# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 950 Mg_chelatase PF01078.16 207 4.5e-06 18.2 0.1 1 3 0.00027 0.017 6.5 0.0 12 48 292 329 280 365 0.65 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Mg_chelatase PF01078.16 207 4.5e-06 18.2 0.1 2 3 0.00019 0.012 7.0 0.0 24 44 645 665 614 690 0.86 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Mg_chelatase PF01078.16 207 4.5e-06 18.2 0.1 3 3 0.022 1.4 0.2 0.0 108 137 717 746 702 808 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Torsin PF06309.6 127 5.3e-05 15.4 0.0 1 1 3.4e-06 0.00021 13.4 0.0 15 80 603 670 594 677 0.85 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 ABC_ATPase PF09818.4 448 0.0022 8.8 1.8 1 2 0.00069 0.043 4.5 0.2 240 264 27 52 19 67 0.89 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 ABC_ATPase PF09818.4 448 0.0022 8.8 1.8 2 2 0.0022 0.13 2.9 0.1 376 420 182 226 129 237 0.83 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 IstB_IS21 PF01695.12 178 6.2e-10 31.0 0.3 1 2 5e-06 0.00031 12.4 0.0 45 73 301 329 287 371 0.82 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 IstB_IS21 PF01695.12 178 6.2e-10 31.0 0.3 2 2 6.7e-07 4.1e-05 15.3 0.0 49 79 645 675 641 693 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_3 - 402 MipZ PF09140.6 261 7.6e-07 20.6 0.0 1 2 0.0017 0.11 3.8 0.0 3 50 111 163 109 193 0.72 # 2447 # 3652 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_3 - 402 MipZ PF09140.6 261 7.6e-07 20.6 0.0 2 2 8.7e-07 5.4e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 2447 # 3652 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_3 - 276 Usp PF00582.21 140 3.3e-40 129.8 0.2 1 2 1.4e-20 8.9e-19 60.3 0.2 1 140 1 152 1 152 0.88 # 2057 # 2884 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 2_3 - 276 Usp PF00582.21 140 3.3e-40 129.8 0.2 2 2 2.4e-21 1.5e-19 62.8 0.0 62 140 202 275 158 275 0.80 # 2057 # 2884 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.531 1_17 - 950 AAA_2 PF07724.9 171 2.8e-59 192.1 0.4 1 2 1.5e-05 0.00093 11.4 0.1 3 109 303 415 301 434 0.68 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_2 PF07724.9 171 2.8e-59 192.1 0.4 2 2 1e-56 6.2e-55 177.9 0.0 1 171 641 810 641 810 0.97 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF87 PF01935.12 229 0.00015 13.8 0.2 1 3 0.095 5.9 -1.2 0.0 29 49 309 329 307 340 0.86 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF87 PF01935.12 229 0.00015 13.8 0.2 2 3 0.096 6 -1.2 0.0 86 108 585 607 500 637 0.66 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF87 PF01935.12 229 0.00015 13.8 0.2 3 3 4.1e-05 0.0026 9.8 0.0 29 66 649 684 645 721 0.84 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_22 PF13401.1 131 2.6e-11 36.1 0.3 1 2 3.8e-06 0.00012 14.5 0.1 7 98 306 386 300 400 0.76 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_22 PF13401.1 131 2.6e-11 36.1 0.3 2 2 9.3e-07 2.9e-05 16.5 0.0 8 113 647 740 644 760 0.79 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 AAA_22 PF13401.1 131 0.00017 14.0 0.6 1 3 0.0003 0.0094 8.3 0.1 7 25 35 53 29 82 0.86 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA_22 PF13401.1 131 0.00017 14.0 0.6 2 3 0.038 1.2 1.5 0.0 85 122 155 200 108 208 0.73 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA_22 PF13401.1 131 0.00017 14.0 0.6 3 3 0.013 0.39 3.1 0.1 55 98 182 230 149 239 0.57 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 DNA_pol3_delta2 PF13177.1 162 1.3e-05 17.1 0.0 1 1 1.2e-06 7.4e-05 14.7 0.0 21 125 645 738 636 742 0.82 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_3 PF07726.6 131 8.7e-07 20.9 0.0 1 3 0.0014 0.088 4.7 0.0 4 23 308 327 306 332 0.87 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_3 PF07726.6 131 8.7e-07 20.9 0.0 2 3 0.0047 0.29 3.0 0.0 5 25 649 669 645 684 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_3 PF07726.6 131 8.7e-07 20.9 0.0 3 3 6.7e-05 0.0042 9.0 0.0 64 111 717 764 695 768 0.89 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_17 PF13207.1 121 2e-08 27.3 6.3 1 2 0.00017 0.01 8.9 0.0 4 52 308 372 307 446 0.61 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_17 PF13207.1 121 2e-08 27.3 6.3 2 2 2.9e-07 1.8e-05 17.8 0.5 6 34 650 682 646 874 0.73 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 AAA_21 PF13304.1 303 5.2e-13 41.7 0.1 1 2 8.5e-05 0.0053 8.9 0.1 3 25 36 59 34 78 0.80 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA_21 PF13304.1 303 5.2e-13 41.7 0.1 2 2 2.1e-11 1.3e-09 30.6 0.0 232 299 139 204 114 207 0.90 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 Miro PF08477.8 119 0.00031 13.5 0.0 1 1 8.8e-05 0.0027 10.4 0.0 3 43 307 346 306 382 0.72 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 Miro PF08477.8 119 0.00049 12.8 0.0 1 1 3.2e-05 0.00099 11.9 0.0 3 27 36 59 35 85 0.80 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 MobB PF03205.9 140 0.00028 12.8 0.0 1 2 0.0063 0.39 2.6 0.0 5 26 308 329 307 339 0.86 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 MobB PF03205.9 140 0.00028 12.8 0.0 2 2 0.00025 0.016 7.2 0.0 3 28 646 671 644 686 0.83 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Zeta_toxin PF06414.7 201 5.7e-08 24.3 0.8 1 3 0.00097 0.06 4.6 0.0 16 41 303 328 289 338 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Zeta_toxin PF06414.7 201 5.7e-08 24.3 0.8 2 3 0.059 3.6 -1.2 0.5 107 153 494 548 491 586 0.67 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Zeta_toxin PF06414.7 201 5.7e-08 24.3 0.8 3 3 3.4e-07 2.1e-05 15.9 0.0 12 99 638 736 628 742 0.83 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Ribosomal_S7 PF00177.16 148 0.00025 12.9 0.1 1 1 9.3e-06 0.00058 11.7 0.1 42 143 291 387 270 392 0.89 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_25 - 570 FAD_binding_3 PF01494.14 356 3.8e-07 21.6 0.4 1 1 9.4e-09 5.8e-07 21.0 0.4 3 44 410 451 408 454 0.95 # 20461 # 22170 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.660 1_17 - 950 Arch_ATPase PF01637.13 234 2.2e-08 26.3 1.6 1 3 9.4e-05 0.0058 8.5 0.1 3 43 286 326 284 334 0.85 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Arch_ATPase PF01637.13 234 2.2e-08 26.3 1.6 2 3 0.00023 0.014 7.3 0.0 97 132 354 390 325 417 0.82 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Arch_ATPase PF01637.13 234 2.2e-08 26.3 1.6 3 3 0.00032 0.02 6.8 0.0 24 64 647 686 637 743 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_16 PF13191.1 185 6.7e-16 51.0 6.2 1 3 6.8e-07 2.1e-05 16.8 0.0 2 47 284 326 283 337 0.88 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_16 PF13191.1 185 6.7e-16 51.0 6.2 2 3 0.00024 0.0073 8.5 0.0 125 160 350 385 330 393 0.91 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_16 PF13191.1 185 6.7e-16 51.0 6.2 3 3 4.3e-09 1.3e-07 24.0 0.0 1 65 614 684 614 694 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 AAA_16 PF13191.1 185 0.00088 11.5 5.7 1 1 0.00019 0.0058 8.8 5.7 22 46 30 54 18 249 0.64 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 AAA_23 PF13476.1 202 1.7e-06 20.7 1.3 1 2 0.0016 0.096 5.2 1.4 23 200 307 564 287 613 0.46 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_23 PF13476.1 202 1.7e-06 20.7 1.3 2 2 2e-05 0.0013 11.3 0.0 22 59 646 683 640 828 0.63 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_18 PF13238.1 129 3.4e-09 29.3 7.2 1 2 5.6e-07 3.5e-05 16.4 0.0 3 75 308 377 307 389 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_18 PF13238.1 129 3.4e-09 29.3 7.2 2 2 1.3e-06 7.8e-05 15.2 0.6 3 23 648 686 647 793 0.62 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_3 - 402 CbiA PF01656.18 195 2.4e-19 61.7 0.0 1 1 7.1e-21 4.4e-19 60.8 0.0 1 142 111 292 111 327 0.76 # 2447 # 3652 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_17 - 950 AAA_14 PF13173.1 128 1.9e-09 29.7 0.0 1 2 4.9e-06 0.0003 12.9 0.0 6 73 307 387 302 440 0.77 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_14 PF13173.1 128 1.9e-09 29.7 0.0 2 2 2.3e-06 0.00014 14.0 0.0 7 87 648 742 644 767 0.70 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_29 PF13555.1 62 1.9e-05 16.4 0.0 1 2 0.00031 0.0097 7.8 0.0 20 48 300 328 292 334 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_29 PF13555.1 62 1.9e-05 16.4 0.0 2 2 0.0013 0.039 5.8 0.0 25 50 645 670 637 675 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 AAA_29 PF13555.1 62 0.0003 12.6 0.0 1 1 2.3e-05 0.00072 11.4 0.0 17 46 27 55 20 66 0.76 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 AAA PF00004.24 132 7e-31 99.4 0.0 1 2 2.1e-19 6.6e-18 57.4 0.0 2 115 307 428 306 444 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA PF00004.24 132 7e-31 99.4 0.0 2 2 9e-14 2.8e-12 39.2 0.0 2 127 647 783 646 788 0.84 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 AAA PF00004.24 132 0.00065 12.2 0.2 1 2 0.0022 0.068 5.6 0.0 3 21 37 55 35 100 0.71 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA PF00004.24 132 0.00065 12.2 0.2 2 2 0.018 0.55 2.7 0.0 48 66 150 169 134 213 0.73 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 CobU PF02283.11 167 0.00074 11.2 2.8 1 3 0.0026 0.16 3.6 0.0 87 125 347 385 335 394 0.83 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 CobU PF02283.11 167 0.00074 11.2 2.8 2 3 0.0062 0.38 2.3 2.0 20 122 526 627 516 635 0.73 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 CobU PF02283.11 167 0.00074 11.2 2.8 3 3 0.013 0.79 1.3 0.0 2 80 647 723 646 778 0.71 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Sigma54_activat PF00158.21 168 3.1e-13 41.8 0.1 1 2 0.00015 0.0092 7.7 0.1 2 61 285 349 284 393 0.59 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Sigma54_activat PF00158.21 168 3.1e-13 41.8 0.1 2 2 1.4e-11 8.4e-10 30.6 0.0 22 153 643 773 615 777 0.84 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 MMR_HSR1 PF01926.18 116 1.3e-05 17.4 0.0 1 2 7.3e-05 0.0045 9.2 0.0 3 44 307 344 305 403 0.67 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 MMR_HSR1 PF01926.18 116 1.3e-05 17.4 0.0 2 2 0.0011 0.07 5.4 0.0 2 32 646 673 645 763 0.62 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF258 PF03193.11 161 8.4e-07 20.5 0.0 1 2 2.7e-05 0.0017 9.8 0.0 18 59 286 327 270 374 0.74 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF258 PF03193.11 161 8.4e-07 20.5 0.0 2 2 9.8e-05 0.0061 8.0 0.0 36 58 644 666 629 702 0.83 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_3 - 402 AAA_31 PF13614.1 157 4.2e-05 15.8 0.0 1 2 0.055 3.4 -0.2 0.0 7 58 115 171 109 206 0.64 # 2447 # 3652 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_3 - 402 AAA_31 PF13614.1 157 4.2e-05 15.8 0.0 2 2 5.5e-06 0.00034 12.8 0.0 108 147 235 273 230 279 0.86 # 2447 # 3652 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_17 - 950 NTPase_1 PF03266.10 168 8.1e-05 14.6 0.3 1 3 0.0005 0.031 6.2 0.0 4 25 308 329 306 339 0.85 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 NTPase_1 PF03266.10 168 8.1e-05 14.6 0.3 2 3 0.042 2.6 -0.1 0.0 80 104 358 384 345 387 0.83 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 NTPase_1 PF03266.10 168 8.1e-05 14.6 0.3 3 3 0.0034 0.21 3.5 0.0 6 23 650 667 645 674 0.85 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_33 PF13671.1 143 7.3e-07 21.4 2.0 1 4 0.0024 0.15 4.2 0.0 3 22 307 326 307 377 0.82 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_33 PF13671.1 143 7.3e-07 21.4 2.0 2 4 6.7e-05 0.0042 9.2 0.0 3 79 647 756 646 765 0.56 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_33 PF13671.1 143 7.3e-07 21.4 2.0 3 4 0.015 0.94 1.6 0.1 109 142 768 801 757 802 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_33 PF13671.1 143 7.3e-07 21.4 2.0 4 4 0.027 1.6 0.8 0.0 58 82 828 852 811 861 0.86 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 FtsK_SpoIIIE PF01580.13 205 6.2e-05 14.7 0.0 1 2 0.00026 0.016 6.8 0.0 19 69 284 334 269 337 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 FtsK_SpoIIIE PF01580.13 205 6.2e-05 14.7 0.0 2 2 0.0011 0.069 4.8 0.0 40 86 645 688 625 694 0.85 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 ABC_tran PF00005.22 137 2.4e-32 104.4 0.0 1 1 1.1e-33 3.5e-32 103.8 0.0 3 137 24 172 22 172 0.88 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 ABC_tran PF00005.22 137 1.1e-05 17.9 0.0 1 2 0.0039 0.12 4.9 0.0 15 42 307 332 298 381 0.77 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 ABC_tran PF00005.22 137 1.1e-05 17.9 0.0 2 2 0.00015 0.0046 9.5 0.0 13 39 645 671 638 696 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 RuvB_N PF05496.7 234 1.7e-08 26.0 1.1 1 4 0.00018 0.011 6.9 0.0 16 75 274 328 261 337 0.67 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 RuvB_N PF05496.7 234 1.7e-08 26.0 1.1 2 4 0.0079 0.49 1.6 0.0 96 113 370 387 343 390 0.77 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 RuvB_N PF05496.7 234 1.7e-08 26.0 1.1 3 4 6.4e-06 0.00039 11.7 0.0 17 74 606 667 593 673 0.68 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 RuvB_N PF05496.7 234 1.7e-08 26.0 1.1 4 4 0.02 1.2 0.3 0.0 101 130 715 744 706 756 0.88 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_19 PF13245.1 76 2.7e-06 19.4 0.1 1 2 3.6e-05 0.0011 11.0 0.0 9 37 304 329 296 368 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_19 PF13245.1 76 2.7e-06 19.4 0.1 2 2 0.002 0.061 5.4 0.0 15 35 648 668 623 692 0.82 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 AAA_19 PF13245.1 76 0.00071 11.6 0.1 1 1 2.3e-05 0.00071 11.6 0.1 11 36 33 60 26 92 0.70 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA_10 PF12846.2 304 2e-06 19.6 0.2 1 2 2.1e-05 0.00065 11.4 0.3 6 36 37 69 34 103 0.87 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA_10 PF12846.2 304 2e-06 19.6 0.2 2 2 0.00089 0.027 6.0 0.0 215 267 156 208 140 236 0.79 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 AAA_10 PF12846.2 304 9e-06 17.5 0.1 1 2 0.031 0.95 1.0 0.0 4 25 306 327 303 333 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_10 PF12846.2 304 9e-06 17.5 0.1 2 2 2e-05 0.00061 11.5 0.0 3 192 645 915 644 928 0.67 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_25 - 570 ThiF PF00899.16 136 0.00028 12.9 0.1 1 1 1.1e-05 0.00067 11.7 0.1 4 38 410 445 408 448 0.86 # 20461 # 22170 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.660 1_17 - 950 ResIII PF04851.10 184 9.9e-05 14.4 0.0 1 3 0.012 0.73 1.8 0.0 10 45 289 323 285 336 0.79 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 ResIII PF04851.10 184 9.9e-05 14.4 0.0 2 3 0.03 1.8 0.5 0.0 143 160 372 389 335 430 0.70 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 ResIII PF04851.10 184 9.9e-05 14.4 0.0 3 3 0.00034 0.021 6.9 0.0 8 47 618 665 612 678 0.80 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 TIP49 PF06068.8 398 4.2e-06 17.9 1.0 1 3 0.0021 0.13 3.1 0.0 54 75 307 328 278 337 0.77 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 TIP49 PF06068.8 398 4.2e-06 17.9 1.0 2 3 0.014 0.86 0.4 0.1 257 289 354 386 343 388 0.79 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 TIP49 PF06068.8 398 4.2e-06 17.9 1.0 3 3 1.2e-05 0.00077 10.4 0.0 21 75 610 668 584 682 0.77 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF815 PF05673.8 250 4.8e-06 17.8 2.7 1 3 2e-05 0.0013 9.9 0.0 41 114 291 382 284 385 0.69 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF815 PF05673.8 250 4.8e-06 17.8 2.7 2 3 0.057 3.5 -1.4 0.5 199 248 533 586 526 588 0.72 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 DUF815 PF05673.8 250 4.8e-06 17.8 2.7 3 3 0.00032 0.02 6.0 0.0 51 92 641 682 599 696 0.70 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Sigma54_activ_2 PF14532.1 138 6.2e-05 15.3 0.0 1 2 0.00013 0.0083 8.4 0.0 7 44 288 326 286 384 0.83 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 Sigma54_activ_2 PF14532.1 138 6.2e-05 15.3 0.0 2 2 0.0035 0.22 3.8 0.0 25 44 647 666 634 743 0.89 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 RNA_helicase PF00910.17 107 7e-07 21.7 0.0 1 2 0.00032 0.02 7.4 0.0 3 23 308 328 307 346 0.86 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 RNA_helicase PF00910.17 107 7e-07 21.7 0.0 2 2 4.7e-05 0.0029 10.1 0.0 2 23 647 668 646 686 0.87 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 UPF0079 PF02367.12 123 6.7e-05 14.8 0.1 1 2 0.0008 0.05 5.5 0.0 19 39 307 327 296 334 0.87 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 UPF0079 PF02367.12 123 6.7e-05 14.8 0.1 2 2 0.00039 0.024 6.5 0.0 18 41 646 670 635 675 0.81 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_25 - 570 TrkA_N PF02254.13 116 2.3e-19 61.8 0.1 1 1 6.9e-21 4.3e-19 60.9 0.1 1 107 411 517 411 524 0.95 # 20461 # 22170 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.660 1_17 - 950 AAA_24 PF13479.1 213 0.00014 13.7 0.0 1 2 0.0025 0.16 3.7 0.0 5 23 305 323 301 329 0.78 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_24 PF13479.1 213 0.00014 13.7 0.0 2 2 0.0002 0.013 7.3 0.0 6 26 646 666 642 737 0.68 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 NACHT PF05729.7 166 1.5e-07 23.5 0.0 1 3 6e-05 0.0019 10.1 0.0 4 31 307 334 305 342 0.89 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 NACHT PF05729.7 166 1.5e-07 23.5 0.0 2 3 0.069 2.1 0.2 0.0 119 142 505 528 496 546 0.84 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 NACHT PF05729.7 166 1.5e-07 23.5 0.0 3 3 0.00052 0.016 7.1 0.0 3 24 646 667 644 678 0.86 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 NACHT PF05729.7 166 0.00054 11.9 0.8 1 2 0.00013 0.004 9.0 0.2 3 21 35 53 33 64 0.88 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 NACHT PF05729.7 166 0.00054 11.9 0.8 2 2 0.036 1.1 1.1 0.0 76 98 214 236 176 248 0.67 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 AAA_25 PF13481.1 194 5.7e-07 21.3 0.0 1 2 3.8e-05 0.0012 10.5 0.0 37 111 307 384 300 417 0.78 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_25 PF13481.1 194 5.7e-07 21.3 0.0 2 2 0.00025 0.0076 7.9 0.0 34 58 644 668 612 745 0.86 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 4_2 - 264 AAA_25 PF13481.1 194 0.00015 13.4 1.7 1 3 4.6e-05 0.0014 10.2 0.0 31 54 30 53 21 110 0.91 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA_25 PF13481.1 194 0.00015 13.4 1.7 2 3 0.087 2.7 -0.5 0.0 172 188 186 202 161 204 0.81 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 264 AAA_25 PF13481.1 194 0.00015 13.4 1.7 3 3 0.024 0.73 1.4 0.4 125 156 206 233 178 237 0.54 # 823 # 1614 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.523 1_17 - 950 AAA_28 PF13521.1 163 2.3e-07 23.1 0.0 1 2 2.1e-05 0.0013 11.0 0.0 3 34 307 339 305 383 0.71 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_28 PF13521.1 163 2.3e-07 23.1 0.0 2 2 9.7e-05 0.006 8.8 0.0 2 22 646 666 645 687 0.85 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_5 PF07728.9 139 6e-20 63.6 0.1 1 2 1.1e-07 7.1e-06 18.0 0.1 3 76 307 386 305 390 0.74 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 1_17 - 950 AAA_5 PF07728.9 139 6e-20 63.6 0.1 2 2 4.7e-15 2.9e-13 42.0 0.0 2 125 646 767 645 777 0.82 # 12640 # 15489 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.654 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/22722717-88eb-4e4c-b755-a56b7a12f204 # Target file: checkm_output/bins/pm1287/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1287/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/22722717-88eb-4e4c-b755-a56b7a12f204 checkm_output/bins/pm1287/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:14 2020 # [ok]