# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_18 - 188 Methyltransf_12 PF08242.7 99 1.1e-05 18.8 0.0 1 1 2e-07 1.9e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_28 - 228 UPF0020 PF01170.13 180 1.2e-05 17.7 0.0 1 2 0.00029 0.028 6.8 0.0 103 119 17 33 4 88 0.73 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_28 - 228 UPF0020 PF01170.13 180 1.2e-05 17.7 0.0 2 2 6.2e-05 0.0058 9.0 0.0 28 54 163 189 158 221 0.67 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_1 - 341 cobW PF02492.14 178 0.00077 11.8 0.0 1 1 1.4e-05 0.0013 11.0 0.0 4 30 5 31 3 53 0.72 # 366 # 1388 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_18 - 188 RrnaAD PF00398.15 262 3.3e-09 28.9 0.0 1 1 4.4e-11 4.2e-09 28.6 0.0 9 113 29 128 24 148 0.89 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_32 - 389 MipZ PF09140.6 261 4.1e-06 18.8 0.4 1 2 3.5e-06 0.00033 12.6 0.0 2 47 108 153 107 157 0.87 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_32 - 389 MipZ PF09140.6 261 4.1e-06 18.8 0.4 2 2 0.0011 0.11 4.4 0.0 88 134 224 270 197 292 0.84 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 2_16 - 562 3HCDH_N PF02737.13 180 0.0029 10.1 6.7 1 2 0.0025 0.24 3.9 2.5 1 30 100 129 100 133 0.93 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 3HCDH_N PF02737.13 180 0.0029 10.1 6.7 2 2 0.00014 0.013 7.9 0.1 2 36 273 307 272 359 0.71 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 GIDA PF01134.17 392 2e-06 19.7 2.9 1 4 2.1e-08 2e-06 19.7 2.9 1 52 100 153 100 166 0.88 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 GIDA PF01134.17 392 2e-06 19.7 2.9 2 4 0.074 7.1 -1.9 0.0 3 32 274 303 272 335 0.85 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 GIDA PF01134.17 392 2e-06 19.7 2.9 3 4 0.067 6.4 -1.7 0.0 128 167 339 363 311 382 0.57 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 GIDA PF01134.17 392 2e-06 19.7 2.9 4 4 0.03 2.9 -0.6 0.0 350 385 391 426 382 430 0.76 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_16 - 176 SSB PF00436.20 104 8.5e-41 130.9 0.3 1 1 1.1e-42 1.1e-40 130.6 0.3 1 101 6 109 6 112 0.95 # 18707 # 19234 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.585 1_18 - 188 Methyltransf_18 PF12847.2 112 2.8e-10 33.6 0.0 1 1 6.3e-12 6e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_1 - 341 UvrD_C_2 PF13538.1 104 7.3e-05 15.8 0.0 1 1 1.5e-06 0.00014 14.8 0.0 37 103 247 329 224 330 0.65 # 366 # 1388 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_16 - 562 Pyr_redox_2 PF07992.9 201 7.5e-42 136.3 0.0 1 1 2.8e-43 2.7e-41 134.5 0.0 1 199 100 407 100 409 0.96 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_11 - 1588 NB-ARC PF00931.17 287 6.6e-06 17.9 0.4 1 1 3.5e-07 3.3e-05 15.6 0.4 9 50 216 254 209 349 0.71 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_11 - 1588 AAA_22 PF13401.1 131 9.3e-06 18.7 0.3 1 1 1.6e-06 7.5e-05 15.7 0.3 3 98 225 300 220 335 0.68 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_1 - 341 AAA_22 PF13401.1 131 3.2e-05 16.9 0.0 1 1 4.7e-06 0.00022 14.2 0.0 8 111 5 155 4 167 0.75 # 366 # 1388 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_2 - 522 AAA_15 PF13175.1 415 3.2e-17 55.4 0.1 1 2 1.7e-09 1.6e-07 23.5 0.0 2 45 5 47 4 63 0.90 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 522 AAA_15 PF13175.1 415 3.2e-17 55.4 0.1 2 2 1.7e-11 1.6e-09 30.1 0.1 332 414 235 318 183 319 0.74 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_16 - 562 NAD_binding_7 PF13241.1 103 8.1e-06 18.9 2.1 1 2 6.2e-05 0.0059 9.7 0.1 9 38 100 129 97 164 0.90 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 NAD_binding_7 PF13241.1 103 8.1e-06 18.9 2.1 2 2 0.00024 0.023 7.8 0.1 8 41 271 307 264 384 0.68 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_28 - 228 N6_N4_Mtase PF01555.13 231 6e-37 120.1 0.0 1 2 1.2e-15 1.1e-13 44.0 0.0 1 114 21 124 21 137 0.89 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_28 - 228 N6_N4_Mtase PF01555.13 231 6e-37 120.1 0.0 2 2 5.4e-25 5.1e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 3_2 - 522 AAA_21 PF13304.1 303 5.9e-14 45.5 0.1 1 2 7.1e-07 6.7e-05 15.7 0.0 2 24 27 49 27 76 0.83 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 522 AAA_21 PF13304.1 303 5.9e-14 45.5 0.1 2 2 2.1e-10 2e-08 27.3 0.2 261 301 280 318 243 320 0.90 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_11 - 1588 Miro PF08477.8 119 0.00016 15.0 0.1 1 1 5.6e-06 0.00053 13.3 0.1 2 44 229 270 227 302 0.73 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_32 - 389 ArsA_ATPase PF02374.10 305 1.7e-06 20.1 0.4 1 2 1.7e-06 0.00016 13.6 0.1 9 36 115 142 109 151 0.89 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_32 - 389 ArsA_ATPase PF02374.10 305 1.7e-06 20.1 0.4 2 2 0.0011 0.11 4.3 0.0 123 136 231 244 221 251 0.84 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_11 - 1588 Zeta_toxin PF06414.7 201 0.00054 11.9 0.0 1 1 1.4e-05 0.0013 10.6 0.0 14 56 224 267 215 305 0.84 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_16 - 562 NAD_binding_8 PF13450.1 68 6.5e-05 15.8 1.2 1 2 6.9e-07 6.5e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 NAD_binding_8 PF13450.1 68 6.5e-05 15.8 1.2 2 2 0.091 8.6 -0.6 0.1 1 25 275 299 275 304 0.78 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 F420_oxidored PF03807.12 96 0.013 8.9 6.4 1 3 0.0019 0.18 5.2 1.1 2 33 101 128 100 132 0.87 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 F420_oxidored PF03807.12 96 0.013 8.9 6.4 2 3 0.0046 0.44 3.9 0.2 1 35 272 302 272 338 0.90 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 F420_oxidored PF03807.12 96 0.013 8.9 6.4 3 3 0.082 7.8 -0.1 0.0 23 52 351 381 341 388 0.78 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 3_2 - 522 SMC_N PF02463.14 220 2.4e-11 36.1 0.0 1 2 1.4e-11 1.3e-09 30.4 0.0 2 69 4 67 3 79 0.85 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 522 SMC_N PF02463.14 220 2.4e-11 36.1 0.0 2 2 0.0024 0.23 3.5 0.0 163 204 281 321 253 330 0.85 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_32 - 389 VirC1 PF07015.6 231 6.3e-05 14.9 0.1 1 2 0.00028 0.027 6.3 0.0 4 42 109 147 107 154 0.91 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_32 - 389 VirC1 PF07015.6 231 6.3e-05 14.9 0.1 2 2 0.0003 0.029 6.2 0.1 84 139 235 290 222 312 0.77 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_11 - 1588 Arch_ATPase PF01637.13 234 4e-06 19.5 3.0 1 1 4.8e-08 4.6e-06 19.3 0.3 3 83 211 306 210 354 0.66 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_5 - 564 AAA_16 PF13191.1 185 7.4e-05 15.6 0.0 1 1 3.4e-06 0.00016 14.5 0.0 14 64 46 96 38 113 0.77 # 4007 # 5698 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.405 1_11 - 1588 AAA_16 PF13191.1 185 0.00015 14.7 0.0 1 1 1.3e-05 0.00064 12.6 0.0 10 58 217 259 210 315 0.71 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 3_2 - 522 AAA_23 PF13476.1 202 3.1e-12 40.0 0.0 1 1 1.6e-13 1.5e-11 37.8 0.0 1 53 6 58 6 115 0.85 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_11 - 1588 AAA_18 PF13238.1 129 0.00015 14.9 0.1 1 1 1.4e-05 0.0013 11.9 0.1 1 106 229 353 229 368 0.76 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_32 - 389 CbiA PF01656.18 195 9.5e-37 119.1 0.0 1 1 1.3e-38 1.3e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_18 - 188 Methyltransf_25 PF13649.1 101 0.00011 15.4 0.0 1 1 1.7e-06 0.00016 14.9 0.0 1 101 54 142 54 142 0.81 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_11 - 1588 AAA_14 PF13173.1 128 0.00027 13.7 0.2 1 1 2.9e-06 0.00027 13.7 0.2 2 101 226 333 225 340 0.72 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_16 - 562 HI0933_like PF03486.9 409 9.7e-09 26.9 5.3 1 2 9.7e-07 9.3e-05 13.8 2.9 2 33 100 131 99 139 0.91 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 HI0933_like PF03486.9 409 9.7e-09 26.9 5.3 2 2 1.7e-06 0.00016 13.0 0.0 83 164 286 363 281 384 0.86 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 3_2 - 522 AAA_29 PF13555.1 62 9e-08 24.5 0.0 1 1 1.9e-09 1.8e-07 23.5 0.0 2 49 5 50 4 57 0.84 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_16 - 562 FAD_binding_2 PF00890.19 417 4.8e-06 18.4 5.5 1 3 5e-08 4.8e-06 18.4 5.5 2 32 101 131 100 138 0.91 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 FAD_binding_2 PF00890.19 417 4.8e-06 18.4 5.5 2 3 0.026 2.5 -0.4 0.6 146 204 315 366 300 385 0.69 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 FAD_binding_2 PF00890.19 417 4.8e-06 18.4 5.5 3 3 0.011 1.1 0.8 0.1 374 402 375 405 371 418 0.87 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_11 - 1588 AAA PF00004.24 132 6.7e-05 15.9 0.0 1 1 2e-06 0.00019 14.5 0.0 1 94 229 318 229 343 0.70 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_11 - 1588 Sigma54_activat PF00158.21 168 9.2e-06 18.0 0.0 1 1 2.1e-07 2e-05 16.9 0.0 11 83 215 286 209 307 0.81 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 2_16 - 562 Pyr_redox_3 PF13738.1 203 6.1e-19 61.7 0.1 1 3 3.1e-06 0.00029 13.7 0.1 167 199 98 130 70 144 0.84 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 Pyr_redox_3 PF13738.1 203 6.1e-19 61.7 0.1 2 3 6.4e-09 6.1e-07 22.5 0.0 115 201 219 304 172 306 0.78 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 Pyr_redox_3 PF13738.1 203 6.1e-19 61.7 0.1 3 3 1e-08 9.9e-07 21.8 0.0 88 155 316 378 308 431 0.85 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_18 - 188 N6_Mtase PF02384.11 311 0.00015 13.8 0.0 1 2 1.6e-05 0.0016 10.4 0.0 28 64 32 68 21 83 0.87 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_18 - 188 N6_Mtase PF02384.11 311 0.00015 13.8 0.0 2 2 0.018 1.7 0.4 0.0 127 137 114 124 103 134 0.82 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_11 - 1588 DUF258 PF03193.11 161 4.7e-05 15.5 0.0 1 1 1.3e-06 0.00012 14.1 0.0 14 62 204 253 191 264 0.81 # 8475 # 13238 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_32 - 389 AAA_31 PF13614.1 157 9.3e-10 31.5 0.0 1 2 1.4e-08 1.3e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_32 - 389 AAA_31 PF13614.1 157 9.3e-10 31.5 0.0 2 2 0.00018 0.017 7.9 0.1 110 152 227 268 223 272 0.84 # 30074 # 31240 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_18 - 188 Methyltransf_26 PF13659.1 117 2.4e-14 46.2 0.0 1 1 9e-16 4.3e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_28 - 228 Methyltransf_26 PF13659.1 117 8.2e-12 38.1 0.0 1 2 4.1e-07 2e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_28 - 228 Methyltransf_26 PF13659.1 117 8.2e-12 38.1 0.0 2 2 1.9e-07 9.2e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_18 - 188 MTS PF05175.9 170 8.3e-10 31.1 0.0 1 1 1.2e-11 1.1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 522 DUF2813 PF11398.3 373 3.1e-05 16.0 1.2 1 2 4.6e-06 0.00044 12.2 0.0 11 49 12 51 3 56 0.79 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 522 DUF2813 PF11398.3 373 3.1e-05 16.0 1.2 2 2 0.0067 0.64 1.8 0.0 287 333 279 326 250 333 0.82 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_18 - 188 Methyltrans_SAM PF10672.4 286 0.00087 11.0 0.0 1 1 1.3e-05 0.0012 10.5 0.0 196 261 113 173 100 180 0.78 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_18 - 188 Met_10 PF02475.11 200 0.00049 12.5 0.0 1 1 7e-06 0.00067 12.1 0.0 99 189 48 132 38 145 0.78 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 522 ABC_tran PF00005.22 137 0.00015 14.9 0.0 1 1 4.7e-06 0.00045 13.4 0.0 14 113 27 155 17 158 0.73 # 1373 # 2938 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_16 - 562 K_oxygenase PF13434.1 341 3.5e-06 18.9 0.4 1 3 0.0064 0.61 1.7 0.3 189 223 97 129 86 132 0.76 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 K_oxygenase PF13434.1 341 3.5e-06 18.9 0.4 2 3 1.9e-06 0.00018 13.3 0.0 130 233 217 311 200 342 0.78 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 K_oxygenase PF13434.1 341 3.5e-06 18.9 0.4 3 3 0.019 1.8 0.1 0.0 129 160 333 366 313 378 0.68 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_28 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.5 0.0 1 2 0.00041 0.039 6.1 0.0 112 146 18 54 8 81 0.66 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_28 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.5 0.0 2 2 4e-05 0.0038 9.4 0.0 41 62 162 183 145 218 0.78 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 2_16 - 562 FAD_oxidored PF12831.2 428 2.2e-06 19.7 4.0 1 2 2.3e-08 2.2e-06 19.7 4.0 2 41 101 139 100 159 0.83 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 FAD_oxidored PF12831.2 428 2.2e-06 19.7 4.0 2 2 0.021 2 0.2 0.0 85 119 306 339 260 364 0.71 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 DAO PF01266.19 358 8.7e-11 34.0 10.4 1 2 4.6e-08 4.4e-06 18.6 1.4 2 35 101 134 100 161 0.85 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 DAO PF01266.19 358 8.7e-11 34.0 10.4 2 2 1.1e-08 1.1e-06 20.6 0.9 151 205 314 367 302 479 0.80 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_18 - 188 Methyltransf_31 PF13847.1 152 5.9e-07 22.0 0.0 1 1 7.6e-09 7.2e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_1 - 341 Viral_helicase1 PF01443.13 234 6.2e-12 38.3 0.1 1 2 1.9e-07 1.8e-05 17.1 0.0 2 30 5 38 4 59 0.76 # 366 # 1388 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_1 - 341 Viral_helicase1 PF01443.13 234 6.2e-12 38.3 0.1 2 2 7.2e-08 6.8e-06 18.5 0.1 63 233 133 330 122 331 0.67 # 366 # 1388 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 2_16 - 562 Pyr_redox PF00070.22 80 1.6e-19 63.0 4.9 1 2 2.2e-06 0.00021 14.6 1.2 2 31 101 130 100 132 0.95 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 Pyr_redox PF00070.22 80 1.6e-19 63.0 4.9 2 2 3.3e-17 3.2e-15 49.2 0.1 1 70 272 340 272 351 0.90 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 1_18 - 188 TIGR00755 TIGR00755 256 2.4e-09 29.3 0.0 1 1 3.4e-11 3.2e-09 28.9 0.0 8 105 29 123 25 134 0.90 # 20067 # 20630 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_28 - 228 MethyltransfD12 PF02086.10 260 0.00036 12.8 0.0 1 2 0.014 1.3 1.2 0.0 173 188 16 31 10 92 0.81 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_28 - 228 MethyltransfD12 PF02086.10 260 0.00036 12.8 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 2_16 - 562 AlaDh_PNT_C PF01262.16 168 7.1e-07 21.8 4.6 1 2 1.5e-06 0.00014 14.2 1.3 3 50 81 128 79 131 0.91 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 2_16 - 562 AlaDh_PNT_C PF01262.16 168 7.1e-07 21.8 4.6 2 2 9.9e-05 0.0094 8.3 0.1 19 63 269 313 260 359 0.86 # 10809 # 12494 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.644 3_1 - 341 UvrD-helicase PF00580.16 315 9.4e-09 27.7 0.1 1 2 5.9e-06 0.00056 12.0 0.1 16 69 4 49 2 78 0.83 # 366 # 1388 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 3_1 - 341 UvrD-helicase PF00580.16 315 9.4e-09 27.7 0.1 2 2 2.6e-06 0.00025 13.2 0.0 242 294 115 170 96 174 0.86 # 366 # 1388 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_28 - 228 Methyltransf_15 PF09445.5 164 0.00076 11.9 0.0 1 2 0.045 4.3 -0.3 0.0 53 79 4 29 2 32 0.90 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 1_28 - 228 Methyltransf_15 PF09445.5 164 0.00076 11.9 0.0 2 2 4.2e-05 0.004 9.5 0.0 3 31 166 194 164 209 0.86 # 26353 # 27036 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.563 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e4d53cc8-87f0-4431-b7f0-0c1a54cbfecd # Target file: checkm_output/bins/pm1224/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1224/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e4d53cc8-87f0-4431-b7f0-0c1a54cbfecd checkm_output/bins/pm1224/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:37 2020 # [ok]