# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_78 - 218 cobW PF02492.14 178 8.3e-07 21.9 0.0 1 1 1.1e-08 1.5e-06 21.1 0.0 10 177 11 172 3 173 0.76 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_89 - 344 Seryl_tRNA_N PF02403.17 108 0.001 12.4 11.6 1 3 0.0019 0.24 4.7 0.1 38 104 44 111 23 115 0.89 # 81847 # 82878 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_89 - 344 Seryl_tRNA_N PF02403.17 108 0.001 12.4 11.6 2 3 0.00065 0.086 6.2 0.1 27 59 142 174 130 196 0.84 # 81847 # 82878 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_89 - 344 Seryl_tRNA_N PF02403.17 108 0.001 12.4 11.6 3 3 0.00036 0.047 7.0 1.6 17 107 214 303 207 304 0.76 # 81847 # 82878 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_78 - 218 MipZ PF09140.6 261 7.2e-13 41.4 1.4 1 2 3.6e-10 4.7e-08 25.6 0.3 2 45 2 45 1 55 0.88 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_78 - 218 MipZ PF09140.6 261 7.2e-13 41.4 1.4 2 2 8.5e-07 0.00011 14.6 0.0 88 128 70 110 62 163 0.78 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_45 - 767 DUF87 PF01935.12 229 0.0008 12.5 0.0 1 1 2.2e-05 0.0029 10.7 0.0 16 40 130 153 115 163 0.84 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_36 - 1018 Septin PF00735.13 281 0.0015 10.8 0.2 1 2 0.08 10 -1.8 0.1 120 146 127 153 126 155 0.94 # 34145 # 37198 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.528 1_36 - 1018 Septin PF00735.13 281 0.0015 10.8 0.2 2 2 4.1e-05 0.0054 9.0 0.0 9 33 500 524 493 550 0.86 # 34145 # 37198 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.528 1_25 - 387 AAA_22 PF13401.1 131 2e-05 18.0 0.0 1 1 5.8e-07 3.8e-05 17.1 0.0 4 49 161 203 157 261 0.72 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 AAA_22 PF13401.1 131 0.00046 13.6 0.0 1 1 1.9e-05 0.0012 12.3 0.0 7 26 230 249 224 290 0.85 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 ATP_bind_1 PF03029.12 238 0.00037 13.4 0.0 1 1 4e-06 0.00053 12.8 0.0 1 30 166 195 166 202 0.86 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 AAA_17 PF13207.1 121 5.5e-05 17.3 0.0 1 1 1.2e-06 0.00015 15.9 0.0 1 23 229 251 229 329 0.76 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_78 - 218 ArsA_ATPase PF02374.10 305 4.5e-06 19.1 2.1 1 2 1.4e-07 1.8e-05 17.2 0.6 8 38 8 38 2 42 0.91 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_78 - 218 ArsA_ATPase PF02374.10 305 4.5e-06 19.1 2.1 2 2 0.011 1.4 1.1 0.0 175 204 149 178 121 211 0.70 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_11 - 520 T2SE PF00437.15 272 1.3e-42 138.8 0.0 1 2 0.0062 0.41 2.7 0.0 147 190 35 80 31 81 0.86 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_11 - 520 T2SE PF00437.15 272 1.3e-42 138.8 0.0 2 2 6e-43 3.9e-41 134.0 0.0 11 271 100 375 93 376 0.88 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 T2SE PF00437.15 272 1.6e-32 105.7 0.0 1 1 3.3e-34 2.1e-32 105.3 0.0 127 247 160 286 106 313 0.84 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 G-alpha PF00503.15 389 0.00022 13.2 0.0 1 1 3.2e-06 0.00041 12.3 0.0 58 114 227 283 219 401 0.80 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_78 - 218 VirC1 PF07015.6 231 2.5e-05 16.7 0.3 1 1 1.3e-06 0.00016 14.0 0.3 3 185 2 185 1 214 0.68 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_78 - 218 Fer4_NifH PF00142.13 273 3.1e-05 16.5 0.0 1 1 4.2e-07 5.5e-05 15.7 0.0 7 47 8 48 4 91 0.90 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_11 - 520 AAA_16 PF13191.1 185 0.00061 13.1 0.0 1 1 9.7e-06 0.0013 12.0 0.0 8 46 215 249 211 303 0.78 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 AAA_23 PF13476.1 202 5.5e-05 16.8 0.0 1 1 1.3e-06 8.8e-05 16.2 0.0 19 39 161 181 147 193 0.90 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 AAA_23 PF13476.1 202 0.00059 13.5 0.0 1 1 1.6e-05 0.001 12.7 0.0 19 37 227 245 210 252 0.84 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 AAA_18 PF13238.1 129 0.00024 14.7 0.0 1 1 1.3e-05 0.00083 13.0 0.0 2 41 165 210 165 243 0.78 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 AAA_18 PF13238.1 129 0.00072 13.2 0.0 1 1 2.2e-05 0.0014 12.2 0.0 1 17 230 246 230 339 0.88 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_89 - 344 AAA_13 PF13166.1 712 0.00071 11.3 17.5 1 2 9.8e-06 0.0013 10.5 2.7 364 468 68 174 23 186 0.52 # 81847 # 82878 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_89 - 344 AAA_13 PF13166.1 712 0.00071 11.3 17.5 2 2 0.00018 0.023 6.3 7.5 322 439 210 337 183 343 0.76 # 81847 # 82878 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_78 - 218 CbiA PF01656.18 195 3.1e-23 75.5 0.1 1 1 3.7e-25 4.9e-23 74.8 0.1 1 191 3 180 3 184 0.80 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_25 - 387 AAA_29 PF13555.1 62 1.5e-05 17.8 0.1 1 1 5.1e-07 3.3e-05 16.7 0.1 25 43 163 181 155 183 0.84 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 AAA_29 PF13555.1 62 4.4e-05 16.3 0.0 1 1 1.4e-06 9.3e-05 15.3 0.0 22 40 227 244 220 252 0.83 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 Sigma54_activat PF00158.21 168 0.0013 11.5 0.0 1 1 1.7e-05 0.0022 10.8 0.0 26 50 165 189 152 198 0.81 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_59 - 273 N6_Mtase PF02384.11 311 9.8e-11 34.5 0.0 1 1 1.2e-12 1.6e-10 33.8 0.0 23 121 132 236 122 261 0.83 # 59034 # 59852 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.509 1_36 - 1018 DUF258 PF03193.11 161 0.00079 11.9 0.0 1 1 1.1e-05 0.0014 11.1 0.0 35 59 495 519 488 534 0.80 # 34145 # 37198 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.528 1_45 - 767 TraG-D_C PF12696.2 128 7.6e-09 28.8 1.1 1 2 3.1e-10 4e-08 26.5 0.4 2 85 438 521 437 555 0.87 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_45 - 767 TraG-D_C PF12696.2 128 7.6e-09 28.8 1.1 2 2 0.062 8.1 -0.4 0.0 71 120 621 670 612 674 0.60 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_78 - 218 AAA_31 PF13614.1 157 7.1e-07 22.6 0.0 1 1 1.2e-08 1.6e-06 21.4 0.0 3 49 3 49 1 139 0.79 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_11 - 520 AAA_33 PF13671.1 143 0.0013 11.9 0.0 1 2 0.057 7.5 -0.3 0.0 26 85 49 120 36 135 0.71 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_11 - 520 AAA_33 PF13671.1 143 0.0013 11.9 0.0 2 2 6.9e-05 0.009 9.2 0.0 2 19 230 247 230 274 0.89 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_11 - 520 AAA_30 PF13604.1 196 0.00053 12.9 0.0 1 1 6.9e-06 0.00091 12.1 0.0 4 43 213 252 210 277 0.85 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 FtsK_SpoIIIE PF01580.13 205 4e-05 16.4 0.0 1 1 8.6e-07 5.6e-05 15.9 0.0 40 62 163 185 124 272 0.84 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 FtsK_SpoIIIE PF01580.13 205 0.0002 14.2 0.0 1 1 5.9e-06 0.00039 13.2 0.0 30 85 217 273 204 291 0.79 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 ABC_tran PF00005.22 137 3.4e-05 17.5 0.0 1 1 9.9e-07 6.5e-05 16.6 0.0 15 39 165 189 157 220 0.87 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_11 - 520 ABC_tran PF00005.22 137 0.00019 15.0 0.2 1 1 6.9e-06 0.00045 13.8 0.2 13 38 229 254 224 462 0.93 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_11 - 520 DAP3 PF10236.4 309 0.00086 11.5 0.0 1 1 1.3e-05 0.0017 10.5 0.0 21 42 225 246 215 253 0.87 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_11 - 520 AAA_19 PF13245.1 76 0.00029 13.9 0.0 1 1 4.9e-06 0.00065 12.8 0.0 10 43 228 258 218 265 0.73 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_36 - 1018 AAA_10 PF12846.2 304 4.2e-29 95.2 0.0 1 1 2.8e-30 7.3e-29 94.4 0.0 8 303 502 898 498 899 0.88 # 34145 # 37198 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.528 1_45 - 767 AAA_10 PF12846.2 304 2.7e-08 26.8 0.1 1 1 2.3e-09 6e-08 25.7 0.1 2 292 137 506 136 517 0.76 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_11 - 520 AAA_10 PF12846.2 304 4.7e-05 16.2 0.0 1 1 3.1e-06 8e-05 15.4 0.0 4 47 230 277 228 341 0.68 # 8736 # 10295 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.520 1_25 - 387 AAA_10 PF12846.2 304 0.001 11.8 0.0 1 1 6.6e-05 0.0017 11.0 0.0 3 28 163 188 161 203 0.78 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_78 - 218 AAA_10 PF12846.2 304 0.0011 11.7 0.0 1 1 6.5e-05 0.0017 11.1 0.0 11 43 11 45 9 82 0.87 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_45 - 767 TrwB_AAD_bind PF10412.4 386 5.2e-06 18.5 2.4 1 3 0.00027 0.035 5.9 0.0 14 35 135 156 126 171 0.82 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_45 - 767 TrwB_AAD_bind PF10412.4 386 5.2e-06 18.5 2.4 2 3 7.4e-06 0.00097 11.0 0.2 260 373 452 567 440 574 0.71 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_45 - 767 TrwB_AAD_bind PF10412.4 386 5.2e-06 18.5 2.4 3 3 0.058 7.6 -1.8 0.1 73 115 643 689 642 701 0.79 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_45 - 767 T4SS-DNA_transf PF02534.9 469 0.00045 12.1 0.3 1 2 0.00053 0.07 4.9 0.0 35 88 125 184 103 277 0.78 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_45 - 767 T4SS-DNA_transf PF02534.9 469 0.00045 12.1 0.3 2 2 0.00051 0.067 4.9 0.2 322 388 454 520 378 536 0.89 # 46489 # 48789 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_4 - 180 TIGR00922 TIGR00922 172 2.6e-06 20.3 0.0 1 1 2.4e-08 3.1e-06 20.1 0.0 53 135 69 151 26 164 0.86 # 2209 # 2748 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.428 1_25 - 387 AAA_25 PF13481.1 194 2.4e-05 17.1 0.0 1 1 7e-07 4.6e-05 16.2 0.0 27 57 155 185 137 217 0.87 # 22041 # 23201 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.543 1_78 - 218 AAA_25 PF13481.1 194 4.4e-05 16.2 0.1 1 1 1.4e-06 9.3e-05 15.2 0.1 41 80 9 52 3 60 0.74 # 74181 # 74834 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2ee6b9a6-a5b6-43c2-a803-22e2426e3762 # Target file: checkm_output/bins/pm1283/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1283/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2ee6b9a6-a5b6-43c2-a803-22e2426e3762 checkm_output/bins/pm1283/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:11 2020 # [ok]