# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_125 - 556 RrnaAD PF00398.15 262 1.2e-05 17.8 0.0 1 1 1.5e-07 2.1e-05 17.0 0.0 12 92 399 474 392 511 0.85 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_71 - 428 Seryl_tRNA_N PF02403.17 108 0.041 7.4 7.3 1 3 0.035 4.9 0.7 0.1 69 104 147 182 142 189 0.57 # 55579 # 56862 # -1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_71 - 428 Seryl_tRNA_N PF02403.17 108 0.041 7.4 7.3 2 3 0.0044 0.63 3.5 0.5 30 64 174 208 153 220 0.62 # 55579 # 56862 # -1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_71 - 428 Seryl_tRNA_N PF02403.17 108 0.041 7.4 7.3 3 3 0.00051 0.072 6.6 4.6 22 106 190 272 181 274 0.78 # 55579 # 56862 # -1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_99 - 419 Terminase_6 PF03237.10 384 5e-17 55.0 0.0 1 1 4.5e-19 6.4e-17 54.7 0.0 4 382 31 403 28 405 0.86 # 89854 # 91110 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.526 1_28 - 346 IstB_IS21 PF01695.12 178 0.0012 11.7 0.0 1 1 1.7e-05 0.0025 10.7 0.0 52 82 54 84 49 99 0.83 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_64 - 222 MipZ PF09140.6 261 6.4e-16 51.5 0.1 1 1 7e-16 9.9e-14 44.4 0.1 2 150 5 134 4 148 0.82 # 50447 # 51112 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_5 - 217 CoaE PF01121.15 180 5.3e-05 16.1 0.1 1 1 7.4e-07 0.0001 15.1 0.1 2 31 2 32 1 36 0.93 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_104 - 214 AAA_22 PF13401.1 131 5.4e-06 20.0 0.1 1 1 5.5e-07 2.6e-05 17.8 0.1 5 92 50 182 44 193 0.60 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_38 - 413 AAA_22 PF13401.1 131 4.6e-05 17.0 0.0 1 1 2.1e-06 9.9e-05 15.9 0.0 7 65 170 220 165 257 0.89 # 30710 # 31948 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_5 - 217 AAA_22 PF13401.1 131 0.00035 14.1 0.0 1 1 1.2e-05 0.00056 13.5 0.0 9 28 5 24 3 76 0.86 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_104 - 214 PRK PF00485.13 194 0.0002 14.3 0.0 1 1 2.6e-06 0.00037 13.5 0.0 1 37 51 87 51 105 0.80 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 KAP_NTPase PF07693.9 325 5e-06 19.1 0.0 1 1 4.1e-08 5.8e-06 18.8 0.0 16 85 45 111 37 202 0.76 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_15 - 639 AAA_15 PF13175.1 415 0.00036 13.0 0.0 1 1 1.3e-05 0.00094 11.6 0.0 3 80 5 105 4 292 0.82 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_104 - 214 AAA_15 PF13175.1 415 0.00039 12.9 0.0 1 1 6.7e-06 0.00048 12.6 0.0 12 51 39 92 13 140 0.74 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_5 - 217 AAA_17 PF13207.1 121 2.5e-09 31.4 0.2 1 1 8e-11 3.8e-09 30.8 0.2 1 43 2 46 2 204 0.88 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_104 - 214 AAA_17 PF13207.1 121 7.4e-07 23.4 0.0 1 1 2.7e-08 1.3e-06 22.7 0.0 1 42 51 96 51 194 0.68 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_64 - 222 AAA_17 PF13207.1 121 0.00078 13.7 0.4 1 1 3.9e-05 0.0019 12.5 0.1 2 77 6 90 5 144 0.58 # 50447 # 51112 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_15 - 639 AAA_21 PF13304.1 303 1.4e-07 25.1 0.0 1 2 7.9e-05 0.0056 10.0 0.0 8 23 42 57 41 143 0.75 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 639 AAA_21 PF13304.1 303 1.4e-07 25.1 0.0 2 2 1.1e-05 0.00078 12.8 0.0 219 297 507 615 406 616 0.75 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_104 - 214 AAA_21 PF13304.1 303 0.001 12.4 0.0 1 2 0.00054 0.038 7.3 0.0 4 25 54 78 51 118 0.70 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 AAA_21 PF13304.1 303 0.001 12.4 0.0 2 2 0.0088 0.63 3.3 0.0 232 265 122 152 118 189 0.69 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 MobB PF03205.9 140 0.00012 15.2 0.4 1 1 2.2e-06 0.00031 13.9 0.1 2 36 51 85 50 103 0.88 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_107 - 526 Helicase_C PF00271.26 78 1.4e-11 37.5 0.0 1 1 2.1e-13 3e-11 36.5 0.0 2 77 394 469 393 470 0.97 # 95651 # 97228 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_99 - 419 PhoH PF02562.11 205 0.00047 12.8 0.0 1 2 9.4e-05 0.0067 9.0 0.0 109 137 109 135 26 141 0.67 # 89854 # 91110 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.526 1_99 - 419 PhoH PF02562.11 205 0.00047 12.8 0.0 2 2 0.033 2.3 0.7 0.0 67 93 353 379 341 397 0.77 # 89854 # 91110 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.526 1_28 - 346 PhoH PF02562.11 205 0.00075 12.2 0.0 1 1 5e-05 0.0035 9.9 0.0 21 49 51 79 46 105 0.90 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_5 - 217 SKI PF01202.17 158 0.0001 15.6 0.1 1 1 1.8e-06 0.00025 14.3 0.0 2 28 10 39 9 53 0.80 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_5 - 217 Cytidylate_kin2 PF13189.1 179 0.0012 12.2 0.0 1 1 1.5e-05 0.0022 11.3 0.0 6 36 7 37 3 71 0.86 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_104 - 214 Zeta_toxin PF06414.7 201 9e-05 15.0 0.1 1 2 3.5e-06 0.00049 12.6 0.0 17 51 50 84 38 89 0.80 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 Zeta_toxin PF06414.7 201 9e-05 15.0 0.1 2 2 0.024 3.4 0.1 0.0 81 110 164 193 132 210 0.64 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_15 - 639 SMC_N PF02463.14 220 8.2e-16 51.2 0.3 1 1 1.3e-16 9.4e-15 47.8 0.3 32 200 41 618 5 634 0.92 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_104 - 214 SMC_N PF02463.14 220 1.5e-06 20.9 0.3 1 2 0.00021 0.015 7.9 0.1 26 67 51 89 38 104 0.77 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 SMC_N PF02463.14 220 1.5e-06 20.9 0.3 2 2 1.3e-05 0.00091 11.9 0.0 136 213 126 201 89 208 0.69 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_64 - 222 VirC1 PF07015.6 231 6.1e-11 35.2 0.0 1 1 6.1e-13 8.7e-11 34.7 0.0 2 189 4 190 3 204 0.84 # 50447 # 51112 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_104 - 214 AAA_16 PF13191.1 185 5.7e-07 23.1 0.4 1 1 1e-08 1.4e-06 21.8 0.4 13 51 39 76 29 206 0.73 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_15 - 639 AAA_23 PF13476.1 202 2.2e-20 67.2 0.0 1 2 1.9e-19 2.6e-17 57.2 0.0 2 199 6 271 5 297 0.56 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 639 AAA_23 PF13476.1 202 2.2e-20 67.2 0.0 2 2 0.00094 0.13 5.9 1.7 108 177 407 476 329 505 0.62 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 217 AAA_18 PF13238.1 129 1.9e-06 21.6 0.0 1 1 4.3e-08 3e-06 21.0 0.0 1 42 3 49 3 71 0.82 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_104 - 214 AAA_18 PF13238.1 129 2e-05 18.3 0.0 1 1 5.2e-07 3.7e-05 17.5 0.0 1 37 52 88 52 206 0.82 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_15 - 639 AAA_13 PF13166.1 712 8e-05 14.6 0.9 1 3 0.011 0.75 1.5 0.0 24 49 41 66 41 93 0.74 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 639 AAA_13 PF13166.1 712 8e-05 14.6 0.9 2 3 0.0035 0.25 3.0 6.9 270 381 184 299 169 325 0.39 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 639 AAA_13 PF13166.1 712 8e-05 14.6 0.9 3 3 1.1e-06 8e-05 14.6 0.9 256 401 327 464 320 478 0.73 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_71 - 428 AAA_13 PF13166.1 712 0.00079 11.3 8.7 1 1 1.5e-05 0.001 10.9 8.7 334 468 153 284 129 307 0.79 # 55579 # 56862 # -1 # ID=1_71;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_64 - 222 CbiA PF01656.18 195 1.9e-16 53.4 0.1 1 1 4.5e-18 3.2e-16 52.7 0.0 1 161 6 150 6 187 0.80 # 50447 # 51112 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_104 - 214 CbiA PF01656.18 195 6.6e-05 15.8 0.4 1 1 1.4e-06 9.6e-05 15.2 0.4 2 34 52 84 51 184 0.76 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_28 - 346 KaiC PF06745.8 227 1.7e-05 17.4 0.0 1 1 2.3e-07 3.3e-05 16.5 0.0 7 54 33 83 13 102 0.77 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_28 - 346 AAA_14 PF13173.1 128 0.0012 12.2 0.0 1 2 0.021 3 1.2 0.0 68 78 18 28 8 31 0.92 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_28 - 346 AAA_14 PF13173.1 128 0.0012 12.2 0.0 2 2 0.00014 0.02 8.2 0.0 3 39 50 85 48 120 0.75 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_104 - 214 AAA_29 PF13555.1 62 5.2e-08 25.8 0.0 1 1 1.7e-09 1.2e-07 24.6 0.0 8 47 35 73 32 81 0.85 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_15 - 639 AAA_29 PF13555.1 62 2.4e-05 17.3 0.0 1 1 1e-06 7.1e-05 15.7 0.0 32 53 42 63 39 67 0.88 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 217 AAA PF00004.24 132 9.6e-07 22.5 0.0 1 1 2.3e-08 1.6e-06 21.7 0.0 3 46 5 49 3 65 0.86 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_38 - 413 AAA PF00004.24 132 0.00057 13.5 0.0 1 1 2.4e-05 0.0017 12.0 0.0 2 34 171 203 170 225 0.85 # 30710 # 31948 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_15 - 639 MMR_HSR1 PF01926.18 116 0.00047 13.5 1.8 1 1 2.6e-05 0.0037 10.6 0.4 10 88 44 193 41 316 0.64 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_125 - 556 N6_Mtase PF02384.11 311 0.001 11.6 0.1 1 2 0.00017 0.025 7.0 0.0 27 62 397 433 391 441 0.88 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_125 - 556 N6_Mtase PF02384.11 311 0.001 11.6 0.1 2 2 0.0089 1.3 1.4 0.1 123 145 475 497 455 511 0.74 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_104 - 214 DUF258 PF03193.11 161 0.00036 13.1 0.0 1 1 3.8e-06 0.00054 12.6 0.0 27 59 40 73 14 119 0.76 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_64 - 222 AAA_31 PF13614.1 157 1.1e-07 25.4 0.0 1 2 3.5e-06 0.00049 13.4 0.0 1 39 4 43 4 54 0.89 # 50447 # 51112 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_64 - 222 AAA_31 PF13614.1 157 1.1e-07 25.4 0.0 2 2 4.1e-05 0.0059 10.0 0.0 109 151 71 115 55 121 0.79 # 50447 # 51112 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_104 - 214 NTPase_1 PF03266.10 168 4.7e-05 16.6 0.2 1 1 2.1e-06 0.0003 13.9 0.2 2 140 52 193 51 212 0.71 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 AAA_33 PF13671.1 143 2.3e-05 17.7 0.2 1 1 1.2e-06 5.9e-05 16.4 0.2 1 95 51 203 51 211 0.63 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_5 - 217 AAA_33 PF13671.1 143 2.5e-05 17.6 0.0 1 1 6.6e-07 3.1e-05 17.3 0.0 4 30 5 31 3 118 0.83 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_38 - 413 AAA_33 PF13671.1 143 0.00055 13.2 0.0 1 1 2.3e-05 0.0011 12.3 0.0 4 76 172 240 171 245 0.80 # 30710 # 31948 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_104 - 214 KTI12 PF08433.5 270 3.6e-05 16.4 0.1 1 2 2.4e-06 0.00035 13.2 0.0 4 38 52 86 50 104 0.89 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 KTI12 PF08433.5 270 3.6e-05 16.4 0.1 2 2 0.013 1.8 1.0 0.0 191 215 153 177 147 208 0.63 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_61 - 454 DnaB_C PF03796.10 259 8.6e-12 37.8 0.1 1 1 8.7e-14 1.2e-11 37.3 0.1 2 182 197 378 196 447 0.88 # 47593 # 48954 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_125 - 556 Methyltransf_26 PF13659.1 117 5.2e-09 29.6 0.0 1 1 6.7e-11 9.5e-09 28.8 0.0 2 116 419 514 418 515 0.84 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_104 - 214 AAA_30 PF13604.1 196 3.2e-05 17.0 3.7 1 2 3e-06 0.00043 13.3 3.5 19 126 50 182 44 191 0.62 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 AAA_30 PF13604.1 196 3.2e-05 17.0 3.7 2 2 0.0097 1.4 1.8 0.1 36 68 167 199 164 202 0.80 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 FtsK_SpoIIIE PF01580.13 205 1.2e-05 18.3 0.0 1 2 7.5e-06 0.0011 11.9 0.0 20 58 30 69 19 76 0.82 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 FtsK_SpoIIIE PF01580.13 205 1.2e-05 18.3 0.0 2 2 0.0013 0.19 4.6 0.0 169 202 150 194 89 198 0.76 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_125 - 556 MTS PF05175.9 170 0.00073 12.3 0.0 1 1 1.2e-05 0.0017 11.1 0.0 26 148 412 521 405 532 0.61 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_28 - 346 RecA PF00154.16 323 8e-53 172.9 0.0 1 1 1.1e-54 1.5e-52 172.0 0.0 21 282 13 305 7 342 0.81 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_104 - 214 ABC_tran PF00005.22 137 5.6e-14 46.0 0.1 1 1 3.5e-13 2.5e-11 37.5 0.1 1 134 39 152 39 155 0.78 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_15 - 639 ABC_tran PF00005.22 137 2.8e-07 24.3 6.4 1 2 0.00011 0.008 9.9 1.2 19 36 41 58 40 295 0.75 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 639 ABC_tran PF00005.22 137 2.8e-07 24.3 6.4 2 2 4.9e-06 0.00035 14.3 0.3 31 126 431 565 390 569 0.60 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_69 - 105 NAD_binding_4 PF07993.7 249 0.00061 12.1 0.1 1 1 5.5e-06 0.00078 11.8 0.1 39 91 14 69 8 73 0.75 # 53590 # 53904 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_15 - 639 AAA_10 PF12846.2 304 2.1e-05 17.4 0.7 1 2 0.0016 0.075 5.8 0.0 9 23 41 55 39 93 0.82 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 639 AAA_10 PF12846.2 304 2.1e-05 17.4 0.7 2 2 0.00013 0.0061 9.4 0.3 49 262 425 617 394 627 0.77 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_104 - 214 AAA_10 PF12846.2 304 0.00025 13.9 1.2 1 2 3.4e-05 0.0016 11.2 0.2 6 36 54 84 51 105 0.85 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 AAA_10 PF12846.2 304 0.00025 13.9 1.2 2 2 0.028 1.3 1.7 0.1 224 260 148 184 95 191 0.78 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_28 - 346 AAA_10 PF12846.2 304 0.0012 11.7 0.1 1 1 4.8e-05 0.0023 10.8 0.1 6 47 54 96 50 233 0.86 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_15 - 639 SbcCD_C PF13558.1 90 7.8e-08 25.6 0.1 1 1 1.6e-09 2.3e-07 24.1 0.1 25 89 540 601 525 602 0.90 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_107 - 526 ResIII PF04851.10 184 1.3e-18 60.9 0.0 1 1 1.7e-20 2.4e-18 60.0 0.0 25 183 118 275 104 276 0.85 # 95651 # 97228 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_104 - 214 DUF2075 PF09848.4 352 0.00034 13.0 0.3 1 1 6.1e-06 0.00044 12.7 0.3 3 25 51 73 49 211 0.75 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_98 - 525 DUF2075 PF09848.4 352 0.00061 12.2 0.6 1 1 1.6e-05 0.0011 11.3 0.6 135 260 37 171 34 181 0.71 # 88248 # 89822 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.503 1_52 - 204 SPOUT_MTase PF02590.12 155 0.016 8.4 7.1 1 2 0.0014 0.2 4.8 0.6 4 68 6 91 4 115 0.53 # 40660 # 41271 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.516 1_52 - 204 SPOUT_MTase PF02590.12 155 0.016 8.4 7.1 2 2 0.00039 0.055 6.6 1.0 6 58 116 168 112 187 0.85 # 40660 # 41271 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.516 1_107 - 526 DEAD PF00270.24 169 1.9e-10 33.9 0.0 1 2 9.7e-12 1.4e-09 31.1 0.0 2 164 106 277 105 282 0.67 # 95651 # 97228 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_107 - 526 DEAD PF00270.24 169 1.9e-10 33.9 0.0 2 2 0.062 8.8 -0.8 0.0 63 101 390 431 384 434 0.72 # 95651 # 97228 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_64 - 222 CmcI PF04989.7 206 0.0003 13.5 0.0 1 1 3.4e-06 0.00048 12.8 0.0 35 115 5 88 3 100 0.83 # 50447 # 51112 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.491 1_104 - 214 DUF815 PF05673.8 250 0.00056 12.2 0.0 1 1 5.7e-06 0.00082 11.7 0.0 32 103 30 99 9 106 0.80 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_125 - 556 Methyltransf_27 PF13708.1 194 6.7e-46 149.6 0.5 1 2 2.8e-47 3.9e-45 147.1 0.3 3 194 84 297 82 297 0.90 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_125 - 556 Methyltransf_27 PF13708.1 194 6.7e-46 149.6 0.5 2 2 0.033 4.7 0.1 0.0 104 127 341 364 323 371 0.71 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_99 - 419 Terminase_3 PF04466.8 387 1.7e-07 24.0 0.0 1 2 4.1e-09 5.8e-07 22.2 0.0 2 123 24 143 23 228 0.88 # 89854 # 91110 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.526 1_99 - 419 Terminase_3 PF04466.8 387 1.7e-07 24.0 0.0 2 2 0.032 4.6 -0.5 0.0 342 385 357 402 269 404 0.73 # 89854 # 91110 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.526 1_125 - 556 TIGR00755 TIGR00755 256 2.5e-05 16.7 0.0 1 1 3.9e-07 5.5e-05 15.6 0.0 9 104 397 487 387 492 0.82 # 106528 # 108195 # -1 # ID=1_125;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 1_104 - 214 ArgK PF03308.11 267 6.7e-05 15.1 0.0 1 1 8e-07 0.00011 14.4 0.0 19 63 39 83 15 86 0.87 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 PIF1 PF05970.9 364 0.00028 13.2 0.0 1 1 3e-06 0.00042 12.7 0.0 20 55 47 82 31 84 0.84 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_27 - 240 GTP_EFTU PF00009.22 188 6e-05 15.9 0.1 1 1 9.3e-07 0.00013 14.8 0.1 104 173 129 197 126 238 0.85 # 20673 # 21392 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.435 1_38 - 413 RNA_helicase PF00910.17 107 0.0007 13.2 0.0 1 1 2.2e-05 0.0016 12.0 0.0 2 26 171 195 170 212 0.80 # 30710 # 31948 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_104 - 214 RNA_helicase PF00910.17 107 0.0013 12.3 0.2 1 1 0.00012 0.0088 9.7 0.2 1 23 52 74 52 117 0.85 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 UPF0079 PF02367.12 123 0.00018 14.6 0.1 1 1 3.4e-06 0.00049 13.2 0.1 11 45 45 80 37 84 0.80 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_99 - 419 Terminase_GpA PF05876.7 557 0.00023 12.9 0.0 1 1 3.4e-06 0.00049 11.9 0.0 35 149 26 132 10 136 0.80 # 89854 # 91110 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.526 1_104 - 214 NACHT PF05729.7 166 5.6e-05 16.2 0.1 1 1 8.7e-07 0.00012 15.1 0.1 2 38 51 88 50 112 0.85 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_61 - 454 AAA_25 PF13481.1 194 1.1e-13 44.5 0.1 1 1 6.3e-15 2.2e-13 43.4 0.1 14 193 196 379 182 380 0.81 # 47593 # 48954 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_28 - 346 AAA_25 PF13481.1 194 1.1e-06 21.6 0.0 1 1 1.5e-07 5.4e-06 19.3 0.0 12 157 24 155 17 214 0.69 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_104 - 214 AAA_25 PF13481.1 194 2.8e-05 17.0 0.1 1 2 1.5e-05 0.00054 12.8 0.0 18 58 30 74 16 95 0.76 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_104 - 214 AAA_25 PF13481.1 194 2.8e-05 17.0 0.1 2 2 0.028 0.98 2.1 0.1 166 185 163 182 141 186 0.85 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 1_15 - 639 AAA_25 PF13481.1 194 0.00015 14.6 0.0 1 1 2.5e-05 0.00089 12.1 0.0 39 136 39 134 28 142 0.67 # 11469 # 13385 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.532 1_107 - 526 SNF2_N PF00176.18 299 0.00015 14.0 0.0 1 1 1.8e-06 0.00026 13.2 0.0 122 182 223 284 180 292 0.76 # 95651 # 97228 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.494 1_5 - 217 AAA_28 PF13521.1 163 5.7e-10 32.8 0.0 1 1 5.8e-12 8.3e-10 32.3 0.0 1 129 2 145 2 150 0.72 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_28 - 346 Rad51 PF08423.6 256 2e-07 23.5 0.0 1 1 2.2e-08 3.1e-06 19.6 0.0 31 240 42 264 27 271 0.72 # 21379 # 22416 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.500 1_38 - 413 AAA_5 PF07728.9 139 2.3e-19 62.9 0.0 1 1 5.8e-21 4.1e-19 62.1 0.0 4 126 172 292 171 307 0.92 # 30710 # 31948 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_5 - 217 AAA_5 PF07728.9 139 0.00028 14.0 0.0 1 1 7.1e-06 0.0005 13.2 0.0 4 26 5 27 2 33 0.89 # 2360 # 3010 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.507 1_104 - 214 APS_kinase PF01583.15 157 1.7e-05 17.9 0.0 1 1 2.2e-07 3.1e-05 17.1 0.0 2 37 49 84 48 105 0.86 # 93580 # 94221 # -1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.536 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0d71da3e-a809-4a50-a8f8-6063e3fb605e # Target file: checkm_output/bins/pm1292/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1292/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0d71da3e-a809-4a50-a8f8-6063e3fb605e checkm_output/bins/pm1292/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:17 2020 # [ok]