# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_26 - 359 Mg_chelatase PF01078.16 207 0.00016 12.8 0.0 1 1 5.9e-06 0.00029 11.9 0.0 14 51 182 219 170 236 0.81 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_7 - 210 Seryl_tRNA_N PF02403.17 108 0.00011 14.2 15.1 1 2 0.0063 0.31 3.0 0.1 2 87 15 102 15 108 0.61 # 5839 # 6468 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_7 - 210 Seryl_tRNA_N PF02403.17 108 0.00011 14.2 15.1 2 2 0.00099 0.048 5.6 16.4 3 100 90 182 89 206 0.79 # 5839 # 6468 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_26 - 359 IstB_IS21 PF01695.12 178 0.00014 13.3 0.0 1 1 4.8e-06 0.00023 12.5 0.0 46 68 189 211 162 230 0.85 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_15 - 118 SSB PF00436.20 104 1.4e-13 42.6 0.0 1 1 3.3e-15 1.6e-13 42.4 0.0 2 101 3 105 2 108 0.91 # 11609 # 11962 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_25 - 967 UvrD_C_2 PF13538.1 104 7.1e-14 43.8 0.4 1 1 1.4e-15 7.1e-14 43.8 0.4 3 100 795 890 793 894 0.80 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_24 - 508 DUF87 PF01935.12 229 2.6e-06 19.3 0.0 1 1 2e-07 4.8e-06 18.4 0.0 24 63 124 162 119 188 0.86 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 DUF87 PF01935.12 229 1.1e-05 17.2 0.0 1 1 1e-06 2.5e-05 16.0 0.0 23 47 190 214 173 227 0.86 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 AAA_22 PF13401.1 131 1.1e-05 17.5 0.0 1 1 8.2e-07 2e-05 16.7 0.0 3 33 189 219 184 291 0.77 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 AAA_22 PF13401.1 131 2.3e-05 16.5 0.0 1 1 1e-05 0.00025 13.1 0.0 3 27 122 146 119 169 0.88 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 AAA_17 PF13207.1 121 6.8e-06 18.8 0.0 1 1 3.7e-07 1.8e-05 17.5 0.0 2 22 193 213 192 280 0.82 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 Miro PF08477.8 119 3e-05 16.4 0.0 1 2 0.051 2.5 0.6 0.0 49 92 51 91 38 101 0.86 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 Miro PF08477.8 119 3e-05 16.4 0.0 2 2 8.2e-06 0.0004 12.8 0.0 2 32 193 219 192 281 0.84 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 MobB PF03205.9 140 7.8e-06 17.6 0.1 1 1 6.2e-07 3e-05 15.6 0.0 3 36 193 225 191 229 0.77 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_25 - 967 PhoH PF02562.11 205 4.8e-05 14.5 0.9 1 2 4.3e-05 0.0021 9.2 0.1 5 35 473 505 470 521 0.87 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_25 - 967 PhoH PF02562.11 205 4.8e-05 14.5 0.9 2 2 0.0025 0.12 3.4 0.1 120 161 557 599 528 626 0.81 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_26 - 359 T2SE PF00437.15 272 2.7e-58 188.9 0.0 1 1 6.5e-60 3.2e-58 188.6 0.0 3 269 27 339 25 342 0.96 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 Zeta_toxin PF06414.7 201 7.5e-06 17.0 0.0 1 1 5.9e-07 1.4e-05 16.1 0.0 17 49 191 224 184 240 0.89 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 Zeta_toxin PF06414.7 201 0.0005 11.1 0.0 1 1 7.4e-05 0.0018 9.2 0.0 10 50 117 159 107 167 0.84 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 AAA_16 PF13191.1 185 7.4e-07 21.2 0.3 1 3 1.1e-06 2.6e-05 16.1 0.0 19 45 118 144 104 155 0.90 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 AAA_16 PF13191.1 185 7.4e-07 21.2 0.3 2 3 0.09 2.2 0.1 0.1 128 178 331 372 318 391 0.65 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 AAA_16 PF13191.1 185 7.4e-07 21.2 0.3 3 3 0.081 2 0.2 0.0 49 106 372 434 360 462 0.75 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 AAA_16 PF13191.1 185 0.00019 13.3 0.0 1 1 2.4e-05 0.0006 11.7 0.0 25 51 191 217 180 228 0.87 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 AAA_23 PF13476.1 202 8.7e-05 14.8 0.0 1 1 2.8e-06 0.00014 14.2 0.0 19 37 190 208 154 210 0.69 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 AAA_18 PF13238.1 129 2.3e-06 19.8 0.0 1 1 2.8e-07 7e-06 18.3 0.0 1 22 193 214 193 244 0.76 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 AAA_18 PF13238.1 129 0.00049 12.3 0.0 1 1 3.6e-05 0.00089 11.5 0.0 2 33 127 161 126 202 0.74 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_7 - 210 AAA_13 PF13166.1 712 2.5e-05 14.8 5.8 1 1 6.7e-07 3.3e-05 14.3 5.8 278 457 83 199 36 206 0.46 # 5839 # 6468 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_21 - 232 CbiA PF01656.18 195 8.2e-09 27.0 0.2 1 2 6.2e-06 0.00015 13.1 0.0 1 20 3 22 3 24 0.93 # 14996 # 15691 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_21 - 232 CbiA PF01656.18 195 8.2e-09 27.0 0.2 2 2 1.3e-05 0.00033 12.0 0.0 116 164 90 136 31 158 0.83 # 14996 # 15691 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_26 - 359 CbiA PF01656.18 195 0.00045 11.5 0.3 1 1 4.7e-05 0.0012 10.2 0.3 2 20 193 211 192 214 0.91 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 KaiC PF06745.8 227 2.1e-05 15.6 0.0 1 2 5.1e-06 0.00025 12.1 0.0 20 54 124 157 120 163 0.91 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 KaiC PF06745.8 227 2.1e-05 15.6 0.0 2 2 0.013 0.64 0.9 0.0 3 42 246 285 244 291 0.86 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 AAA_14 PF13173.1 128 8.5e-07 20.8 0.0 1 2 1.9e-06 4.6e-05 15.2 0.0 4 86 125 207 122 236 0.78 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 AAA_14 PF13173.1 128 8.5e-07 20.8 0.0 2 2 0.0099 0.24 3.2 0.0 56 99 342 387 326 398 0.74 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 AAA_14 PF13173.1 128 6.9e-05 14.7 0.0 1 1 6.1e-06 0.00015 13.6 0.0 2 36 190 224 189 328 0.72 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 AAA_29 PF13555.1 62 0.00029 12.3 0.0 1 1 1.5e-05 0.00072 11.0 0.0 24 39 191 206 178 212 0.86 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 AAA PF00004.24 132 0.00035 12.7 0.0 1 1 2.8e-05 0.0014 10.8 0.0 2 27 194 221 193 271 0.75 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 Sigma54_activat PF00158.21 168 7.3e-06 17.4 0.0 1 1 2.7e-07 1.3e-05 16.6 0.0 12 51 180 219 174 247 0.86 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_21 - 232 MMR_HSR1 PF01926.18 116 0.00013 13.9 0.0 1 1 4.9e-06 0.00024 13.0 0.0 9 116 11 131 9 131 0.54 # 14996 # 15691 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_24 - 508 TraG-D_C PF12696.2 128 1.2e-24 78.6 0.0 1 1 3.5e-26 1.7e-24 78.0 0.0 1 127 350 471 350 472 0.85 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 NTPase_1 PF03266.10 168 0.00022 12.9 0.5 1 1 1.4e-05 0.00067 11.3 0.1 1 23 192 214 192 222 0.88 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 AAA_33 PF13671.1 143 3.1e-05 15.8 0.0 1 1 1.5e-06 7.4e-05 14.6 0.0 2 24 193 215 193 307 0.90 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_25 - 967 AAA_30 PF13604.1 196 1.2e-56 183.2 8.3 1 1 1e-57 4.9e-56 181.3 8.3 1 193 472 656 472 659 0.98 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_26 - 359 FtsK_SpoIIIE PF01580.13 205 3.6e-07 21.7 0.0 1 1 3.2e-08 7.9e-07 20.6 0.0 39 60 187 212 156 217 0.78 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 FtsK_SpoIIIE PF01580.13 205 5.6e-07 21.1 0.0 1 1 5.4e-08 1.3e-06 19.9 0.0 23 80 97 161 88 172 0.74 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 ABC_tran PF00005.22 137 1.6e-06 20.4 0.0 1 1 6.7e-08 3.3e-06 19.4 0.0 12 46 191 225 185 243 0.84 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 DAP3 PF10236.4 309 0.00061 10.6 0.0 1 1 2.3e-05 0.0011 9.8 0.0 21 67 121 168 101 193 0.73 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_25 - 967 AAA_19 PF13245.1 76 1e-09 30.0 0.8 1 2 2.2e-07 5.3e-06 18.1 0.1 7 75 485 546 479 560 0.82 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_25 - 967 AAA_19 PF13245.1 76 1e-09 30.0 0.8 2 2 0.00021 0.0052 8.5 0.1 30 65 663 699 661 716 0.78 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_24 - 508 AAA_19 PF13245.1 76 8.2e-06 17.5 0.0 1 2 2e-05 0.00049 11.8 0.0 10 53 124 162 118 170 0.73 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 AAA_19 PF13245.1 76 8.2e-06 17.5 0.0 2 2 0.016 0.39 2.5 0.0 50 62 449 461 448 479 0.79 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_25 - 967 Helicase_RecD PF05127.9 177 8.8e-05 14.1 0.5 1 1 5.3e-05 0.0026 9.3 0.2 78 112 546 578 493 596 0.75 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_34 - 824 AAA_10 PF12846.2 304 1.4e-44 144.6 0.4 1 1 2.8e-45 4.6e-44 142.9 0.0 2 303 445 730 444 731 0.88 # 27383 # 29854 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_24 - 508 AAA_10 PF12846.2 304 2e-12 39.0 0.1 1 1 2.9e-11 4.7e-10 31.2 0.1 2 285 124 413 123 430 0.67 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 AAA_10 PF12846.2 304 4.9e-05 14.7 0.0 1 1 5.5e-06 9e-05 13.9 0.0 2 24 191 213 190 228 0.85 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 ResIII PF04851.10 184 0.00037 12.2 0.0 1 1 3e-05 0.00073 11.3 0.0 21 49 188 214 170 231 0.79 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 ResIII PF04851.10 184 0.00049 11.8 0.0 1 1 3.3e-05 0.00081 11.1 0.0 23 63 121 164 95 181 0.74 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_25 - 967 Viral_helicase1 PF01443.13 234 6.9e-15 47.0 0.5 1 2 1.5e-10 7.4e-09 27.3 0.0 3 154 494 650 492 697 0.67 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_25 - 967 Viral_helicase1 PF01443.13 234 6.9e-15 47.0 0.5 2 2 1.4e-07 6.9e-06 17.6 0.2 184 231 849 892 808 895 0.83 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_24 - 508 DUF2075 PF09848.4 352 0.00027 11.8 0.0 1 1 7.9e-06 0.00039 11.3 0.0 3 40 125 160 123 181 0.78 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 Adeno_IVa2 PF02456.10 370 0.00062 10.3 0.0 1 1 2e-05 0.00099 9.6 0.0 85 131 121 165 97 170 0.82 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 DEAD PF00270.24 169 3e-05 15.5 0.0 1 1 1.3e-06 6.5e-05 14.4 0.0 11 56 187 229 178 257 0.77 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 DUF853 PF05872.7 504 6e-07 20.0 0.0 1 1 1.8e-08 8.9e-07 19.4 0.0 14 74 116 174 102 187 0.81 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 TrwB_AAD_bind PF10412.4 386 6.5e-129 421.7 0.0 1 1 4.7e-130 7.7e-129 421.5 0.0 2 385 110 490 109 491 0.98 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 TrwB_AAD_bind PF10412.4 386 2.2e-05 15.1 0.0 1 1 1.8e-06 2.9e-05 14.7 0.0 15 62 190 249 185 345 0.67 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_34 - 824 TrwB_AAD_bind PF10412.4 386 6.2e-05 13.6 0.1 1 2 0.00014 0.0022 8.5 0.0 17 52 446 481 438 485 0.93 # 27383 # 29854 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_34 - 824 TrwB_AAD_bind PF10412.4 386 6.2e-05 13.6 0.1 2 2 0.0087 0.14 2.5 0.0 243 319 647 724 633 738 0.72 # 27383 # 29854 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_26 - 359 Sigma54_activ_2 PF14532.1 138 6.7e-05 14.9 0.0 1 1 3.5e-06 0.00017 13.6 0.0 10 58 179 227 177 236 0.87 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 T4SS-DNA_transf PF02534.9 469 2.4e-16 51.2 0.0 1 2 0.0039 0.19 2.0 0.0 37 119 116 193 93 218 0.71 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 508 T4SS-DNA_transf PF02534.9 469 2.4e-16 51.2 0.0 2 2 9e-17 4.4e-15 47.0 0.0 293 439 341 485 297 489 0.86 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 Pox_A32 PF04665.7 241 0.00015 13.0 0.0 1 1 7e-06 0.00034 11.8 0.0 15 37 192 214 180 224 0.85 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_25 - 967 PIF1 PF05970.9 364 1.5e-06 19.2 0.2 1 2 2.2e-07 1.1e-05 16.4 0.1 2 60 473 527 472 611 0.76 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_25 - 967 PIF1 PF05970.9 364 1.5e-06 19.2 0.2 2 2 0.037 1.8 -0.8 0.0 329 362 787 819 778 821 0.83 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_26 - 359 RNA_helicase PF00910.17 107 0.0002 13.5 0.0 1 1 9.3e-06 0.00045 12.3 0.0 1 23 193 215 193 253 0.77 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 UPF0079 PF02367.12 123 0.00011 13.7 0.0 1 1 4e-06 0.0002 12.9 0.0 18 43 193 218 180 255 0.86 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 AAA_24 PF13479.1 213 0.00017 13.1 0.0 1 1 6.7e-06 0.00033 12.2 0.0 5 25 192 213 190 226 0.84 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 359 NACHT PF05729.7 166 5.3e-06 18.1 0.0 1 1 7.2e-07 1.8e-05 16.4 0.0 2 23 192 213 191 218 0.90 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_24 - 508 NACHT PF05729.7 166 0.00026 12.6 0.2 1 1 4.6e-05 0.0011 10.5 0.1 2 22 125 145 124 151 0.90 # 16934 # 18457 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_26 - 359 AAA_25 PF13481.1 194 0.00011 13.6 0.0 1 1 3.7e-06 0.00018 12.8 0.0 22 77 180 241 159 312 0.65 # 21440 # 22516 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_14 - 259 ABC_tran_2 PF12848.2 85 0.0012 10.7 10.4 1 3 0.078 3.8 -0.6 3.8 33 55 5 28 1 40 0.60 # 10634 # 11410 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.615 1_14 - 259 ABC_tran_2 PF12848.2 85 0.0012 10.7 10.4 2 3 0.0002 0.0096 7.7 0.1 45 71 98 125 95 135 0.84 # 10634 # 11410 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.615 1_14 - 259 ABC_tran_2 PF12848.2 85 0.0012 10.7 10.4 3 3 0.00074 0.036 5.9 0.0 52 76 163 185 159 194 0.77 # 10634 # 11410 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.615 1_25 - 967 Herpes_Helicase PF02689.9 819 3.1e-05 13.7 0.1 1 2 0.0044 0.22 1.0 0.0 176 212 537 573 520 577 0.76 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_25 - 967 Herpes_Helicase PF02689.9 819 3.1e-05 13.7 0.1 2 2 8e-06 0.00039 10.1 0.0 741 780 848 888 818 915 0.81 # 18457 # 21357 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.601 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c134c354-9664-4fad-b080-d4e1c0427dfc # Target file: checkm_output/bins/pm1250/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1250/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c134c354-9664-4fad-b080-d4e1c0427dfc checkm_output/bins/pm1250/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:52 2020 # [ok]