# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 210 MipZ PF09140.6 261 8.6e-13 38.0 1.7 1 2 6.1e-11 8.5e-10 28.2 0.1 2 40 3 41 2 53 0.90 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 MipZ PF09140.6 261 8.6e-13 38.0 1.7 2 2 3.8e-05 0.00054 9.2 0.2 96 135 73 112 61 151 0.78 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 YhjQ PF06564.7 244 7.4e-07 18.8 1.9 1 2 9.1e-08 1.3e-06 18.0 0.1 1 41 1 41 1 45 0.94 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 YhjQ PF06564.7 244 7.4e-07 18.8 1.9 2 2 0.044 0.61 -0.6 0.0 112 149 70 107 63 128 0.85 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 SRP54 PF00448.17 196 1e-05 15.1 0.1 1 1 1.7e-06 2.4e-05 14.0 0.1 10 38 11 39 2 46 0.88 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_17 PF13207.1 121 9.5e-09 26.3 0.0 1 1 1e-09 1.4e-08 25.8 0.0 9 78 12 93 11 171 0.66 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 MobB PF03205.9 140 9.1e-06 15.6 0.0 1 1 1.6e-06 2.2e-05 14.3 0.0 10 109 12 92 2 108 0.71 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 LpxK PF02606.9 326 1.3e-05 14.3 0.1 1 1 1.5e-06 2.2e-05 13.6 0.1 36 96 2 60 1 103 0.77 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 ArsA_ATPase PF02374.10 305 1.3e-07 21.0 0.1 1 1 1.5e-08 2.2e-07 20.3 0.0 6 45 7 46 1 63 0.85 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 SKI PF01202.17 158 6e-05 13.1 0.1 1 1 7.4e-06 0.0001 12.3 0.1 2 22 12 32 11 38 0.91 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 Methyltransf_24 PF13578.1 106 8.9e-05 13.5 0.1 1 1 1.5e-05 0.00021 12.3 0.1 7 83 13 89 11 104 0.73 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 VirC1 PF07015.6 231 4.7e-08 22.4 0.0 1 1 7.9e-09 1.1e-07 21.2 0.0 1 149 1 141 1 181 0.81 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 Fer4_NifH PF00142.13 273 1e-05 14.9 0.0 1 2 6.5e-06 9.1e-05 11.8 0.0 6 40 8 42 2 62 0.89 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 Fer4_NifH PF00142.13 273 1e-05 14.9 0.0 2 2 0.012 0.17 1.1 0.0 219 247 178 206 95 208 0.75 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_16 PF13191.1 185 1.8e-06 18.2 0.1 1 2 6e-06 8.4e-05 12.7 0.0 34 70 12 49 10 75 0.87 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_16 PF13191.1 185 1.8e-06 18.2 0.1 2 2 0.0034 0.048 3.7 0.0 52 119 96 167 81 208 0.72 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_18 PF13238.1 129 5.6e-05 13.6 0.0 1 1 7.4e-06 0.0001 12.7 0.0 8 26 12 33 10 132 0.77 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 CbiA PF01656.18 195 9.1e-33 103.4 0.3 1 1 1.2e-33 1.7e-32 102.5 0.3 1 181 4 165 4 175 0.76 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_31 PF13614.1 157 2.3e-11 34.0 0.0 1 2 7.5e-11 1e-09 28.6 0.0 1 41 2 42 2 46 0.93 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_31 PF13614.1 157 2.3e-11 34.0 0.0 2 2 0.0044 0.061 3.4 0.0 119 154 77 111 68 114 0.80 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 KTI12 PF08433.5 270 2e-05 13.9 0.0 1 1 2.2e-06 3e-05 13.4 0.0 11 45 12 46 6 85 0.72 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_19 PF13245.1 76 2e-05 14.5 0.4 1 1 6.9e-06 9.6e-05 12.3 0.0 20 51 12 41 4 62 0.79 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_10 PF12846.2 304 2.1e-05 14.1 0.0 1 1 1.9e-06 2.7e-05 13.8 0.0 11 51 12 54 10 90 0.89 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_3 - 156 DAO PF01266.19 358 1.4e-05 14.2 0.2 1 1 1.1e-06 1.6e-05 14.0 0.2 94 161 51 120 4 122 0.84 # 1855 # 2322 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_12 - 210 AAA_24 PF13479.1 213 1.3e-06 18.2 0.1 1 1 1.5e-07 2.2e-06 17.5 0.1 11 89 10 96 2 101 0.76 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 AAA_25 PF13481.1 194 0.00013 11.5 2.0 1 1 0.00019 0.0026 7.3 2.0 41 79 10 38 2 105 0.59 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_12 - 210 APS_kinase PF01583.15 157 2.5e-05 14.1 0.0 1 1 3.5e-06 4.9e-05 13.2 0.0 10 39 10 39 2 54 0.89 # 8991 # 9620 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6d249fcf-67c1-41b1-a7b3-c9854904654c # Target file: checkm_output/bins/pm1236/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1236/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6d249fcf-67c1-41b1-a7b3-c9854904654c checkm_output/bins/pm1236/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:42 2020 # [ok]