# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_6 - 584 Mg_chelatase PF01078.16 207 0.00026 12.4 0.3 1 2 0.021 1.3 0.3 0.0 25 62 11 48 9 65 0.76 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 Mg_chelatase PF01078.16 207 0.00026 12.4 0.3 2 2 6.3e-05 0.0039 8.6 0.1 22 56 326 361 317 392 0.75 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 cobW PF02492.14 178 1.6e-06 19.9 0.0 1 1 4.6e-08 2.9e-06 19.1 0.0 3 44 161 201 159 257 0.79 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 Parvo_NS1 PF01057.12 272 0.00054 11.1 0.0 1 1 1.4e-05 0.0009 10.4 0.0 104 138 148 182 140 188 0.90 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 Thymidylate_kin PF02223.12 186 1.3e-06 20.1 0.1 1 2 0.00041 0.026 6.1 0.0 3 47 15 59 13 73 0.86 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 Thymidylate_kin PF02223.12 186 1.3e-06 20.1 0.1 2 2 1.4e-05 0.00088 10.9 0.0 5 54 336 384 333 402 0.85 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_23 - 1079 Torsin PF06309.6 127 3.4e-05 16.0 0.0 1 1 1.6e-06 9.9e-05 14.5 0.0 19 85 460 526 452 537 0.82 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 584 IstB_IS21 PF01695.12 178 1.1e-11 36.7 0.1 1 2 2.8e-06 8.7e-05 14.2 0.0 50 84 11 45 2 50 0.90 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 IstB_IS21 PF01695.12 178 1.1e-11 36.7 0.1 2 2 1.1e-07 3.6e-06 18.8 0.0 49 83 329 363 311 384 0.85 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 IstB_IS21 PF01695.12 178 1.8e-05 16.5 0.0 1 1 9e-07 2.8e-05 15.8 0.0 44 73 155 184 127 200 0.82 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 MipZ PF09140.6 261 2.5e-08 25.5 3.1 1 2 5.9e-05 0.0037 8.6 0.0 8 39 15 46 10 63 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 MipZ PF09140.6 261 2.5e-08 25.5 3.1 2 2 1.2e-06 7.6e-05 14.1 0.6 6 39 332 365 327 464 0.62 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 YhjQ PF06564.7 244 6.4e-10 31.0 0.1 1 3 1.6e-07 9.9e-06 17.3 0.0 10 52 16 58 11 155 0.58 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 YhjQ PF06564.7 244 6.4e-10 31.0 0.1 2 3 2.4e-05 0.0015 10.1 0.0 10 49 335 374 328 401 0.84 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 YhjQ PF06564.7 244 6.4e-10 31.0 0.1 3 3 0.094 5.9 -1.6 0.0 96 128 469 501 425 517 0.66 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 3HCDH_N PF02737.13 180 0.00041 12.3 0.2 1 1 2.3e-05 0.0015 10.5 0.0 5 35 338 368 336 409 0.75 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_23 - 1079 UvrD_C_2 PF13538.1 104 1.6e-16 52.7 0.1 1 1 1e-17 6.6e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 332 AAA_2 PF07724.9 171 3.8e-06 19.1 0.0 1 1 1.1e-07 7e-06 18.3 0.0 3 54 158 204 156 213 0.89 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 510 DUF87 PF01935.12 229 6.9e-08 24.8 0.0 1 1 3.4e-09 1.1e-07 24.2 0.0 10 68 116 170 109 262 0.85 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 332 DUF87 PF01935.12 229 1.7e-06 20.2 0.0 1 1 9.7e-08 3e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 NB-ARC PF00931.17 287 3.7e-07 21.5 0.1 1 2 0.0013 0.081 3.9 0.0 21 36 10 25 3 37 0.86 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 NB-ARC PF00931.17 287 3.7e-07 21.5 0.1 2 2 5e-07 3.2e-05 15.1 0.0 17 42 325 350 314 399 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 AAA_22 PF13401.1 131 1.9e-07 23.5 0.0 1 1 2.8e-08 4.4e-07 22.4 0.0 3 45 157 193 153 238 0.75 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 AAA_22 PF13401.1 131 1e-05 18.0 0.1 1 2 0.039 0.62 2.5 0.0 7 65 11 64 8 109 0.69 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_22 PF13401.1 131 1e-05 18.0 0.1 2 2 5.3e-05 0.00083 11.8 0.1 3 73 326 392 323 505 0.74 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_13 - 867 AAA_22 PF13401.1 131 5.8e-05 15.5 0.1 1 1 9.2e-05 0.0014 11.0 0.0 5 28 492 515 489 572 0.87 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_23 - 1079 AAA_22 PF13401.1 131 0.00039 12.8 0.2 1 1 0.00029 0.0045 9.4 0.2 4 125 494 598 488 603 0.81 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 584 ATP_bind_1 PF03029.12 238 1.7e-05 16.7 3.0 1 3 0.00099 0.062 5.0 0.1 2 37 14 49 13 53 0.90 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 ATP_bind_1 PF03029.12 238 1.7e-05 16.7 3.0 2 3 0.079 5 -1.2 0.0 197 234 185 221 168 224 0.81 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 ATP_bind_1 PF03029.12 238 1.7e-05 16.7 3.0 3 3 1.7e-05 0.0011 10.8 0.2 2 37 333 368 332 371 0.95 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 SRP54 PF00448.17 196 7e-10 30.9 2.5 1 2 2.1e-05 0.0013 10.4 0.0 2 38 9 45 8 82 0.93 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 SRP54 PF00448.17 196 7e-10 30.9 2.5 2 2 4.5e-08 2.8e-06 19.1 0.0 3 38 329 364 327 401 0.92 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_17 PF13207.1 121 1.1e-05 18.5 0.0 1 2 0.028 0.44 3.7 0.0 3 20 12 29 11 148 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_17 PF13207.1 121 1.1e-05 18.5 0.0 2 2 6.5e-05 0.001 12.2 0.0 2 32 330 362 329 457 0.58 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_13 - 867 AAA_17 PF13207.1 121 0.00016 14.7 1.3 1 1 0.00028 0.0044 10.1 0.0 3 21 495 513 494 574 0.79 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_20 - 332 AAA_17 PF13207.1 121 0.00027 14.1 0.1 1 1 4e-05 0.00063 12.9 0.1 2 40 161 195 160 226 0.75 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 510 AAA_17 PF13207.1 121 0.00035 13.7 0.1 1 1 9e-05 0.0014 11.7 0.0 4 42 131 191 129 260 0.58 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 584 MobB PF03205.9 140 1.4e-06 20.3 0.1 1 2 0.00038 0.012 7.6 0.0 4 38 12 45 9 89 0.79 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 MobB PF03205.9 140 1.4e-06 20.3 0.1 2 2 5e-05 0.0016 10.4 0.0 3 49 330 376 328 414 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 MobB PF03205.9 140 5.6e-06 18.4 1.9 1 1 3e-07 9.4e-06 17.6 0.3 2 39 160 196 159 201 0.83 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 ArsA_ATPase PF02374.10 305 3.1e-131 429.1 0.0 1 3 4.1e-91 1.3e-89 292.4 0.0 2 300 9 292 8 296 0.97 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 ArsA_ATPase PF02374.10 305 3.1e-131 429.1 0.0 2 3 4.7e-35 1.5e-33 108.3 0.1 3 161 329 475 327 485 0.92 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 ArsA_ATPase PF02374.10 305 3.1e-131 429.1 0.0 3 3 1.3e-09 4e-08 24.8 0.0 200 299 483 581 474 583 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_3 - 92 ArsA_ATPase PF02374.10 305 2.1e-09 29.0 0.0 1 1 7.2e-11 2.3e-09 28.9 0.0 211 300 2 90 1 91 0.94 # 972 # 1247 # 1 # ID=2_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_23 - 1079 PhoH PF02562.11 205 2e-09 29.2 4.8 1 2 1.4e-06 3e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_23 - 1079 PhoH PF02562.11 205 2e-09 29.2 4.8 2 2 4.5e-06 9.5e-05 13.9 0.1 120 162 562 605 553 635 0.82 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 584 PhoH PF02562.11 205 1.2e-08 26.6 0.1 1 2 7.7e-05 0.0016 9.9 0.0 21 63 10 52 2 106 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 PhoH PF02562.11 205 1.2e-08 26.6 0.1 2 2 4.4e-06 9.3e-05 14.0 0.0 12 55 318 363 308 383 0.78 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 PhoH PF02562.11 205 0.00018 13.0 0.0 1 1 1.6e-05 0.00033 12.2 0.0 14 45 153 184 143 219 0.80 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 AAA_7 PF12775.2 272 6.4e-05 14.3 0.0 1 1 2.4e-06 0.00015 13.1 0.0 25 64 150 189 139 208 0.86 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 T2SE PF00437.15 272 4.9e-52 168.7 0.1 1 1 2.7e-53 5.7e-52 168.5 0.1 3 271 10 311 8 312 0.93 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 T2SE PF00437.15 272 0.00012 13.3 0.0 1 2 0.06 1.3 0.1 0.0 131 162 11 42 2 56 0.79 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 T2SE PF00437.15 272 0.00012 13.3 0.0 2 2 4.4e-05 0.00093 10.3 0.0 123 155 324 354 182 372 0.72 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_24 - 510 T2SE PF00437.15 272 0.00055 11.1 0.1 1 1 4.6e-05 0.00097 10.3 0.1 130 149 128 147 103 160 0.84 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 332 Zeta_toxin PF06414.7 201 1e-06 20.2 0.0 1 1 2.7e-08 1.7e-06 19.5 0.0 12 51 154 193 145 203 0.86 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 VirC1 PF07015.6 231 6.6e-05 14.3 0.8 1 2 0.001 0.064 4.5 0.0 9 40 15 46 10 60 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 VirC1 PF07015.6 231 6.6e-05 14.3 0.8 2 2 9.6e-05 0.0061 7.9 0.2 10 44 335 369 329 379 0.88 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 Fer4_NifH PF00142.13 273 8.6e-14 43.5 0.1 1 2 1.5e-09 9.3e-08 23.8 0.0 5 59 13 66 10 90 0.80 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 Fer4_NifH PF00142.13 273 8.6e-14 43.5 0.1 2 2 2.2e-07 1.4e-05 16.6 0.0 3 62 330 388 329 406 0.77 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 Arch_ATPase PF01637.13 234 5.9e-06 18.3 0.0 1 1 3.6e-07 1.1e-05 17.4 0.0 15 68 155 205 149 217 0.87 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 Arch_ATPase PF01637.13 234 0.00047 12.1 0.0 1 2 0.027 0.86 1.4 0.0 22 57 10 45 2 146 0.67 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 Arch_ATPase PF01637.13 234 0.00047 12.1 0.0 2 2 0.00023 0.0071 8.3 0.0 15 87 322 407 313 469 0.58 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_16 PF13191.1 185 9.1e-09 27.8 1.3 1 2 5.4e-05 0.0011 11.2 0.3 23 105 7 83 3 262 0.79 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_16 PF13191.1 185 9.1e-09 27.8 1.3 2 2 6.7e-06 0.00014 14.1 0.0 17 83 320 385 312 461 0.59 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 AAA_16 PF13191.1 185 4.6e-07 22.2 0.0 1 1 5.5e-08 1.1e-06 20.9 0.0 24 58 158 192 149 273 0.83 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 867 AAA_16 PF13191.1 185 0.00054 12.2 0.1 1 1 0.00019 0.0041 9.4 0.1 25 47 492 514 481 723 0.84 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_6 - 584 AAA_23 PF13476.1 202 0.00011 14.9 0.1 1 2 0.09 1.9 1.0 0.1 24 37 13 26 11 43 0.81 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_23 PF13476.1 202 0.00011 14.9 0.1 2 2 6.9e-05 0.0014 11.2 0.0 18 47 326 355 312 454 0.73 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 AAA_23 PF13476.1 202 0.00029 13.5 0.0 1 1 2.2e-05 0.00045 12.8 0.0 19 39 158 178 105 184 0.91 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 867 AAA_23 PF13476.1 202 0.0014 11.2 4.1 1 2 0.071 1.5 1.3 0.3 137 177 132 192 17 239 0.62 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 867 AAA_23 PF13476.1 202 0.0014 11.2 4.1 2 2 0.00014 0.0029 10.2 0.0 22 39 494 511 464 522 0.84 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_20 - 332 AAA_18 PF13238.1 129 3e-06 19.8 0.0 1 1 3e-07 6.2e-06 18.8 0.0 1 29 161 194 161 212 0.77 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 510 AAA_18 PF13238.1 129 8.1e-05 15.2 0.0 1 1 7.8e-06 0.00016 14.2 0.0 3 21 131 149 130 238 0.78 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 584 AAA_18 PF13238.1 129 0.00067 12.2 2.2 1 2 0.015 0.32 3.6 0.1 2 21 12 31 11 63 0.78 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_18 PF13238.1 129 0.00067 12.2 2.2 2 2 0.0007 0.015 7.9 0.3 1 23 330 357 330 450 0.81 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 CbiA PF01656.18 195 1.3e-29 95.2 0.0 1 2 3.6e-16 1.1e-14 46.5 0.0 4 167 13 246 10 265 0.72 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 CbiA PF01656.18 195 1.3e-29 95.2 0.0 2 2 3.5e-16 1.1e-14 46.5 0.0 4 157 332 528 329 534 0.75 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_27 - 239 CbiA PF01656.18 195 1.8e-06 19.8 0.7 1 2 0.00082 0.026 6.1 0.1 1 19 3 21 3 24 0.89 # 21777 # 22493 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_27 - 239 CbiA PF01656.18 195 1.8e-06 19.8 0.7 2 2 1.3e-05 0.00041 12.0 0.0 110 165 89 142 33 168 0.77 # 21777 # 22493 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 2_6 - 584 KaiC PF06745.8 227 7e-05 14.2 0.2 1 2 0.0013 0.04 5.2 0.0 24 60 13 48 8 113 0.77 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 KaiC PF06745.8 227 7e-05 14.2 0.2 2 2 0.00057 0.018 6.4 0.1 21 61 329 371 322 495 0.67 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 KaiC PF06745.8 227 0.00013 13.3 0.0 1 1 7.7e-06 0.00024 12.5 0.0 16 53 155 190 148 226 0.79 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 510 AAA_14 PF13173.1 128 7.8e-06 18.1 0.0 1 2 4.3e-06 0.00014 14.1 0.0 6 89 130 213 125 234 0.76 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_24 - 510 AAA_14 PF13173.1 128 7.8e-06 18.1 0.0 2 2 0.043 1.4 1.1 0.0 53 81 340 372 300 391 0.57 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 1 2 0.0054 0.17 4.1 0.0 63 94 134 163 96 165 0.67 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 AAA_14 PF13173.1 128 0.00018 13.7 0.1 2 2 6.4e-05 0.002 10.3 0.0 2 34 158 190 157 212 0.80 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 GvpD PF07088.6 484 8e-06 16.6 0.0 1 1 1.9e-07 1.2e-05 16.0 0.0 10 85 158 238 150 263 0.73 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 AAA_29 PF13555.1 62 1.9e-05 16.4 0.9 1 2 0.003 0.19 3.6 0.0 26 40 11 25 5 33 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_29 PF13555.1 62 1.9e-05 16.4 0.9 2 2 2e-05 0.0013 10.6 0.1 23 47 328 351 320 361 0.79 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 CobA_CobO_BtuR PF02572.10 172 0.01 7.7 4.6 1 3 0.0061 0.38 2.6 0.0 8 37 12 42 6 43 0.85 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 CobA_CobO_BtuR PF02572.10 172 0.01 7.7 4.6 2 3 0.021 1.3 0.8 0.0 125 155 194 224 184 231 0.86 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 CobA_CobO_BtuR PF02572.10 172 0.01 7.7 4.6 3 3 0.0041 0.26 3.1 0.7 2 36 326 360 325 362 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_23 - 1079 AAA PF00004.24 132 2.1e-06 20.3 0.9 1 1 2.6e-07 8.1e-06 18.3 0.1 4 111 500 600 497 612 0.73 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 584 AAA PF00004.24 132 3.3e-06 19.6 1.5 1 2 0.0062 0.2 4.2 0.0 2 22 12 32 11 85 0.76 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA PF00004.24 132 3.3e-06 19.6 1.5 2 2 6.2e-06 0.00019 13.9 0.5 1 28 330 357 330 552 0.85 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 Sigma54_activat PF00158.21 168 5.7e-06 18.1 0.0 1 1 3.3e-07 1e-05 17.3 0.0 14 54 150 190 138 208 0.82 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 1079 Sigma54_activat PF00158.21 168 0.00011 14.0 0.4 1 1 9.6e-06 0.0003 12.5 0.4 8 130 480 600 473 606 0.79 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 332 MMR_HSR1 PF01926.18 116 0.00028 13.1 0.0 1 1 7.3e-06 0.00046 12.4 0.0 2 41 161 205 160 310 0.84 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 DUF258 PF03193.11 161 3.1e-05 15.4 0.0 1 2 0.0036 0.11 3.9 0.0 37 52 10 25 2 123 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 DUF258 PF03193.11 161 3.1e-05 15.4 0.0 2 2 8.7e-05 0.0027 9.1 0.0 35 59 327 351 308 395 0.80 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 DUF258 PF03193.11 161 7.6e-05 14.2 0.0 1 1 4.4e-06 0.00014 13.3 0.0 29 61 151 184 129 220 0.82 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 510 TraG-D_C PF12696.2 128 8.6e-22 69.7 0.0 1 1 2.2e-23 1.4e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 584 AAA_31 PF13614.1 157 3.7e-13 42.0 0.1 1 2 8.2e-09 5.1e-07 22.0 0.0 4 128 11 146 9 155 0.79 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_31 PF13614.1 157 3.7e-13 42.0 0.1 2 2 1.6e-06 0.0001 14.5 0.0 3 45 330 371 328 419 0.74 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 NTPase_1 PF03266.10 168 5.8e-06 18.4 2.0 1 3 0.0016 0.1 4.6 0.1 2 29 11 38 10 52 0.82 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 NTPase_1 PF03266.10 168 5.8e-06 18.4 2.0 2 3 0.05 3.2 -0.3 0.0 107 148 179 219 174 250 0.69 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 NTPase_1 PF03266.10 168 5.8e-06 18.4 2.0 3 3 1.4e-05 0.00091 11.2 0.2 2 30 330 358 329 362 0.93 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_33 PF13671.1 143 0.00016 13.9 0.6 1 1 2.9e-05 0.00093 11.4 0.2 1 40 329 379 329 475 0.68 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 AAA_33 PF13671.1 143 0.00023 13.3 0.0 1 1 1.2e-05 0.00038 12.6 0.0 2 26 161 188 160 256 0.81 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 KTI12 PF08433.5 270 0.00033 12.1 0.1 1 2 0.034 2.2 -0.4 0.0 5 38 12 45 10 56 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 KTI12 PF08433.5 270 0.00033 12.1 0.1 2 2 3.2e-05 0.002 9.5 0.0 3 38 329 364 328 386 0.88 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_23 - 1079 AAA_30 PF13604.1 196 1.1e-53 173.9 7.6 1 1 2.3e-54 4.9e-53 171.9 6.4 1 192 477 660 477 663 0.97 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 584 AAA_30 PF13604.1 196 9.8e-07 20.8 0.8 1 2 0.016 0.34 2.7 0.0 22 54 12 44 3 83 0.86 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_30 PF13604.1 196 9.8e-07 20.8 0.8 2 2 1.9e-06 4e-05 15.5 0.1 10 54 319 363 316 381 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 AAA_30 PF13604.1 196 1.7e-05 16.7 0.0 1 2 7.2e-05 0.0015 10.3 0.1 11 51 151 190 147 198 0.80 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 AAA_30 PF13604.1 196 1.7e-05 16.7 0.0 2 2 0.0059 0.12 4.1 0.0 121 178 204 258 191 272 0.77 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 FtsK_SpoIIIE PF01580.13 205 5e-07 21.6 0.0 1 1 6.2e-08 9.7e-07 20.7 0.0 38 64 158 184 139 202 0.84 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 867 FtsK_SpoIIIE PF01580.13 205 8e-06 17.7 0.0 1 1 1.1e-06 1.7e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_6 - 584 FtsK_SpoIIIE PF01580.13 205 0.00037 12.3 0.0 1 1 5.6e-05 0.00088 11.0 0.0 23 79 310 366 296 437 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_24 - 510 FtsK_SpoIIIE PF01580.13 205 0.00041 12.1 0.0 1 1 4.5e-05 0.00071 11.3 0.0 39 59 124 147 95 153 0.78 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_20 - 332 ABC_tran PF00005.22 137 1.1e-06 21.2 0.0 1 1 9.4e-08 2e-06 20.4 0.0 6 45 153 192 150 216 0.85 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 ABC_tran PF00005.22 137 8.3e-06 18.4 0.0 1 2 0.015 0.32 3.6 0.0 14 111 11 111 8 119 0.77 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 ABC_tran PF00005.22 137 8.3e-06 18.4 0.0 2 2 6.8e-05 0.0014 11.2 0.0 13 50 329 366 321 458 0.77 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_13 - 867 ABC_tran PF00005.22 137 0.00041 12.9 0.0 1 1 6.5e-05 0.0014 11.2 0.0 14 38 494 518 481 561 0.84 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_20 - 332 ATP-synt_ab PF00006.20 215 0.00036 12.3 0.0 1 1 8.7e-06 0.00055 11.7 0.0 16 62 159 205 151 256 0.87 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 RuvB_N PF05496.7 234 5.4e-08 24.4 0.1 1 2 0.016 1 0.5 0.0 52 72 10 30 5 49 0.76 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 RuvB_N PF05496.7 234 5.4e-08 24.4 0.1 2 2 1.1e-08 7e-07 20.7 0.0 49 119 326 400 300 407 0.80 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_19 PF13245.1 76 1.6e-09 29.7 1.9 1 2 1.1e-05 0.00023 13.2 0.0 12 50 11 44 4 50 0.87 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_19 PF13245.1 76 1.6e-09 29.7 1.9 2 2 8e-06 0.00017 13.6 0.2 4 49 320 362 318 377 0.80 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 AAA_19 PF13245.1 76 0.00041 12.4 0.1 1 1 4.3e-05 0.00091 11.3 0.1 5 48 153 191 149 222 0.79 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 1079 AAA_19 PF13245.1 76 0.0015 10.6 3.7 1 2 0.00084 0.018 7.2 0.2 2 75 485 551 484 552 0.75 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_23 - 1079 AAA_19 PF13245.1 76 0.0015 10.6 3.7 2 2 0.041 0.86 1.7 0.0 17 32 706 721 705 731 0.82 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_23 - 1079 Helicase_RecD PF05127.9 177 1.2e-05 17.2 4.8 1 2 0.00059 0.037 5.9 0.1 122 146 498 522 481 539 0.76 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_23 - 1079 Helicase_RecD PF05127.9 177 1.2e-05 17.2 4.8 2 2 8.1e-06 0.00051 12.0 0.1 75 114 548 585 529 653 0.69 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_13 - 867 AAA_10 PF12846.2 304 5e-35 113.6 0.1 1 1 1e-35 1.6e-34 111.9 0.0 2 292 492 772 491 780 0.85 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_24 - 510 AAA_10 PF12846.2 304 3.4e-07 22.2 0.1 1 2 2.8e-05 0.00043 12.0 0.1 3 41 128 166 126 177 0.92 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_24 - 510 AAA_10 PF12846.2 304 3.4e-07 22.2 0.1 2 2 0.00045 0.0071 8.0 0.0 214 286 339 414 307 431 0.75 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 584 AAA_10 PF12846.2 304 1.3e-05 17.0 1.0 1 2 0.00041 0.0065 8.1 0.0 3 56 10 65 8 118 0.81 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_10 PF12846.2 304 1.3e-05 17.0 1.0 2 2 0.00085 0.013 7.1 0.1 3 43 329 371 327 418 0.79 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 AAA_10 PF12846.2 304 0.00017 13.3 0.0 1 1 1.7e-05 0.00027 12.7 0.0 3 27 160 184 158 232 0.82 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 adh_short_C2 PF13561.1 241 0.0002 13.4 0.0 1 2 0.00098 0.062 5.3 0.0 1 32 18 60 17 131 0.65 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 adh_short_C2 PF13561.1 241 0.0002 13.4 0.0 2 2 0.00056 0.035 6.0 0.0 5 45 340 381 336 463 0.73 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 ResIII PF04851.10 184 3.9e-06 19.0 0.0 1 1 2e-07 6.1e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 ResIII PF04851.10 184 0.00038 12.5 0.0 1 2 0.003 0.093 4.8 0.0 32 56 15 42 4 67 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 ResIII PF04851.10 184 0.00038 12.5 0.0 2 2 0.0023 0.074 5.1 0.0 23 50 325 352 275 366 0.73 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_23 - 1079 Viral_helicase1 PF01443.13 234 4.2e-15 48.1 5.4 1 2 2.3e-08 1.4e-06 20.2 0.0 3 104 499 605 497 654 0.74 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_23 - 1079 Viral_helicase1 PF01443.13 234 4.2e-15 48.1 5.4 2 2 3e-11 1.9e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_20 - 332 DUF2075 PF09848.4 352 5.9e-05 14.3 0.0 1 1 1.4e-06 8.6e-05 13.8 0.0 1 32 158 187 158 212 0.76 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 DEAD PF00270.24 169 2.2e-06 19.5 0.0 1 1 6.7e-08 4.2e-06 18.6 0.0 13 68 157 209 144 239 0.79 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 510 TrwB_AAD_bind PF10412.4 386 6.6e-119 389.1 0.0 1 1 3.7e-120 7.8e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_13 - 867 TrwB_AAD_bind PF10412.4 386 7.1e-07 20.3 2.0 1 2 1.5e-06 3.1e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 867 TrwB_AAD_bind PF10412.4 386 7.1e-07 20.3 2.0 2 2 0.0042 0.089 3.5 0.0 102 168 741 806 720 812 0.79 # 5696 # 8296 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_20 - 332 TrwB_AAD_bind PF10412.4 386 8.6e-06 16.7 0.1 1 1 6.4e-07 1.3e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 Sigma54_activ_2 PF14532.1 138 1.5e-06 20.5 0.0 1 1 5.1e-08 3.2e-06 19.5 0.0 14 65 151 202 145 211 0.91 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_24 - 510 T4SS-DNA_transf PF02534.9 469 3.4e-12 37.8 0.0 1 1 7.9e-14 5e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 18889 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_6 - 584 ArgK PF03308.11 267 9.1e-08 23.4 0.3 1 2 1e-05 0.00065 10.7 0.1 34 71 13 50 9 54 0.93 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 ArgK PF03308.11 267 9.1e-08 23.4 0.3 2 2 1.6e-05 0.00099 10.1 0.0 32 71 330 369 305 389 0.86 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 Pox_A32 PF04665.7 241 6.6e-05 14.5 0.0 1 1 1.7e-06 0.00011 13.8 0.0 12 46 157 191 150 210 0.85 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_23 - 1079 PIF1 PF05970.9 364 1.3e-06 19.8 0.1 1 1 2.7e-07 8.5e-06 17.1 0.0 2 65 478 537 477 588 0.85 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 584 PIF1 PF05970.9 364 8.7e-06 17.1 0.1 1 2 0.001 0.032 5.3 0.0 20 56 6 42 2 49 0.83 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 PIF1 PF05970.9 364 8.7e-06 17.1 0.1 2 2 9.5e-05 0.003 8.7 0.0 13 59 318 364 308 381 0.86 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 GTP_EFTU PF00009.22 188 0.00014 13.6 0.2 1 1 3.5e-06 0.00022 12.9 0.2 2 32 157 187 156 205 0.83 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 Gtr1_RagA PF04670.7 232 0.00026 12.4 0.5 1 2 0.018 1.1 0.5 0.1 2 16 11 25 10 27 0.87 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 Gtr1_RagA PF04670.7 232 0.00026 12.4 0.5 2 2 5.2e-05 0.0033 8.8 0.1 2 19 330 347 329 378 0.87 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.6 0.1 1 2 7.3e-06 0.00023 13.6 0.0 1 25 161 185 161 239 0.76 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 332 RNA_helicase PF00910.17 107 1.3e-05 17.6 0.1 2 2 0.054 1.7 1.2 0.1 69 100 290 322 281 328 0.78 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 RNA_helicase PF00910.17 107 0.00021 13.8 0.2 1 2 0.037 1.2 1.7 0.0 2 18 12 28 11 50 0.80 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 RNA_helicase PF00910.17 107 0.00021 13.8 0.2 2 2 0.00017 0.0052 9.3 0.0 1 26 330 355 330 377 0.86 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 UPF0079 PF02367.12 123 3.9e-06 18.8 0.0 1 1 1.2e-07 7.8e-06 17.8 0.0 9 45 152 188 145 192 0.85 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 AAA_24 PF13479.1 213 0.0016 10.2 3.2 1 2 0.0039 0.25 3.1 0.3 10 50 15 65 10 146 0.62 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_24 PF13479.1 213 0.0016 10.2 3.2 2 2 0.00033 0.021 6.6 0.2 6 22 330 346 327 353 0.87 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 Myosin_head PF00063.16 689 0.0001 12.7 0.0 1 1 2.2e-06 0.00014 12.2 0.0 84 110 157 183 147 208 0.90 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 NACHT PF05729.7 166 1.2e-05 17.2 0.1 1 2 0.029 0.91 1.4 0.1 2 19 10 27 9 39 0.79 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 NACHT PF05729.7 166 1.2e-05 17.2 0.1 2 2 9.3e-06 0.00029 12.8 0.0 2 28 329 355 328 460 0.90 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_20 - 332 NACHT PF05729.7 166 5.6e-05 15.1 0.0 1 1 3.8e-06 0.00012 14.0 0.0 1 27 159 185 159 188 0.90 # 13329 # 14324 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_6 - 584 AAA_25 PF13481.1 194 1.4e-11 36.4 0.7 1 2 2.3e-05 0.0014 10.2 0.0 37 79 12 44 8 63 0.80 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_25 PF13481.1 194 1.4e-11 36.4 0.7 2 2 1.6e-09 9.8e-08 23.8 0.1 23 151 316 449 295 496 0.64 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 1_23 - 1079 Herpes_Helicase PF02689.9 819 1.3e-05 15.3 0.0 1 2 0.0014 0.087 2.7 0.0 173 208 539 574 515 584 0.81 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_23 - 1079 Herpes_Helicase PF02689.9 819 1.3e-05 15.3 0.0 2 2 9.3e-06 0.00058 9.9 0.0 739 782 850 894 831 914 0.80 # 15653 # 18889 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_6 - 584 AAA_5 PF07728.9 139 7.8e-05 14.7 0.1 1 2 0.014 0.88 1.6 0.0 2 31 11 43 10 66 0.76 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 AAA_5 PF07728.9 139 7.8e-05 14.7 0.1 2 2 2.8e-05 0.0018 10.3 0.0 2 46 330 374 329 432 0.78 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 APS_kinase PF01583.15 157 3e-07 22.5 0.2 1 2 1.9e-05 0.0012 10.8 0.0 4 37 10 43 7 52 0.89 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 2_6 - 584 APS_kinase PF01583.15 157 3e-07 22.5 0.2 2 2 5.7e-05 0.0036 9.2 0.1 5 38 330 363 327 387 0.85 # 3055 # 4806 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.513 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eee14ce4-cbb9-46f4-88a9-4ca855f000da # Target file: checkm_output/bins/pm1262/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1262/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eee14ce4-cbb9-46f4-88a9-4ca855f000da checkm_output/bins/pm1262/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:55:00 2020 # [ok]