# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 146 Limkain-b1 PF11608.3 91 0.00055 12.6 0.0 1 1 7.9e-06 0.00076 12.1 0.0 41 74 13 46 7 67 0.89 # 12553 # 12990 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.621 1_65 - 113 cobW PF02492.14 178 0.0003 13.1 0.0 1 1 5.1e-06 0.0005 12.4 0.0 5 24 83 106 80 111 0.76 # 53559 # 53897 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 1_84 - 402 MipZ PF09140.6 261 5.5e-06 18.4 0.0 1 2 0.0025 0.24 3.2 0.0 3 50 111 163 109 201 0.73 # 67453 # 68658 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_84 - 402 MipZ PF09140.6 261 5.5e-06 18.4 0.0 2 2 2.8e-06 0.00027 12.9 0.0 87 136 233 282 220 305 0.87 # 67453 # 68658 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_71 - 173 SSB PF00436.20 104 1.1e-42 137.1 0.4 1 1 1.5e-44 1.4e-42 136.7 0.4 1 103 6 112 6 113 0.96 # 57585 # 58103 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.574 1_43 - 1754 UvrD_C_2 PF13538.1 104 3.1e-07 23.4 0.4 1 1 3.5e-08 3.4e-06 20.1 0.1 3 102 1337 1440 1335 1442 0.78 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_60 - 883 DUF87 PF01935.12 229 3e-07 23.3 0.0 1 1 1.1e-08 5.4e-07 22.5 0.0 26 221 482 668 468 676 0.75 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 323 DUF87 PF01935.12 229 0.00057 12.6 0.2 1 1 0.0001 0.0051 9.5 0.0 26 52 43 69 40 73 0.85 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 NB-ARC PF00931.17 287 0.00039 12.2 0.3 1 1 5.9e-06 0.00058 11.6 0.3 8 104 29 126 22 144 0.74 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 AAA_22 PF13401.1 131 4.8e-16 52.0 0.3 1 1 1.1e-17 1.1e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 PRK PF00485.13 194 0.00033 13.1 0.0 1 1 7e-06 0.00068 12.1 0.0 1 38 42 81 42 132 0.66 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_78 - 158 N6_N4_Mtase PF01555.13 231 1.1e-13 44.1 0.0 1 1 1.2e-15 1.2e-13 43.9 0.0 1 115 21 125 21 153 0.86 # 62516 # 62989 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_95 - 323 AAA_17 PF13207.1 121 0.00014 15.5 0.1 1 1 3.4e-06 0.00033 14.4 0.0 1 40 42 89 42 186 0.63 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 MobB PF03205.9 140 0.00031 13.3 0.1 1 1 2.2e-05 0.0011 11.6 0.0 2 31 42 70 41 86 0.78 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_60 - 883 MobB PF03205.9 140 0.00078 12.0 0.1 1 1 5.4e-05 0.0026 10.3 0.0 4 37 483 515 481 523 0.79 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_43 - 1754 PhoH PF02562.11 205 0.00026 13.1 0.0 1 1 1e-05 0.00099 11.2 0.1 3 59 966 1026 964 1042 0.84 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_95 - 323 T2SE PF00437.15 272 2.6e-06 19.3 0.7 1 1 1.3e-07 1.3e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 Arch_ATPase PF01637.13 234 3.5e-05 16.4 0.2 1 1 8.6e-07 8.3e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 AAA_16 PF13191.1 185 3.5e-11 36.3 1.2 1 1 1.8e-11 4.4e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_44 - 673 AAA_16 PF13191.1 185 0.00014 14.7 0.0 1 1 2.3e-05 0.00056 12.8 0.0 21 55 181 215 178 246 0.85 # 33422 # 35440 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_65 - 113 AAA_16 PF13191.1 185 0.00045 13.1 0.0 1 1 2.6e-05 0.00062 12.6 0.0 26 51 80 105 57 111 0.83 # 53559 # 53897 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 1_43 - 1754 AAA_16 PF13191.1 185 0.00063 12.6 2.5 1 2 0.0057 0.14 5.0 0.0 25 47 985 1007 964 1018 0.84 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_43 - 1754 AAA_16 PF13191.1 185 0.00063 12.6 2.5 2 2 0.0043 0.1 5.4 0.1 48 148 1086 1218 1036 1239 0.75 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_95 - 323 AAA_18 PF13238.1 129 8.9e-05 15.7 0.0 1 1 1.7e-06 0.00016 14.8 0.0 1 23 43 90 43 138 0.67 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_90 - 372 AAA_13 PF13166.1 712 0.079 4.1 35.7 1 2 0.00079 0.076 4.2 28.7 273 455 74 262 53 280 0.68 # 71690 # 72805 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_90 - 372 AAA_13 PF13166.1 712 0.079 4.1 35.7 2 2 0.0041 0.39 1.8 25.3 278 478 158 356 152 365 0.56 # 71690 # 72805 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_84 - 402 CbiA PF01656.18 195 2.2e-18 59.2 0.0 1 1 4.6e-20 4.5e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 67453 # 68658 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_95 - 323 KaiC PF06745.8 227 0.00019 13.4 0.1 1 1 4.3e-06 0.00042 12.3 0.1 12 43 33 63 27 149 0.80 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 AAA_14 PF13173.1 128 4e-06 19.6 0.0 1 1 1.7e-07 1.7e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 AAA PF00004.24 132 1.5e-06 21.3 0.0 1 1 3.5e-08 3.4e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_44 - 673 TraG-D_C PF12696.2 128 6.9e-21 67.3 0.0 1 2 0.088 8.5 -0.9 0.0 12 60 195 242 191 246 0.85 # 33422 # 35440 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_44 - 673 TraG-D_C PF12696.2 128 6.9e-21 67.3 0.0 2 2 3.8e-22 3.7e-20 65.0 0.0 1 127 418 540 418 541 0.87 # 33422 # 35440 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_84 - 402 AAA_31 PF13614.1 157 0.00044 13.1 0.1 1 2 0.071 6.9 -0.6 0.0 12 61 120 174 110 209 0.55 # 67453 # 68658 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_84 - 402 AAA_31 PF13614.1 157 0.00044 13.1 0.1 2 2 3.1e-05 0.003 10.3 0.0 108 147 235 273 231 279 0.86 # 67453 # 68658 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_95 - 323 AAA_33 PF13671.1 143 0.00016 14.5 0.0 1 1 3.7e-06 0.00035 13.3 0.0 1 45 42 100 42 132 0.60 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_78 - 158 Methyltransf_26 PF13659.1 117 4.2e-06 19.7 0.0 1 1 6.6e-08 6.4e-06 19.1 0.0 60 114 10 71 3 74 0.70 # 62516 # 62989 # -1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_43 - 1754 AAA_30 PF13604.1 196 7.1e-42 136.0 23.4 1 3 0.038 1.8 0.9 0.0 41 86 223 269 218 282 0.84 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_43 - 1754 AAA_30 PF13604.1 196 7.1e-42 136.0 23.4 2 3 1.2e-05 0.0006 12.3 2.0 9 133 421 539 419 559 0.79 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_43 - 1754 AAA_30 PF13604.1 196 7.1e-42 136.0 23.4 3 3 1.7e-43 8e-42 135.9 1.7 1 185 967 1154 967 1159 0.95 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_95 - 323 AAA_30 PF13604.1 196 0.00016 14.2 0.3 1 1 9.7e-06 0.00047 12.6 0.3 15 128 38 164 27 170 0.55 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_60 - 883 FtsK_SpoIIIE PF01580.13 205 2.8e-05 16.5 0.1 1 2 2e-06 0.0002 13.7 0.0 39 63 476 504 463 507 0.84 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 883 FtsK_SpoIIIE PF01580.13 205 2.8e-05 16.5 0.1 2 2 0.035 3.4 -0.1 0.0 76 166 531 625 529 632 0.78 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_90 - 372 AAA_27 PF13514.1 1111 0.047 4.1 60.6 1 2 0.0083 0.8 0.0 41.6 630 830 68 253 45 256 0.77 # 71690 # 72805 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_90 - 372 AAA_27 PF13514.1 1111 0.047 4.1 60.6 2 2 0.00053 0.051 4.0 29.0 235 400 200 361 187 369 0.75 # 71690 # 72805 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_95 - 323 ABC_tran PF00005.22 137 6.9e-06 19.3 0.1 1 1 1.4e-07 1.3e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_43 - 1754 AAA_19 PF13245.1 76 3.8e-07 22.7 2.3 1 1 2.5e-08 8e-07 21.7 0.5 7 76 980 1046 973 1046 0.77 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_95 - 323 AAA_19 PF13245.1 76 6.2e-05 15.6 0.2 1 1 9.8e-06 0.00032 13.3 0.1 6 37 36 67 32 119 0.75 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_65 - 113 AAA_19 PF13245.1 76 0.0003 13.4 0.0 1 1 1.4e-05 0.00044 12.9 0.0 15 42 83 109 69 112 0.78 # 53559 # 53897 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 1_60 - 883 AAA_10 PF12846.2 304 1.3e-49 162.0 0.0 1 1 6.9e-51 2.2e-49 161.3 0.0 1 294 479 768 479 774 0.87 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_44 - 673 AAA_10 PF12846.2 304 4.8e-07 22.3 0.0 1 1 8.6e-07 2.8e-05 16.5 0.0 4 295 187 492 185 497 0.53 # 33422 # 35440 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_95 - 323 AAA_10 PF12846.2 304 9.8e-07 21.3 0.1 1 2 1.3e-05 0.00041 12.7 0.0 3 34 42 73 40 106 0.73 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 AAA_10 PF12846.2 304 9.8e-07 21.3 0.1 2 2 0.0019 0.062 5.5 0.0 216 245 120 150 79 207 0.83 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 ResIII PF04851.10 184 9.5e-06 18.4 0.2 1 2 1.7e-05 0.0017 11.1 0.3 29 101 44 110 20 121 0.72 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 ResIII PF04851.10 184 9.5e-06 18.4 0.2 2 2 0.00058 0.056 6.1 0.0 131 162 109 140 96 153 0.63 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 DUF2075 PF09848.4 352 1.7e-06 20.0 0.1 1 1 5.2e-08 2.5e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_65 - 113 DUF2075 PF09848.4 352 5.1e-05 15.2 0.0 1 1 1.3e-06 6.4e-05 14.8 0.0 4 30 81 107 78 112 0.78 # 53559 # 53897 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 1_44 - 673 TrwB_AAD_bind PF10412.4 386 1.3e-145 477.6 0.0 1 1 5e-147 1.6e-145 477.3 0.0 2 386 171 560 170 560 0.99 # 33422 # 35440 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_60 - 883 TrwB_AAD_bind PF10412.4 386 5.3e-07 21.4 0.2 1 2 6.9e-08 2.2e-06 19.3 0.0 15 53 479 517 470 552 0.81 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 883 TrwB_AAD_bind PF10412.4 386 5.3e-07 21.4 0.2 2 2 0.095 3.1 -0.9 0.0 261 317 713 769 707 772 0.92 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_95 - 323 TrwB_AAD_bind PF10412.4 386 0.00014 13.4 0.5 1 2 5e-05 0.0016 9.9 0.0 14 44 39 69 35 76 0.83 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 TrwB_AAD_bind PF10412.4 386 0.00014 13.4 0.5 2 2 0.063 2 -0.3 0.0 234 275 115 158 112 169 0.78 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_43 - 1754 AAA_11 PF13086.1 236 0.00011 14.6 0.0 1 1 5.1e-06 0.00049 12.5 0.0 2 75 968 1038 967 1059 0.80 # 28066 # 33327 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_44 - 673 T4SS-DNA_transf PF02534.9 469 4.1e-12 38.2 0.0 1 1 1.7e-13 8.4e-12 37.2 0.0 276 392 393 505 363 541 0.81 # 33422 # 35440 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_60 - 883 T4SS-DNA_transf PF02534.9 469 0.00019 12.9 0.0 1 2 0.0019 0.093 4.0 0.0 105 185 533 607 470 622 0.85 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_60 - 883 T4SS-DNA_transf PF02534.9 469 0.00019 12.9 0.0 2 2 0.00033 0.016 6.6 0.0 321 378 713 769 665 771 0.93 # 49187 # 51835 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_65 - 113 ArgK PF03308.11 267 7.9e-05 14.3 0.0 1 1 9.5e-07 9.3e-05 14.1 0.0 22 59 71 108 56 111 0.85 # 53559 # 53897 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 1_65 - 113 Pox_A32 PF04665.7 241 0.00056 12.1 0.0 1 1 8.3e-06 0.00081 11.6 0.0 7 40 72 105 67 108 0.90 # 53559 # 53897 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.440 1_95 - 323 PIF1 PF05970.9 364 2.8e-05 16.0 0.0 1 1 6.3e-07 6.1e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 UPF0079 PF02367.12 123 0.00011 14.7 0.0 1 1 2.2e-06 0.00021 13.8 0.0 3 45 28 70 26 114 0.84 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 NACHT PF05729.7 166 0.00047 12.7 0.2 1 1 1.1e-05 0.0011 11.5 0.2 1 28 41 68 41 140 0.77 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_95 - 323 AAA_5 PF07728.9 139 7.8e-05 15.3 0.1 1 1 7e-06 0.00068 12.2 0.2 5 90 46 149 43 152 0.85 # 77354 # 78322 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2448ddaf-b31b-45a2-90c8-f721ee9fee23 # Target file: checkm_output/bins/pm1253/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1253/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2448ddaf-b31b-45a2-90c8-f721ee9fee23 checkm_output/bins/pm1253/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:54 2020 # [ok]