# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_73 - 268 Mg_chelatase PF01078.16 207 0.00021 13.1 0.0 1 1 7e-06 0.00058 11.7 0.0 23 43 97 117 82 137 0.91 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 IstB_IS21 PF01695.12 178 3.1e-69 224.5 0.2 1 1 5.3e-71 4.4e-69 224.1 0.2 2 178 52 228 51 228 0.99 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_64 - 207 MipZ PF09140.6 261 3.8e-15 48.2 0.6 1 2 3.5e-10 1.4e-08 26.7 0.0 2 47 3 47 2 58 0.88 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_64 - 207 MipZ PF09140.6 261 3.8e-15 48.2 0.6 2 2 2.8e-08 1.1e-06 20.4 0.2 87 142 65 119 46 155 0.76 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 221 MipZ PF09140.6 261 2e-11 36.1 0.7 1 1 9.3e-11 3.8e-09 28.6 0.6 2 131 4 112 3 136 0.80 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_48 - 47 DUF87 PF01935.12 229 0.00026 13.4 0.1 1 1 3.4e-06 0.00028 13.4 0.1 24 39 17 32 7 35 0.87 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_48 - 47 NB-ARC PF00931.17 287 0.00057 11.4 0.0 1 1 6.9e-06 0.00057 11.4 0.0 12 40 12 37 1 45 0.76 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 AAA_22 PF13401.1 131 5.2e-06 19.3 1.0 1 2 1.7e-05 0.00071 12.4 0.1 3 25 95 117 92 132 0.89 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 AAA_22 PF13401.1 131 5.2e-06 19.3 1.0 2 2 0.0044 0.18 4.6 0.0 88 117 149 193 122 201 0.65 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 AAA_22 PF13401.1 131 5.3e-06 19.3 0.0 1 1 1.4e-07 5.6e-06 19.2 0.0 2 23 14 35 9 43 0.89 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_64 - 207 DUF1611 PF07755.6 301 2.7e-05 15.5 0.1 1 1 4.8e-07 3.9e-05 15.0 0.1 124 201 13 91 11 109 0.74 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_64 - 207 ATP_bind_1 PF03029.12 238 1.3e-05 17.4 0.1 1 1 2.4e-07 2e-05 16.8 0.1 6 43 12 49 10 96 0.85 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_64 - 207 SRP54 PF00448.17 196 1.7e-05 16.9 1.9 1 1 5.8e-07 2.4e-05 16.5 0.5 11 96 12 88 1 98 0.71 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 221 SRP54 PF00448.17 196 0.00034 12.7 0.0 1 1 2.3e-05 0.00092 11.3 0.0 10 95 12 91 3 113 0.78 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_64 - 207 AAA_17 PF13207.1 121 2.9e-05 17.5 0.0 1 1 8.7e-07 3.6e-05 17.2 0.0 9 81 12 88 11 184 0.77 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_73 - 268 AAA_17 PF13207.1 121 5.2e-05 16.7 0.4 1 1 2e-06 8e-05 16.1 0.4 2 25 99 121 98 255 0.81 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_80 - 338 ADH_zinc_N_2 PF13602.1 127 3e-14 46.7 0.1 1 1 7.6e-16 6.2e-14 45.6 0.1 1 127 194 334 194 334 0.75 # 56524 # 57537 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 221 MobB PF03205.9 140 4.3e-06 19.1 0.1 1 2 1.8e-05 0.00073 11.9 0.0 2 38 4 41 3 53 0.85 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_13 - 221 MobB PF03205.9 140 4.3e-06 19.1 0.1 2 2 0.0021 0.086 5.2 0.0 44 76 85 120 71 133 0.81 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_64 - 207 MobB PF03205.9 140 1.1e-05 17.9 1.0 1 1 1.1e-06 4.6e-05 15.8 0.3 5 108 6 92 2 102 0.72 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_80 - 338 ADH_zinc_N PF00107.21 130 4.7e-14 44.7 0.0 1 1 8.6e-16 7.1e-14 44.1 0.0 1 91 161 250 161 293 0.88 # 56524 # 57537 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_13 - 221 ArsA_ATPase PF02374.10 305 3.1e-11 35.4 0.2 1 2 2.3e-11 9.6e-10 30.5 0.1 4 39 6 41 3 51 0.91 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_13 - 221 ArsA_ATPase PF02374.10 305 3.1e-11 35.4 0.2 2 2 0.0067 0.27 2.8 0.0 103 165 54 116 47 141 0.74 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_64 - 207 ArsA_ATPase PF02374.10 305 9.3e-08 24.0 2.6 1 2 3.2e-09 1.3e-07 23.5 0.6 5 45 6 46 1 60 0.89 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_64 - 207 ArsA_ATPase PF02374.10 305 9.3e-08 24.0 2.6 2 2 0.048 2 -0.1 0.1 123 135 72 84 50 86 0.79 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_73 - 268 PhoH PF02562.11 205 9.8e-07 20.8 0.0 1 2 6.5e-08 5.4e-06 18.4 0.0 18 46 95 123 82 141 0.83 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 PhoH PF02562.11 205 9.8e-07 20.8 0.0 2 2 0.073 6 -1.4 0.0 123 159 162 203 156 228 0.61 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 MCM PF00493.18 331 3.9e-05 15.1 0.0 1 1 4.9e-07 4e-05 15.1 0.0 46 78 5 37 2 45 0.79 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_39 - 348 T2SE PF00437.15 272 9.9e-47 151.7 0.0 1 1 2.9e-48 1.2e-46 151.4 0.0 11 246 28 289 18 320 0.88 # 28641 # 29684 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_48 - 47 T2SE PF00437.15 272 1.1e-06 20.3 0.0 1 1 2.7e-08 1.1e-06 20.3 0.0 111 146 2 34 1 41 0.87 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_39 - 348 Zeta_toxin PF06414.7 201 0.00027 12.7 0.0 1 1 6.1e-06 0.0005 11.8 0.0 18 60 170 213 157 239 0.76 # 28641 # 29684 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_64 - 207 VirC1 PF07015.6 231 1e-16 53.3 0.1 1 1 3.7e-18 1.5e-16 52.8 0.1 1 128 1 120 1 173 0.84 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 221 VirC1 PF07015.6 231 7.4e-08 24.3 0.0 1 1 3.5e-09 1.4e-07 23.4 0.0 3 54 4 55 2 67 0.91 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_64 - 207 Fer4_NifH PF00142.13 273 1e-07 24.0 0.0 1 1 3.7e-09 1.5e-07 23.4 0.0 7 63 9 65 2 93 0.76 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 221 Fer4_NifH PF00142.13 273 2.1e-07 22.9 0.1 1 1 1.3e-08 5.2e-07 21.7 0.0 6 41 9 44 5 50 0.90 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_48 - 47 AAA_16 PF13191.1 185 7.4e-06 18.7 0.0 1 1 1.8e-07 7.4e-06 18.7 0.0 22 44 14 36 2 42 0.80 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 AAA_16 PF13191.1 185 4e-05 16.3 0.2 1 1 2.4e-06 9.7e-05 15.0 0.2 18 45 90 117 79 169 0.78 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_13 - 221 AAA_18 PF13238.1 129 0.00025 14.0 0.0 1 1 1.2e-05 0.00048 13.1 0.0 8 79 13 86 11 108 0.82 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_73 - 268 AAA_18 PF13238.1 129 0.00031 13.7 0.0 1 1 1.4e-05 0.00058 12.8 0.0 1 23 99 125 99 195 0.81 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_64 - 207 CbiA PF01656.18 195 7.2e-29 93.2 1.2 1 1 2.8e-30 1.1e-28 92.5 1.2 1 143 4 124 4 178 0.74 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 221 CbiA PF01656.18 195 1.9e-17 55.9 0.1 1 1 9.3e-19 3.8e-17 54.9 0.1 2 173 6 161 5 182 0.75 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_73 - 268 KaiC PF06745.8 227 1.9e-05 16.5 0.0 1 1 4.8e-07 4e-05 15.4 0.0 20 53 97 130 93 145 0.87 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 AAA_14 PF13173.1 128 0.00018 14.1 0.0 1 1 6.6e-06 0.00054 12.5 0.0 3 97 97 198 95 249 0.69 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 AAA_29 PF13555.1 62 0.00022 13.4 0.1 1 1 3.1e-06 0.00025 13.2 0.1 21 40 15 33 3 38 0.79 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 AAA PF00004.24 132 3.1e-06 20.1 0.0 1 1 6.4e-08 5.2e-06 19.3 0.0 1 74 99 174 99 227 0.66 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 Bac_DnaA PF00308.13 219 5.4e-09 28.6 0.0 1 1 9.3e-11 7.6e-09 28.1 0.0 34 137 96 197 72 215 0.85 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 Sigma54_activat PF00158.21 168 5.5e-05 15.3 0.0 1 1 1.3e-06 5.5e-05 15.3 0.0 16 38 10 32 1 42 0.74 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 Sigma54_activat PF00158.21 168 0.00041 12.5 0.1 1 1 2.8e-05 0.0011 11.0 0.1 11 51 83 125 74 190 0.80 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_40 - 612 TraG-D_C PF12696.2 128 1.9e-28 91.5 0.0 1 1 8.4e-30 3.4e-28 90.7 0.0 2 126 416 533 415 535 0.87 # 29687 # 31522 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_43 - 68 TraG-D_C PF12696.2 128 2.2e-07 23.5 0.1 1 1 6.1e-09 2.5e-07 23.3 0.1 18 72 1 55 1 61 0.86 # 32326 # 32529 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.314 1_38 - 404 DLIC PF05783.6 472 0.0087 7.3 6.5 1 1 0.00017 0.014 6.6 6.5 378 458 118 204 77 210 0.61 # 27418 # 28629 # 1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.498 1_64 - 207 AAA_31 PF13614.1 157 6.3e-10 31.8 0.3 1 2 1.1e-08 4.4e-07 22.6 0.0 1 39 2 40 2 56 0.94 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_64 - 207 AAA_31 PF13614.1 157 6.3e-10 31.8 0.3 2 2 0.00048 0.02 7.5 0.1 104 152 63 109 53 113 0.82 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 221 AAA_31 PF13614.1 157 1.1e-08 27.8 0.1 1 2 1e-08 4.1e-07 22.7 0.0 1 41 3 43 3 57 0.91 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_13 - 221 AAA_31 PF13614.1 157 1.1e-08 27.8 0.1 2 2 0.011 0.43 3.1 0.0 111 151 73 112 63 115 0.87 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_64 - 207 NTPase_1 PF03266.10 168 0.00045 12.6 0.0 1 1 1e-05 0.00082 11.7 0.0 7 64 10 72 5 103 0.83 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_73 - 268 AAA_33 PF13671.1 143 0.00045 12.7 0.9 1 1 1.2e-05 0.001 11.6 0.9 2 22 99 118 99 264 0.80 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_64 - 207 KTI12 PF08433.5 270 0.00012 14.0 0.0 1 1 4.6e-06 0.00019 13.3 0.0 12 78 13 83 7 88 0.78 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_73 - 268 KTI12 PF08433.5 270 0.00019 13.3 0.0 1 1 1.4e-05 0.00059 11.7 0.0 4 82 99 170 98 206 0.81 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 AAA_30 PF13604.1 196 2.5e-05 16.5 0.1 1 1 7.1e-07 2.9e-05 16.3 0.1 8 38 6 36 2 38 0.87 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 AAA_30 PF13604.1 196 2.9e-05 16.3 0.4 1 1 4.3e-06 0.00017 13.8 0.4 13 53 91 132 85 180 0.83 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 FtsK_SpoIIIE PF01580.13 205 6.4e-06 18.4 0.1 1 1 1.7e-07 6.9e-06 18.3 0.1 35 55 12 33 2 35 0.78 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 FtsK_SpoIIIE PF01580.13 205 2.3e-05 16.6 0.0 1 1 1e-06 4.3e-05 15.7 0.0 31 74 83 131 67 151 0.86 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_13 - 221 Dynamin_N PF00350.18 168 0.00033 13.1 0.0 1 1 6.5e-06 0.00053 12.4 0.0 49 159 32 132 13 144 0.80 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_48 - 47 DAP3 PF10236.4 309 0.0008 11.0 0.2 1 1 1e-05 0.00085 10.9 0.2 18 42 11 35 3 38 0.81 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 AAA_19 PF13245.1 76 5.1e-08 25.3 0.4 1 1 2.1e-09 1.7e-07 23.6 0.4 10 44 97 127 87 135 0.75 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_80 - 338 NAD_binding_10 PF13460.1 183 0.0002 14.0 0.3 1 1 4.6e-06 0.00038 13.1 0.3 1 36 153 189 153 237 0.87 # 56524 # 57537 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_32 - 920 AAA_10 PF12846.2 304 1e-33 109.6 0.0 1 1 8.7e-35 3.6e-33 107.9 0.0 3 292 539 823 538 832 0.89 # 20687 # 23446 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_43 - 68 AAA_10 PF12846.2 304 3.5e-06 19.2 0.1 1 1 9.5e-08 3.9e-06 19.1 0.1 243 283 2 44 1 52 0.88 # 32326 # 32529 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.314 1_39 - 348 DEAD PF00270.24 169 0.00024 13.2 0.0 1 1 5.5e-06 0.00045 12.4 0.0 7 39 159 191 156 246 0.80 # 28641 # 29684 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_73 - 268 DUF815 PF05673.8 250 0.00032 12.3 0.0 1 1 1.9e-05 0.00077 11.0 0.0 28 74 67 117 42 141 0.76 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 DUF815 PF05673.8 250 0.00055 11.5 0.0 1 1 1.3e-05 0.00055 11.5 0.0 44 71 7 34 2 40 0.80 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_48 - 47 DUF853 PF05872.7 504 0.00071 10.5 0.1 1 1 8.7e-06 0.00071 10.5 0.1 10 39 5 34 1 40 0.81 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_40 - 612 TrwB_AAD_bind PF10412.4 386 2.3e-22 71.7 0.0 1 1 9.9e-24 4.1e-22 70.9 0.0 165 380 331 548 294 552 0.87 # 29687 # 31522 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_48 - 47 TrwB_AAD_bind PF10412.4 386 9.4e-05 13.7 0.2 1 1 2.6e-06 0.00011 13.5 0.2 13 34 14 35 8 37 0.89 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_73 - 268 Sigma54_activ_2 PF14532.1 138 1.7e-06 20.7 0.1 1 1 6.5e-08 5.3e-06 19.2 0.1 2 50 75 125 74 228 0.85 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_40 - 612 T4SS-DNA_transf PF02534.9 469 8.6e-151 495.2 0.0 1 1 2.6e-152 1.1e-150 494.9 0.0 2 460 102 569 101 581 0.98 # 29687 # 31522 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.418 1_43 - 68 T4SS-DNA_transf PF02534.9 469 0.00028 12.1 0.2 1 1 6.9e-06 0.00028 12.1 0.2 328 372 8 51 1 59 0.87 # 32326 # 32529 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.314 1_64 - 207 ArgK PF03308.11 267 0.00048 11.5 1.0 1 2 1.2e-05 0.001 10.5 0.1 39 70 12 43 5 46 0.91 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_64 - 207 ArgK PF03308.11 267 0.00048 11.5 1.0 2 2 0.078 6.4 -2.0 0.1 119 147 73 101 60 111 0.65 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_13 - 221 GTP_EFTU PF00009.22 188 6.6e-07 21.5 0.0 1 1 1.3e-08 1e-06 20.9 0.0 15 138 15 152 6 209 0.61 # 8631 # 9293 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_80 - 338 TrkA_N PF02254.13 116 0.00035 13.2 0.0 1 1 1.3e-05 0.001 11.7 0.0 73 114 160 200 148 201 0.81 # 56524 # 57537 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_80 - 338 AlaDh_PNT_C PF01262.16 168 4.9e-05 15.6 0.2 1 1 1.7e-06 0.00014 14.1 0.1 15 67 146 199 142 239 0.87 # 56524 # 57537 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_64 - 207 AAA_24 PF13479.1 213 2.6e-06 19.7 0.6 1 1 6.2e-08 5.1e-06 18.8 0.2 11 88 10 95 2 99 0.78 # 44674 # 45294 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_73 - 268 UvrD-helicase PF00580.16 315 0.0004 12.3 0.1 1 1 1.9e-05 0.00079 11.3 0.1 8 41 91 124 85 131 0.85 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_48 - 47 UvrD-helicase PF00580.16 315 0.00056 11.8 0.1 1 1 1.5e-05 0.00063 11.7 0.1 4 33 7 36 4 39 0.88 # 34796 # 34936 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_28 - 164 TIGR00922 TIGR00922 172 3.5e-08 25.8 0.0 1 2 0.08 6.5 -1.1 0.0 1 20 3 22 3 27 0.81 # 19032 # 19523 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 1_28 - 164 TIGR00922 TIGR00922 172 3.5e-08 25.8 0.0 2 2 2.1e-09 1.7e-07 23.5 0.0 56 110 52 106 32 117 0.88 # 19032 # 19523 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 1_73 - 268 NACHT PF05729.7 166 0.00073 11.8 2.5 1 2 1.8e-05 0.0015 10.9 0.2 3 28 99 124 97 158 0.81 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 NACHT PF05729.7 166 0.00073 11.8 2.5 2 2 0.03 2.5 0.4 0.0 85 127 162 197 139 202 0.75 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 AAA_25 PF13481.1 194 1.5e-05 17.1 1.2 1 1 1.1e-06 4.3e-05 15.6 0.4 35 59 98 122 91 134 0.83 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_39 - 348 AAA_25 PF13481.1 194 0.00016 13.8 0.0 1 1 5.9e-06 0.00024 13.1 0.0 19 52 153 186 138 218 0.87 # 28641 # 29684 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_73 - 268 AAA_28 PF13521.1 163 5.4e-07 22.3 1.2 1 1 2.1e-08 1.8e-06 20.7 0.6 1 27 98 124 98 163 0.81 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 1_73 - 268 AAA_5 PF07728.9 139 9.4e-05 14.8 0.3 1 1 2.8e-06 0.00023 13.5 0.3 1 20 98 117 98 243 0.93 # 50720 # 51523 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.623 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7c3dbc46-21b7-4929-ae1c-997c8811afeb # Target file: checkm_output/bins/pm1286/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1286/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7c3dbc46-21b7-4929-ae1c-997c8811afeb checkm_output/bins/pm1286/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:13 2020 # [ok]