# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 145 SSB PF00436.20 104 6.4e-32 102.3 0.2 1 1 8.4e-34 7.4e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 47999 # 48433 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_41 - 388 DUF87 PF01935.12 229 8.2e-05 15.2 0.0 1 1 1.8e-06 0.00016 14.2 0.0 28 45 157 174 155 188 0.89 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 AAA_22 PF13401.1 131 3.7e-06 19.9 0.0 1 1 1.9e-07 8.5e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_28 - 1017 AAA_22 PF13401.1 131 0.00033 13.5 0.0 1 1 2.4e-05 0.001 11.9 0.0 8 69 492 557 486 594 0.67 # 27855 # 30905 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_41 - 388 ATP_bind_1 PF03029.12 238 0.00072 11.8 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 25 157 181 157 191 0.84 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_28 - 1017 AAA_17 PF13207.1 121 4e-05 17.2 0.0 1 1 2.9e-06 0.00026 14.6 0.0 3 28 492 523 492 587 0.67 # 27855 # 30905 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_41 - 388 Miro PF08477.8 119 0.00083 12.6 0.0 1 1 2.1e-05 0.0019 11.5 0.0 4 28 157 186 156 220 0.72 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 MobB PF03205.9 140 0.00047 12.6 0.0 1 1 1e-05 0.00091 11.7 0.0 4 25 156 177 154 190 0.85 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 T2SE PF00437.15 272 1.9e-23 75.4 0.0 1 1 3.4e-25 3e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 SMC_N PF02463.14 220 0.00089 11.2 0.0 1 1 1.8e-05 0.0016 10.4 0.0 25 50 153 178 146 195 0.81 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 AAA_16 PF13191.1 185 0.00056 12.6 0.0 1 1 1.2e-05 0.0011 11.7 0.0 25 50 153 178 141 211 0.84 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 AAA_23 PF13476.1 202 2.1e-06 20.9 0.8 1 1 3.9e-08 3.4e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_28 - 1017 AAA_18 PF13238.1 129 4.8e-05 16.4 0.1 1 1 4.2e-06 0.00037 13.6 0.0 2 19 492 509 492 562 0.79 # 27855 # 30905 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_41 - 388 KaiC PF06745.8 227 0.00068 11.5 0.0 1 1 1.4e-05 0.0012 10.7 0.0 11 59 144 191 137 201 0.76 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 AAA_29 PF13555.1 62 7.5e-06 18.2 0.1 1 1 2e-07 1.8e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.6 0.1 1 2 0.00093 0.081 5.5 0.0 26 45 84 103 77 114 0.83 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.6 0.1 2 2 0.00012 0.01 8.4 0.0 21 54 242 274 230 278 0.91 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_9 - 696 TraG-D_C PF12696.2 128 0.00012 14.7 0.1 1 1 2.4e-06 0.00021 13.9 0.1 3 94 437 524 435 556 0.78 # 5046 # 7133 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_41 - 388 FtsK_SpoIIIE PF01580.13 205 9.3e-05 14.7 0.0 1 1 2.1e-06 0.00018 13.7 0.0 41 59 155 173 135 184 0.85 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 ABC_tran PF00005.22 137 0.0001 15.4 0.0 1 1 2.2e-06 0.00019 14.5 0.0 15 33 156 174 147 217 0.82 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_28 - 1017 AAA_19 PF13245.1 76 0.00033 13.2 0.0 1 1 1.2e-05 0.001 11.6 0.0 14 32 492 509 481 523 0.86 # 27855 # 30905 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_28 - 1017 AAA_10 PF12846.2 304 6.6e-42 136.6 0.0 1 1 4.6e-43 1.4e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 27855 # 30905 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_9 - 696 AAA_10 PF12846.2 304 5.5e-10 31.8 0.0 1 1 2.8e-11 8.2e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 5046 # 7133 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_41 - 388 AAA_10 PF12846.2 304 1.1e-06 21.0 0.0 1 1 2.1e-07 6.2e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_28 - 1017 DUF2075 PF09848.4 352 0.00032 12.4 0.0 1 1 1e-05 0.00092 10.9 0.0 5 22 492 509 489 526 0.84 # 27855 # 30905 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_60 - 287 Methyltransf_27 PF13708.1 194 5.4e-69 224.3 0.0 1 1 1e-70 9e-69 223.6 0.0 2 194 89 282 88 282 0.98 # 52102 # 52962 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_9 - 696 TrwB_AAD_bind PF10412.4 386 1.6e-06 19.6 0.9 1 3 1.7e-05 0.0015 9.8 0.0 16 36 134 154 125 158 0.88 # 5046 # 7133 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_9 - 696 TrwB_AAD_bind PF10412.4 386 1.6e-06 19.6 0.9 2 3 9.3e-05 0.0082 7.4 0.1 93 140 235 281 229 303 0.80 # 5046 # 7133 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_9 - 696 TrwB_AAD_bind PF10412.4 386 1.6e-06 19.6 0.9 3 3 0.083 7.3 -2.3 0.0 293 323 482 512 405 546 0.58 # 5046 # 7133 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_41 - 388 GTP_EFTU PF00009.22 188 0.00096 11.3 0.0 1 1 2e-05 0.0017 10.5 0.0 8 34 157 183 155 195 0.87 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 RNA_helicase PF00910.17 107 0.00097 12.1 0.0 1 1 2.5e-05 0.0022 10.9 0.0 3 26 157 180 156 197 0.81 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 NACHT PF05729.7 166 0.0003 13.2 0.0 1 1 6.6e-06 0.00058 12.3 0.0 4 29 156 181 154 188 0.83 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_41 - 388 AAA_25 PF13481.1 194 4.9e-06 18.8 0.0 1 1 1.1e-07 9.9e-06 17.8 0.0 25 53 144 172 122 178 0.89 # 41073 # 42236 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/469e4021-29b9-4348-b020-9852ca5e35d7 # Target file: checkm_output/bins/pm1279/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1279/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/469e4021-29b9-4348-b020-9852ca5e35d7 checkm_output/bins/pm1279/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:10 2020 # [ok]