# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_18 - 209 MipZ PF09140.6 261 1.5e-07 22.0 0.0 1 2 7.5e-08 2.5e-06 18.0 0.0 6 41 7 42 4 48 0.91 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_18 - 209 MipZ PF09140.6 261 1.5e-07 22.0 0.0 2 2 0.007 0.23 1.8 0.0 176 212 124 163 108 187 0.70 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_22 - 777 AAA_22 PF13401.1 131 6.4e-05 14.5 3.7 1 3 0.0016 0.054 5.0 0.1 6 27 304 325 301 344 0.87 # 14956 # 17286 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_22 - 777 AAA_22 PF13401.1 131 6.4e-05 14.5 3.7 2 3 0.00042 0.014 6.9 0.1 80 103 347 374 341 396 0.72 # 14956 # 17286 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_22 - 777 AAA_22 PF13401.1 131 6.4e-05 14.5 3.7 3 3 0.025 0.83 1.2 0.1 61 101 539 581 479 609 0.69 # 14956 # 17286 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_22 - 777 DUF927 PF06048.6 286 1.4e-14 45.4 0.0 1 1 9.2e-16 3e-14 44.2 0.0 48 278 168 394 118 401 0.78 # 14956 # 17286 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_18 - 209 ArsA_ATPase PF02374.10 305 1.9e-07 21.7 0.3 1 3 4.7e-08 1.6e-06 18.7 0.0 9 40 10 41 4 76 0.86 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_18 - 209 ArsA_ATPase PF02374.10 305 1.9e-07 21.7 0.3 2 3 0.026 0.86 -0.2 0.0 121 136 68 83 58 111 0.80 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_18 - 209 ArsA_ATPase PF02374.10 305 1.9e-07 21.7 0.3 3 3 0.055 1.8 -1.2 0.0 87 116 129 158 110 163 0.64 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_18 - 209 VirC1 PF07015.6 231 2e-06 18.3 0.0 1 1 1.2e-07 3.9e-06 17.4 0.0 8 41 8 41 3 56 0.88 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_18 - 209 Fer4_NifH PF00142.13 273 8.4e-07 19.7 0.1 1 2 1.8e-07 5.8e-06 16.9 0.0 8 40 10 42 5 52 0.93 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_18 - 209 Fer4_NifH PF00142.13 273 8.4e-07 19.7 0.1 2 2 0.024 0.8 0.1 0.0 113 137 70 94 59 112 0.85 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_20 - 645 AAA_13 PF13166.1 712 0.022 4.4 56.9 1 3 5.4e-05 0.0018 8.0 30.3 275 433 285 448 274 466 0.76 # 12198 # 14132 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_20 - 645 AAA_13 PF13166.1 712 0.022 4.4 56.9 2 3 0.0073 0.24 1.0 6.5 104 204 451 548 440 555 0.63 # 12198 # 14132 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_20 - 645 AAA_13 PF13166.1 712 0.022 4.4 56.9 3 3 0.00027 0.0087 5.8 7.9 399 464 556 621 545 628 0.83 # 12198 # 14132 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_18 - 209 CbiA PF01656.18 195 6.5e-16 49.6 0.3 1 1 4.2e-16 1.4e-14 45.3 0.3 3 178 6 151 4 163 0.74 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_3 - 263 N6_Mtase PF02384.11 311 1.3e-13 41.9 0.0 1 1 1.4e-14 2.3e-13 41.1 0.0 4 120 112 234 108 252 0.80 # 1541 # 2329 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.285 1_4 - 243 N6_Mtase PF02384.11 311 2.8e-10 31.0 0.0 1 1 2.4e-11 4e-10 30.5 0.0 4 117 112 231 106 239 0.81 # 2411 # 3139 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.321 1_18 - 209 AAA_31 PF13614.1 157 1.3e-07 23.0 0.0 1 1 1.3e-08 4.3e-07 21.3 0.0 4 42 5 43 4 47 0.94 # 11080 # 11706 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/53873391-f657-4eec-a9d4-f51fec7fd595 # Target file: checkm_output/bins/pm1237/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1237/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/53873391-f657-4eec-a9d4-f51fec7fd595 checkm_output/bins/pm1237/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:43 2020 # [ok]