# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_7 - 228 UPF0020 PF01170.13 180 7.1e-06 19.0 0.0 1 2 0.00012 0.016 8.1 0.0 102 118 16 32 5 84 0.82 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_7 - 228 UPF0020 PF01170.13 180 7.1e-06 19.0 0.0 2 2 6.2e-05 0.0081 9.0 0.0 28 54 163 189 158 221 0.67 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_18 - 341 cobW PF02492.14 178 0.0011 11.8 0.0 1 1 1.4e-05 0.0018 11.0 0.0 4 30 5 31 3 53 0.72 # 14558 # 15580 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.541 4_10 - 389 MipZ PF09140.6 261 5.8e-06 18.8 0.4 1 2 3.5e-06 0.00046 12.6 0.0 2 47 108 153 107 157 0.87 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 4_10 - 389 MipZ PF09140.6 261 5.8e-06 18.8 0.4 2 2 0.0011 0.15 4.3 0.0 88 134 224 270 198 292 0.84 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 7_8 - 151 SSB PF00436.20 104 2.3e-41 133.2 0.4 1 1 2.1e-43 2.8e-41 133.0 0.4 1 101 6 109 6 112 0.96 # 5925 # 6377 # -1 # ID=7_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_10 - 1757 UvrD_C_2 PF13538.1 104 5.8e-08 26.2 1.0 1 2 0.023 1.5 2.4 0.0 6 45 1227 1266 1223 1294 0.75 # 6847 # 12117 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 1757 UvrD_C_2 PF13538.1 104 5.8e-08 26.2 1.0 2 2 2.8e-08 1.9e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 6847 # 12117 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 4_18 - 341 UvrD_C_2 PF13538.1 104 0.0001 15.8 0.0 1 1 3e-06 0.0002 14.8 0.0 37 103 247 329 224 330 0.65 # 14558 # 15580 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_31 - 876 DUF87 PF01935.12 229 5e-07 23.0 0.0 1 1 2.3e-08 1.5e-06 21.4 0.0 26 221 482 668 468 676 0.74 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_34 - 107 DUF87 PF01935.12 229 9.6e-05 15.5 0.0 1 1 2.4e-06 0.00016 14.9 0.0 25 50 74 99 72 103 0.91 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 4_18 - 341 AAA_22 PF13401.1 131 4.4e-05 16.9 0.0 1 1 4.7e-06 0.00031 14.2 0.0 8 111 5 155 4 167 0.75 # 14558 # 15580 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_34 - 107 AAA_22 PF13401.1 131 0.00013 15.4 0.0 1 1 3.5e-06 0.00023 14.6 0.0 3 27 71 95 66 103 0.86 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 2_2 - 567 DNA_methylase PF00145.12 335 3.7e-79 259.5 0.0 1 1 7.6e-81 1e-78 258.1 0.0 1 331 185 546 185 549 0.86 # 1491 # 3191 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 4_17 - 522 AAA_15 PF13175.1 415 4.4e-17 55.4 0.1 1 2 3.4e-09 2.2e-07 23.5 0.0 2 45 5 47 4 63 0.90 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 4_17 - 522 AAA_15 PF13175.1 415 4.4e-17 55.4 0.1 2 2 3.3e-11 2.2e-09 30.1 0.1 332 414 235 318 183 319 0.74 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 3_2 - 276 AAA_15 PF13175.1 415 2.6e-07 23.2 0.0 1 2 3e-05 0.002 10.5 0.0 23 42 34 53 19 86 0.82 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_15 PF13175.1 415 2.6e-07 23.2 0.0 2 2 2.4e-05 0.0016 10.8 0.0 370 410 160 200 151 202 0.91 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_7 - 228 N6_N4_Mtase PF01555.13 231 7.8e-36 116.9 0.0 1 1 5.5e-35 7.3e-33 107.2 0.0 1 228 21 200 21 203 0.90 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_13 - 718 AAA_17 PF13207.1 121 0.00039 14.6 0.0 1 1 9.6e-06 0.0013 12.9 0.0 3 27 189 217 187 284 0.70 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 3_2 - 276 AAA_21 PF13304.1 303 9.6e-18 58.4 0.0 1 2 2.6e-09 1.7e-07 24.7 0.0 1 25 35 63 35 100 0.77 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_21 PF13304.1 303 9.6e-18 58.4 0.0 2 2 1.7e-11 1.1e-09 31.9 0.0 232 298 138 201 107 203 0.84 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_17 - 522 AAA_21 PF13304.1 303 8.2e-14 45.5 0.1 1 2 1.4e-06 9.4e-05 15.7 0.0 2 24 27 49 27 76 0.83 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 4_17 - 522 AAA_21 PF13304.1 303 8.2e-14 45.5 0.1 2 2 4.1e-10 2.7e-08 27.3 0.2 261 301 280 318 243 320 0.90 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 1_31 - 876 MobB PF03205.9 140 0.00034 13.6 0.2 1 2 5.4e-05 0.0036 10.3 0.0 4 37 483 515 481 523 0.79 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_31 - 876 MobB PF03205.9 140 0.00034 13.6 0.2 2 2 0.069 4.5 0.3 0.0 25 64 695 732 690 744 0.86 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_13 - 718 MobB PF03205.9 140 0.0012 11.8 0.0 1 1 5.1e-05 0.0034 10.4 0.0 7 34 192 219 188 225 0.89 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 4_10 - 389 ArsA_ATPase PF02374.10 305 2.3e-06 20.1 0.4 1 2 1.7e-06 0.00022 13.6 0.1 9 36 115 142 109 151 0.89 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 4_10 - 389 ArsA_ATPase PF02374.10 305 2.3e-06 20.1 0.4 2 2 0.0011 0.15 4.3 0.0 123 136 231 244 221 251 0.84 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_34 - 107 T2SE PF00437.15 272 6.7e-05 15.2 0.0 1 1 5.5e-07 7.3e-05 15.0 0.0 107 154 54 98 22 103 0.79 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 107 Zeta_toxin PF06414.7 201 0.00017 14.0 0.0 1 1 3.6e-06 0.00024 13.5 0.0 14 39 70 95 59 102 0.80 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_13 - 718 Zeta_toxin PF06414.7 201 0.00087 11.7 0.0 1 1 6.8e-05 0.0045 9.4 0.0 21 49 190 219 182 236 0.85 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 4_17 - 522 SMC_N PF02463.14 220 3.3e-11 36.1 0.0 1 2 2.8e-11 1.8e-09 30.4 0.0 2 69 4 67 3 79 0.85 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 4_17 - 522 SMC_N PF02463.14 220 3.3e-11 36.1 0.0 2 2 0.0047 0.31 3.5 0.0 163 204 281 321 253 330 0.85 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 3_2 - 276 SMC_N PF02463.14 220 2.9e-08 26.4 0.2 1 1 1.1e-09 7.4e-08 25.1 0.2 25 198 34 201 22 218 0.75 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_10 - 389 VirC1 PF07015.6 231 8.8e-05 14.9 0.1 1 2 0.00028 0.037 6.3 0.0 4 42 109 147 107 154 0.91 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 4_10 - 389 VirC1 PF07015.6 231 8.8e-05 14.9 0.1 2 2 0.0003 0.04 6.2 0.1 84 139 235 290 222 312 0.77 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_13 - 718 AAA_16 PF13191.1 185 6.3e-06 19.6 0.0 1 1 5.9e-07 2.6e-05 17.6 0.0 21 60 182 222 179 263 0.81 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_34 - 107 AAA_16 PF13191.1 185 8e-06 19.2 0.0 1 1 4.3e-07 1.9e-05 18.0 0.0 22 51 70 99 63 104 0.90 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_2 - 276 AAA_16 PF13191.1 185 0.00029 14.1 0.2 1 1 1.6e-05 0.0007 12.9 0.0 12 63 23 74 16 92 0.72 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_17 - 522 AAA_23 PF13476.1 202 4.4e-12 40.0 0.0 1 1 3.2e-13 2.1e-11 37.8 0.0 1 53 6 58 6 115 0.85 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 3_2 - 276 AAA_23 PF13476.1 202 1.4e-05 18.7 0.2 1 1 3.8e-07 2.5e-05 17.9 0.2 21 40 35 54 22 64 0.86 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_13 PF13166.1 712 0.0016 10.2 0.1 1 2 0.00076 0.1 4.2 0.2 23 36 40 53 29 66 0.83 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_13 PF13166.1 712 0.0016 10.2 0.1 2 2 0.001 0.14 3.8 0.0 529 572 162 203 152 210 0.90 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_10 - 389 CbiA PF01656.18 195 1.3e-36 119.1 0.0 1 1 1.3e-38 1.8e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 4_17 - 522 AAA_29 PF13555.1 62 1.3e-07 24.5 0.0 1 1 5.6e-09 2.4e-07 23.5 0.0 2 49 5 50 4 57 0.84 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 3_2 - 276 AAA_29 PF13555.1 62 9.6e-07 21.6 0.2 1 1 5.1e-08 2.3e-06 20.4 0.2 18 44 29 54 14 63 0.83 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_34 - 107 AAA_29 PF13555.1 62 0.0012 11.7 0.9 1 1 4e-05 0.0018 11.2 0.5 23 37 73 86 58 92 0.82 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_13 - 426 Pyr_redox_3 PF13738.1 203 2.9e-18 59.9 0.0 1 2 2e-16 2.6e-14 47.0 0.0 78 200 93 218 64 221 0.87 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 Pyr_redox_3 PF13738.1 203 2.9e-18 59.9 0.0 2 2 2.2e-05 0.0029 10.9 0.0 48 172 234 375 225 381 0.65 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_2 - 276 MMR_HSR1 PF01926.18 116 0.00049 13.4 0.5 1 1 6.4e-06 0.00085 12.6 0.5 2 21 36 55 35 200 0.75 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 DUF258 PF03193.11 161 0.00032 13.2 0.1 1 1 4.3e-06 0.00057 12.4 0.1 25 67 22 65 2 71 0.79 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_13 - 718 TraG-D_C PF12696.2 128 9.9e-21 67.3 0.0 1 1 1.3e-22 1.8e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 4_10 - 389 AAA_31 PF13614.1 157 1.2e-09 31.6 0.0 1 2 1.2e-08 1.6e-06 21.4 0.0 2 49 108 155 107 203 0.88 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 4_10 - 389 AAA_31 PF13614.1 157 1.2e-09 31.6 0.0 2 2 0.00018 0.024 7.9 0.1 110 152 227 268 223 272 0.84 # 7099 # 8265 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_2 - 276 AAA_33 PF13671.1 143 1e-05 18.7 0.1 1 1 3.4e-07 4.4e-05 16.7 0.1 3 33 37 82 35 203 0.61 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_7 - 228 Methyltransf_26 PF13659.1 117 3.2e-12 39.9 0.1 1 2 6.1e-08 8e-06 19.2 0.0 54 114 4 71 2 74 0.71 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_7 - 228 Methyltransf_26 PF13659.1 117 3.2e-12 39.9 0.1 2 2 9.7e-08 1.3e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_10 - 1757 AAA_30 PF13604.1 196 4.1e-44 143.8 14.7 1 2 2e-05 0.00086 12.2 4.1 7 147 420 552 416 562 0.82 # 6847 # 12117 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 1757 AAA_30 PF13604.1 196 4.1e-44 143.8 14.7 2 2 3.3e-43 1.5e-41 135.5 1.3 1 186 968 1156 968 1162 0.94 # 6847 # 12117 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_13 - 718 AAA_30 PF13604.1 196 0.00077 12.4 0.0 1 1 3.8e-05 0.0017 11.3 0.0 21 57 188 224 180 230 0.85 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 3_2 - 276 AAA_30 PF13604.1 196 0.00082 12.3 0.3 1 1 4.4e-05 0.0019 11.0 0.1 15 53 30 68 21 83 0.74 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_34 - 107 FtsK_SpoIIIE PF01580.13 205 2.4e-07 23.7 0.0 1 1 4.4e-09 2.9e-07 23.4 0.0 9 66 41 100 34 103 0.81 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_31 - 876 FtsK_SpoIIIE PF01580.13 205 1.3e-05 18.0 0.1 1 2 4.1e-06 0.00027 13.7 0.0 39 63 476 504 463 507 0.84 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_31 - 876 FtsK_SpoIIIE PF01580.13 205 1.3e-05 18.0 0.1 2 2 0.021 1.4 1.6 0.0 75 166 530 625 529 640 0.80 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 4_17 - 522 DUF2813 PF11398.3 373 4.3e-05 16.0 1.2 1 2 4.6e-06 0.00061 12.2 0.0 11 49 12 51 3 56 0.79 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 4_17 - 522 DUF2813 PF11398.3 373 4.3e-05 16.0 1.2 2 2 0.0067 0.88 1.8 0.0 287 333 279 326 250 333 0.82 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 3_13 - 426 Lycopene_cycl PF05834.7 374 3.6e-05 16.0 0.0 1 1 4.5e-07 5.9e-05 15.3 0.0 1 144 6 157 6 182 0.73 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_2 - 276 ABC_tran PF00005.22 137 5e-30 97.9 0.0 1 1 1.1e-31 7.3e-30 97.4 0.0 1 136 23 170 23 171 0.89 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_17 - 522 ABC_tran PF00005.22 137 0.00021 14.9 0.0 1 1 9.4e-06 0.00062 13.4 0.0 14 113 27 155 17 158 0.73 # 13008 # 14573 # 1 # ID=4_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 3_13 - 426 K_oxygenase PF13434.1 341 4e-118 387.5 0.0 1 1 3.6e-120 4.8e-118 387.2 0.0 2 340 4 333 3 334 0.96 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 4_7 - 228 Cons_hypoth95 PF03602.10 183 2.3e-06 20.4 0.0 1 2 5.6e-05 0.0074 9.0 0.0 112 170 18 78 5 83 0.79 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_7 - 228 Cons_hypoth95 PF03602.10 183 2.3e-06 20.4 0.0 2 2 4e-05 0.0053 9.4 0.0 41 62 162 183 145 218 0.78 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_10 - 1757 AAA_19 PF13245.1 76 3.3e-07 23.3 3.1 1 1 4.5e-09 5.9e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 6847 # 12117 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_31 - 876 AAA_10 PF12846.2 304 3.5e-49 161.1 0.0 1 1 1.8e-50 5.9e-49 160.4 0.0 1 294 479 768 479 774 0.89 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_13 - 718 AAA_10 PF12846.2 304 1.7e-10 34.1 0.0 1 1 9.6e-11 3.2e-09 29.9 0.0 3 296 187 494 186 499 0.69 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_34 - 107 AAA_10 PF12846.2 304 3.6e-06 19.8 0.0 1 2 0.0064 0.21 4.2 0.0 272 290 20 42 6 55 0.77 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 107 AAA_10 PF12846.2 304 3.6e-06 19.8 0.0 2 2 6.6e-06 0.00022 14.0 0.0 2 24 73 95 72 100 0.87 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_2 - 276 AAA_10 PF12846.2 304 0.00024 13.9 1.4 1 2 4e-05 0.0013 11.4 1.0 4 34 36 66 33 159 0.89 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_10 PF12846.2 304 0.00024 13.9 1.4 2 2 0.081 2.7 0.6 0.0 242 266 181 205 170 210 0.87 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 SbcCD_C PF13558.1 90 8.9e-07 22.1 0.0 1 1 4.8e-08 6.3e-06 19.4 0.0 26 89 136 186 119 187 0.79 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_18 - 341 Viral_helicase1 PF01443.13 234 8.5e-12 38.3 0.1 1 2 1.9e-07 2.6e-05 17.1 0.0 2 30 5 38 4 59 0.76 # 14558 # 15580 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.541 4_18 - 341 Viral_helicase1 PF01443.13 234 8.5e-12 38.3 0.1 2 2 7.2e-08 9.5e-06 18.5 0.1 63 233 133 330 122 331 0.67 # 14558 # 15580 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_13 - 426 FMO-like PF00743.14 532 3.6e-06 18.6 0.0 1 2 3.9e-06 0.00051 11.5 0.0 142 200 143 198 95 219 0.87 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 FMO-like PF00743.14 532 3.6e-06 18.6 0.0 2 2 0.00035 0.046 5.1 0.0 317 342 319 344 311 377 0.81 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 NAD_binding_9 PF13454.1 156 4.6e-09 29.5 0.0 1 3 5.8e-08 7.6e-06 19.1 0.0 3 155 10 151 7 152 0.68 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 NAD_binding_9 PF13454.1 156 4.6e-09 29.5 0.0 2 3 0.02 2.6 1.1 0.0 2 31 186 214 185 229 0.79 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 NAD_binding_9 PF13454.1 156 4.6e-09 29.5 0.0 3 3 0.00086 0.11 5.5 0.0 116 155 287 332 254 333 0.73 # 11491 # 12768 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_13 - 718 TrwB_AAD_bind PF10412.4 386 2.8e-150 493.5 0.0 1 1 7.8e-152 3.4e-150 493.2 0.0 2 386 172 561 171 561 0.99 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_31 - 876 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.8 0.1 1 2 7.2e-08 3.2e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_31 - 876 TrwB_AAD_bind PF10412.4 386 5.4e-07 21.8 0.1 2 2 0.061 2.7 -0.3 0.0 261 317 713 769 685 772 0.92 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_34 - 107 TrwB_AAD_bind PF10412.4 386 4.4e-05 15.5 0.0 1 2 0.047 2.1 0.1 0.0 292 335 22 65 16 68 0.74 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 107 TrwB_AAD_bind PF10412.4 386 4.4e-05 15.5 0.0 2 2 2.7e-06 0.00012 14.1 0.0 5 42 62 99 58 103 0.88 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_10 - 1757 AAA_11 PF13086.1 236 0.00012 15.0 1.5 1 1 3.2e-06 0.00043 13.2 0.0 2 72 969 1036 968 1063 0.82 # 6847 # 12117 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_13 - 718 T4SS-DNA_transf PF02534.9 469 9.1e-10 30.9 0.0 1 1 3.9e-11 2.5e-09 29.4 0.0 264 361 382 476 198 500 0.83 # 12833 # 14986 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_31 - 876 T4SS-DNA_transf PF02534.9 469 7.7e-05 14.6 0.0 1 2 0.00085 0.056 5.2 0.0 105 185 533 607 470 623 0.86 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_31 - 876 T4SS-DNA_transf PF02534.9 469 7.7e-05 14.6 0.0 2 2 0.00022 0.015 7.1 0.0 319 378 711 769 664 771 0.91 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_34 - 107 AAA_32 PF13654.1 509 0.0017 10.3 0.0 1 1 1.4e-05 0.0019 10.1 0.0 28 63 70 105 52 106 0.79 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 4_7 - 228 MethyltransfD12 PF02086.10 260 0.00039 13.2 0.0 1 2 0.0097 1.3 1.7 0.0 175 189 18 32 9 94 0.77 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_7 - 228 MethyltransfD12 PF02086.10 260 0.00039 13.2 0.0 2 2 4e-05 0.0053 9.5 0.0 20 46 163 189 148 197 0.78 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_34 - 107 Pox_A32 PF04665.7 241 1.2e-05 17.9 0.0 1 2 0.03 2 0.9 0.0 2 29 41 67 40 71 0.77 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_34 - 107 Pox_A32 PF04665.7 241 1.2e-05 17.9 0.0 2 2 6.9e-07 4.6e-05 16.1 0.0 7 42 66 101 60 104 0.89 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_31 - 876 Pox_A32 PF04665.7 241 0.0011 11.5 0.0 1 1 4.6e-05 0.003 10.1 0.0 7 38 473 504 469 519 0.85 # 28395 # 31022 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 3_14 - 733 Plug PF07715.10 108 5.3e-20 65.1 2.2 1 1 4.8e-22 6.3e-20 64.9 0.6 3 107 44 145 42 146 0.94 # 12853 # 15051 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_34 - 107 RNA_helicase PF00910.17 107 7e-05 16.3 0.0 1 1 1.1e-06 0.00015 15.3 0.0 1 29 75 103 75 106 0.91 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 4_18 - 341 UvrD-helicase PF00580.16 315 1.3e-08 27.7 0.1 1 2 5.9e-06 0.00078 12.0 0.1 16 69 4 49 2 78 0.83 # 14558 # 15580 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.541 4_18 - 341 UvrD-helicase PF00580.16 315 1.3e-08 27.7 0.1 2 2 2.6e-06 0.00034 13.2 0.0 242 294 115 170 96 174 0.86 # 14558 # 15580 # 1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_34 - 107 NACHT PF05729.7 166 0.0013 11.7 0.0 1 1 1.6e-05 0.0021 11.0 0.0 3 28 75 100 74 105 0.86 # 32294 # 32614 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_2 - 276 AAA_25 PF13481.1 194 0.00086 12.0 0.1 1 1 2.2e-05 0.0029 10.3 0.1 30 57 30 57 23 87 0.85 # 1213 # 2040 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 4_7 - 228 Methyltransf_15 PF09445.5 164 0.00025 13.9 0.0 1 2 0.008 1.1 2.1 0.0 53 79 4 29 2 33 0.92 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 4_7 - 228 Methyltransf_15 PF09445.5 164 0.00025 13.9 0.0 2 2 4.2e-05 0.0056 9.5 0.0 3 31 166 194 164 209 0.86 # 3421 # 4104 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/da92487d-9bf2-4c25-845e-cb65732910ff # Target file: checkm_output/bins/pm1214/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1214/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/da92487d-9bf2-4c25-845e-cb65732910ff checkm_output/bins/pm1214/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:30 2020 # [ok]