# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_76 - 336 3HCDH_N PF02737.13 180 0.0069 9.1 6.3 1 2 0.0067 0.76 2.5 3.3 1 30 100 129 100 134 0.93 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 3HCDH_N PF02737.13 180 0.0069 9.1 6.3 2 2 0.00026 0.03 7.0 0.0 2 32 273 303 272 328 0.86 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 GIDA PF01134.17 392 4.5e-07 22.1 5.5 1 1 9.7e-09 1.1e-06 20.8 5.3 1 53 100 154 100 290 0.84 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_17 - 145 SSB PF00436.20 104 8.3e-32 102.3 0.2 1 1 8.4e-34 9.6e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 12503 # 12937 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_76 - 336 Pyr_redox_2 PF07992.9 201 1.2e-28 93.4 0.0 1 1 1.5e-30 1.7e-28 93.0 0.0 1 160 100 302 100 333 0.86 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_8 - 388 DUF87 PF01935.12 229 0.00011 15.2 0.0 1 1 1.8e-06 0.00021 14.2 0.0 28 45 157 174 155 188 0.89 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 AAA_22 PF13401.1 131 4.8e-06 19.9 0.0 1 1 1.9e-07 1.1e-05 18.7 0.0 4 30 152 178 149 243 0.84 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 2_7 - 1017 AAA_22 PF13401.1 131 0.00043 13.5 0.0 1 1 2.4e-05 0.0013 11.9 0.0 8 69 492 557 486 594 0.67 # 4582 # 7632 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_8 - 388 ATP_bind_1 PF03029.12 238 0.00093 11.8 0.0 1 1 1.3e-05 0.0015 11.2 0.0 1 25 157 181 157 191 0.84 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_76 - 336 DFP PF04127.10 185 0.0021 10.8 2.3 1 2 0.00024 0.028 7.1 0.5 28 51 106 129 103 155 0.83 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 DFP PF04127.10 185 0.0021 10.8 2.3 2 2 0.0051 0.58 2.8 0.1 32 53 282 303 277 334 0.74 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 Trp_halogenase PF04820.9 454 0.0025 9.5 3.3 1 1 4.1e-05 0.0047 8.6 3.3 1 47 100 143 100 151 0.76 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 NAD_binding_7 PF13241.1 103 6.1e-06 19.6 1.9 1 2 1.4e-05 0.0016 11.8 0.7 9 38 100 129 96 159 0.90 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 NAD_binding_7 PF13241.1 103 6.1e-06 19.6 1.9 2 2 0.00071 0.081 6.3 0.0 8 40 271 303 264 330 0.82 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_7 - 1017 AAA_17 PF13207.1 121 5.2e-05 17.2 0.0 1 1 2.9e-06 0.00033 14.6 0.0 3 28 492 523 492 587 0.67 # 4582 # 7632 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_8 - 388 Miro PF08477.8 119 0.0011 12.6 0.0 1 1 2.1e-05 0.0024 11.5 0.0 4 28 157 186 156 220 0.72 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 MobB PF03205.9 140 0.0006 12.6 0.0 1 1 1e-05 0.0012 11.7 0.0 4 25 156 177 154 190 0.85 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 T2SE PF00437.15 272 2.5e-23 75.4 0.0 1 1 3.4e-25 3.8e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_76 - 336 NAD_binding_8 PF13450.1 68 3.7e-05 16.8 1.1 1 1 3.3e-07 3.7e-05 16.8 1.1 1 35 103 136 103 156 0.90 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_8 - 388 SMC_N PF02463.14 220 0.0012 11.2 0.0 1 1 1.8e-05 0.002 10.4 0.0 25 50 153 178 146 195 0.81 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 AAA_16 PF13191.1 185 0.00073 12.6 0.0 1 1 1.2e-05 0.0014 11.7 0.0 25 50 153 178 141 211 0.84 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 AAA_23 PF13476.1 202 2.7e-06 20.9 0.8 1 1 3.9e-08 4.4e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 2_7 - 1017 AAA_18 PF13238.1 129 6.2e-05 16.4 0.1 1 1 4.2e-06 0.00047 13.6 0.0 2 19 492 509 492 562 0.79 # 4582 # 7632 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_8 - 388 KaiC PF06745.8 227 0.00088 11.5 0.0 1 1 1.4e-05 0.0015 10.7 0.0 11 59 144 191 137 201 0.76 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_76 - 336 HI0933_like PF03486.9 409 1.5e-05 16.6 2.8 1 1 2.2e-07 2.5e-05 15.9 2.8 2 33 100 131 99 139 0.91 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_8 - 388 AAA_29 PF13555.1 62 9.7e-06 18.2 0.1 1 1 2e-07 2.3e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_76 - 336 FAD_binding_2 PF00890.19 417 3.5e-07 22.4 5.3 1 1 5e-09 5.7e-07 21.7 5.3 2 32 101 131 100 138 0.91 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 Thi4 PF01946.12 230 0.0002 13.6 0.4 1 1 3.1e-06 0.00035 12.8 0.4 19 70 100 150 95 158 0.88 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 Pyr_redox_3 PF13738.1 203 9.9e-13 41.7 0.0 1 2 7e-07 8e-05 15.8 0.0 164 199 95 130 45 133 0.84 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 Pyr_redox_3 PF13738.1 203 9.9e-13 41.7 0.0 2 2 2.3e-09 2.6e-07 24.0 0.0 115 201 219 304 173 306 0.80 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_8 - 388 Ribosomal_S5 PF00333.15 67 3.6e-05 16.6 0.1 1 2 0.00093 0.11 5.5 0.0 26 45 84 103 77 114 0.83 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 Ribosomal_S5 PF00333.15 67 3.6e-05 16.6 0.1 2 2 0.00012 0.013 8.4 0.0 21 54 242 274 230 278 0.91 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_64 - 696 TraG-D_C PF12696.2 128 0.00016 14.7 0.1 1 1 2.4e-06 0.00027 13.9 0.1 3 94 437 524 435 556 0.78 # 38460 # 40547 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_8 - 388 FtsK_SpoIIIE PF01580.13 205 0.00012 14.7 0.0 1 1 2.1e-06 0.00024 13.7 0.0 41 59 155 173 135 184 0.85 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 ABC_tran PF00005.22 137 0.00013 15.4 0.0 1 1 2.2e-06 0.00025 14.5 0.0 15 33 156 174 147 217 0.82 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_76 - 336 K_oxygenase PF13434.1 341 3.3e-06 19.2 0.1 1 2 0.002 0.23 3.3 0.1 187 223 95 129 84 132 0.75 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 K_oxygenase PF13434.1 341 3.3e-06 19.2 0.1 2 2 1.4e-06 0.00015 13.8 0.0 130 231 217 309 196 327 0.80 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_7 - 1017 AAA_19 PF13245.1 76 0.00042 13.2 0.0 1 1 1.2e-05 0.0013 11.6 0.0 14 32 492 509 481 523 0.86 # 4582 # 7632 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_76 - 336 NAD_binding_10 PF13460.1 183 0.028 7.5 6.7 1 2 0.00027 0.03 7.4 2.3 1 31 101 130 101 135 0.92 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 NAD_binding_10 PF13460.1 183 0.028 7.5 6.7 2 2 0.014 1.6 1.7 0.1 2 32 274 303 273 327 0.89 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_7 - 1017 AAA_10 PF12846.2 304 8.6e-42 136.6 0.0 1 1 4.6e-43 1.8e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 4582 # 7632 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_64 - 696 AAA_10 PF12846.2 304 7.2e-10 31.8 0.0 1 1 2.8e-11 1.1e-09 31.2 0.0 2 292 134 503 133 514 0.76 # 38460 # 40547 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_8 - 388 AAA_10 PF12846.2 304 1.4e-06 21.0 0.0 1 1 2.1e-07 8e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_76 - 336 FAD_oxidored PF12831.2 428 2.2e-07 23.3 3.8 1 1 3e-09 3.4e-07 22.7 3.8 1 41 100 139 100 159 0.83 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 DAO PF01266.19 358 8.4e-07 21.2 1.2 1 1 7.4e-09 8.4e-07 21.2 1.2 2 35 101 134 100 162 0.85 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 2_7 - 1017 DUF2075 PF09848.4 352 0.00042 12.4 0.0 1 1 1e-05 0.0012 10.9 0.0 5 22 492 509 489 526 0.84 # 4582 # 7632 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_76 - 336 Pyr_redox PF00070.22 80 1.6e-18 60.1 4.4 1 2 6.5e-07 7.4e-05 16.3 1.5 2 31 101 130 100 132 0.95 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 Pyr_redox PF00070.22 80 1.6e-18 60.1 4.4 2 2 1.3e-15 1.5e-13 44.1 0.1 1 61 272 331 272 335 0.95 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_27 - 287 Methyltransf_27 PF13708.1 194 6.9e-69 224.3 0.0 1 1 1e-70 1.2e-68 223.6 0.0 2 194 89 282 88 282 0.98 # 16606 # 17466 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_64 - 696 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.6 0.9 1 3 1.7e-05 0.002 9.8 0.0 16 36 134 154 125 158 0.88 # 38460 # 40547 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_64 - 696 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.6 0.9 2 3 9.3e-05 0.011 7.4 0.1 93 140 235 281 229 303 0.80 # 38460 # 40547 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_64 - 696 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.6 0.9 3 3 0.083 9.4 -2.3 0.0 293 323 482 512 405 546 0.58 # 38460 # 40547 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_8 - 388 GTP_EFTU PF00009.22 188 0.0012 11.3 0.0 1 1 2e-05 0.0022 10.5 0.0 8 34 157 183 155 195 0.87 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 RNA_helicase PF00910.17 107 0.0013 12.1 0.0 1 1 2.5e-05 0.0028 10.9 0.0 3 26 157 180 156 197 0.81 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_76 - 336 AlaDh_PNT_C PF01262.16 168 2.6e-07 23.4 2.0 1 2 2e-06 0.00023 13.9 0.3 16 50 94 128 80 131 0.87 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_76 - 336 AlaDh_PNT_C PF01262.16 168 2.6e-07 23.4 2.0 2 2 7.2e-05 0.0082 8.8 0.1 19 58 269 308 260 322 0.85 # 50628 # 51635 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.650 1_8 - 388 NACHT PF05729.7 166 0.00039 13.2 0.0 1 1 6.6e-06 0.00075 12.3 0.0 4 29 156 181 154 188 0.83 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_8 - 388 AAA_25 PF13481.1 194 6.4e-06 18.8 0.0 1 1 1.1e-07 1.3e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 5577 # 6740 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b04b31e5-d7d8-43d6-804b-d84776a500e9 # Target file: checkm_output/bins/pm1293/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1293/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b04b31e5-d7d8-43d6-804b-d84776a500e9 checkm_output/bins/pm1293/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:19 2020 # [ok]