-05 16.1 0.0 16 96 333 409 325 420 0.76 # 23369 # 25561 # -1 # ID=4_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.548 4_8 - 708 T4SS-DNA_transf PF02534.9 469 3.3e-08 26.5 0.0 1 1 3e-10 6.6e-08 25.5 0.0 278 394 396 508 364 560 0.74 # 7476 # 9599 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 5_6 - 331 AAA_32 PF13654.1 509 0.00021 14.0 0.0 1 2 8.6e-06 0.0019 10.9 0.0 8 81 34 112 26 124 0.86 # 3762 # 4754 # 1 # ID=5_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 5_6 - 331 AAA_32 PF13654.1 509 0.00021 14.0 0.0 2 2 0.01 2.2 0.8 0.0 472 504 255 287 242 290 0.90 # 3762 # 4754 # 1 # ID=5_6;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.649 2_27 - 188 TIGR00755 TIGR00755 256 1.9e-07 24.3 0.0 1 1 1.1e-09 2.5e-07 23.9 0.0 8 108 29 126 23 134 0.90 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 2_36 - 227 MethyltransfD12 PF02086.10 260 0.00044 13.8 0.0 1 2 0.016 3.6 0.9 0.0 177 189 20 32 15 95 0.73 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 2_36 - 227 MethyltransfD12 PF02086.10 260 0.00044 13.8 0.0 2 2 1.6e-05 0.0036 10.8 0.0 20 47 163 190 148 214 0.80 # 21461 # 22141 # -1 # ID=2_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 4_26 - 731 Pox_A32 PF04665.7 241 0.00023 14.5 0.0 1 1 2.1e-06 0.00047 13.5 0.0 6 40 325 359 321 374 0.81 # 23369 # 25561 # -1 # ID=4_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.548 2_27 - 188 Methyltransf_23 PF13489.1 161 0.00019 15.2 0.0 1 1 9.9e-07 0.00022 15.0 0.0 14 116 43 149 5 175 0.75 # 15604 # 16167 # -1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.589 7_5 - 336 AlaDh_PNT_C PF01262.16 168 5.4e-07 23.3 2.1 1 2 2e-06 0.00044 13.9 0.3 16 50 94 128 80 131 0.87 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 7_5 - 336 AlaDh_PNT_C PF01262.16 168 5.4e-07 23.3 2.1 2 2 6.9e-05 0.015 8.9 0.1 19 58 269 308 260 324 0.85 # 1709 # 2716 # 1 # ID=7_5;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.654 1_48 - 341 UvrD-helicase PF00580.16 315 4.6e-08 26.7 0.0 1 2 1.2e-05 0.0027 11.0 0.0 16 67 4 47 2 86 0.80 # 35861 # 36883 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_48 - 341 UvrD-helicase PF00580.16 315 4.6e-08 26.7 0.0 2 2 1.9e-06 0.00043 13.6 0.0 242 294 115 170 91 174 0.86 # 35861 # 36883 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.551 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2cac66e5-da3f-43b7-8da5-31aca919d746 # Target file: checkm_output/bins/pm1298/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1298/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2cac66e5-da3f-43b7-8da5-31aca919d746 checkm_output/bins/pm1298/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:21 2020 # [ok]