# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 188 Methyltransf_12 PF08242.7 99 1.4e-05 18.9 0.0 1 1 1.7e-07 2.4e-05 18.2 0.0 1 99 55 144 55 144 0.86 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_14 - 228 UPF0020 PF01170.13 180 7.5e-06 19.0 0.0 1 2 0.00012 0.017 8.1 0.0 102 118 16 32 5 84 0.82 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_14 - 228 UPF0020 PF01170.13 180 7.5e-06 19.0 0.0 2 2 6.2e-05 0.0087 9.0 0.0 28 54 163 189 158 221 0.67 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_3 - 341 cobW PF02492.14 178 0.0011 11.8 0.0 1 1 1.4e-05 0.002 11.0 0.0 4 30 5 31 3 53 0.72 # 366 # 1388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_23 - 188 RrnaAD PF00398.15 262 7.5e-09 28.3 0.0 1 1 6.9e-11 9.7e-09 28.0 0.0 9 113 29 128 24 148 0.89 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_11 - 389 MipZ PF09140.6 261 6.2e-06 18.8 0.4 1 2 3.5e-06 0.0005 12.6 0.0 2 47 108 153 107 157 0.87 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_11 - 389 MipZ PF09140.6 261 6.2e-06 18.8 0.4 2 2 0.0011 0.16 4.3 0.0 88 134 224 270 198 292 0.84 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_25 - 151 SSB PF00436.20 104 2.4e-41 133.2 0.4 1 1 2.1e-43 2.9e-41 133.0 0.4 1 101 6 109 6 112 0.96 # 19725 # 20177 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_23 - 188 Methyltransf_18 PF12847.2 112 7.9e-11 36.0 0.0 1 1 1.2e-12 1.7e-10 34.9 0.0 4 109 53 146 50 148 0.89 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_71 - 1757 UvrD_C_2 PF13538.1 104 6.2e-08 26.2 1.0 1 2 0.023 1.6 2.4 0.0 6 45 1227 1266 1223 1294 0.75 # 55206 # 60476 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_71 - 1757 UvrD_C_2 PF13538.1 104 6.2e-08 26.2 1.0 2 2 2.8e-08 2e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 55206 # 60476 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_3 - 341 UvrD_C_2 PF13538.1 104 0.00011 15.8 0.0 1 1 3e-06 0.00021 14.8 0.0 37 103 247 329 224 330 0.65 # 366 # 1388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_50 - 876 DUF87 PF01935.12 229 5.4e-07 23.0 0.0 1 1 2.3e-08 1.6e-06 21.4 0.0 26 221 482 668 468 676 0.74 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_47 - 107 DUF87 PF01935.12 229 0.0001 15.5 0.0 1 1 2.4e-06 0.00017 14.9 0.0 25 50 74 99 72 103 0.91 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_3 - 341 AAA_22 PF13401.1 131 4.7e-05 16.9 0.0 1 1 4.7e-06 0.00033 14.2 0.0 8 111 5 155 4 167 0.75 # 366 # 1388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_47 - 107 AAA_22 PF13401.1 131 0.00014 15.4 0.0 1 1 3.5e-06 0.00024 14.6 0.0 3 27 71 95 66 103 0.86 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 2_2 - 478 DNA_methylase PF00145.12 335 3e-79 259.9 0.0 1 1 4.4e-81 6.3e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 1491 # 2924 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_4 - 522 AAA_15 PF13175.1 415 4.7e-17 55.4 0.1 1 2 3.4e-09 2.4e-07 23.5 0.0 2 45 5 47 4 63 0.90 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 522 AAA_15 PF13175.1 415 4.7e-17 55.4 0.1 2 2 3.3e-11 2.3e-09 30.1 0.1 332 414 235 318 183 319 0.74 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 276 AAA_15 PF13175.1 415 2.8e-07 23.2 0.0 1 2 3e-05 0.0021 10.5 0.0 23 42 34 53 19 86 0.82 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_15 PF13175.1 415 2.8e-07 23.2 0.0 2 2 2.4e-05 0.0017 10.8 0.0 370 410 160 200 151 202 0.91 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_14 - 228 N6_N4_Mtase PF01555.13 231 8.4e-36 116.9 0.0 1 1 5.5e-35 7.8e-33 107.2 0.0 1 228 21 200 21 203 0.90 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_68 - 718 AAA_17 PF13207.1 121 0.00042 14.6 0.0 1 1 9.6e-06 0.0014 12.9 0.0 3 27 189 217 187 284 0.70 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 3_2 - 276 AAA_21 PF13304.1 303 1e-17 58.4 0.0 1 2 2.6e-09 1.8e-07 24.7 0.0 1 25 35 63 35 100 0.77 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_21 PF13304.1 303 1e-17 58.4 0.0 2 2 1.7e-11 1.2e-09 31.9 0.0 232 298 138 201 107 203 0.84 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 522 AAA_21 PF13304.1 303 8.8e-14 45.5 0.1 1 2 1.4e-06 0.0001 15.7 0.0 2 24 27 49 27 76 0.83 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 522 AAA_21 PF13304.1 303 8.8e-14 45.5 0.1 2 2 4.1e-10 2.9e-08 27.3 0.2 261 301 280 318 243 320 0.90 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_50 - 876 MobB PF03205.9 140 0.00037 13.6 0.2 1 2 5.4e-05 0.0038 10.3 0.0 4 37 483 515 481 523 0.79 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_50 - 876 MobB PF03205.9 140 0.00037 13.6 0.2 2 2 0.069 4.9 0.3 0.0 25 64 695 732 690 744 0.86 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_68 - 718 MobB PF03205.9 140 0.0013 11.8 0.0 1 1 5.1e-05 0.0036 10.4 0.0 7 34 192 219 188 225 0.89 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_11 - 389 ArsA_ATPase PF02374.10 305 2.5e-06 20.1 0.4 1 2 1.7e-06 0.00023 13.6 0.1 9 36 115 142 109 151 0.89 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_11 - 389 ArsA_ATPase PF02374.10 305 2.5e-06 20.1 0.4 2 2 0.0011 0.16 4.3 0.0 123 136 231 244 221 251 0.84 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_47 - 107 T2SE PF00437.15 272 7.1e-05 15.2 0.0 1 1 5.5e-07 7.7e-05 15.0 0.0 107 154 54 98 22 103 0.79 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_47 - 107 Zeta_toxin PF06414.7 201 0.00018 14.0 0.0 1 1 3.6e-06 0.00026 13.5 0.0 14 39 70 95 59 102 0.80 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_68 - 718 Zeta_toxin PF06414.7 201 0.00093 11.7 0.0 1 1 6.8e-05 0.0048 9.4 0.0 21 49 190 219 182 236 0.85 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_4 - 522 SMC_N PF02463.14 220 3.5e-11 36.1 0.0 1 2 2.8e-11 2e-09 30.4 0.0 2 69 4 67 3 79 0.85 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 522 SMC_N PF02463.14 220 3.5e-11 36.1 0.0 2 2 0.0047 0.33 3.5 0.0 163 204 281 321 253 330 0.85 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 276 SMC_N PF02463.14 220 3.1e-08 26.4 0.2 1 1 1.1e-09 7.9e-08 25.1 0.2 25 198 34 201 22 218 0.75 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_11 - 389 VirC1 PF07015.6 231 9.4e-05 14.9 0.1 1 2 0.00028 0.04 6.3 0.0 4 42 109 147 107 154 0.91 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_11 - 389 VirC1 PF07015.6 231 9.4e-05 14.9 0.1 2 2 0.0003 0.042 6.2 0.1 84 139 235 290 222 312 0.77 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_68 - 718 AAA_16 PF13191.1 185 6.7e-06 19.6 0.0 1 1 5.9e-07 2.8e-05 17.6 0.0 21 60 182 222 179 263 0.81 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_47 - 107 AAA_16 PF13191.1 185 8.5e-06 19.2 0.0 1 1 4.3e-07 2e-05 18.0 0.0 22 51 70 99 63 104 0.90 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_2 - 276 AAA_16 PF13191.1 185 0.00031 14.1 0.2 1 1 1.6e-05 0.00075 12.9 0.0 12 63 23 74 16 92 0.72 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 522 AAA_23 PF13476.1 202 4.7e-12 40.0 0.0 1 1 3.2e-13 2.3e-11 37.8 0.0 1 53 6 58 6 115 0.85 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 276 AAA_23 PF13476.1 202 1.5e-05 18.7 0.2 1 1 3.8e-07 2.7e-05 17.9 0.2 21 40 35 54 22 64 0.86 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_13 PF13166.1 712 0.0017 10.2 0.1 1 2 0.00076 0.11 4.2 0.2 23 36 40 53 29 66 0.83 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_13 PF13166.1 712 0.0017 10.2 0.1 2 2 0.001 0.15 3.8 0.0 529 572 162 203 152 210 0.90 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_11 - 389 CbiA PF01656.18 195 1.4e-36 119.1 0.0 1 1 1.3e-38 1.9e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_4 - 522 AAA_29 PF13555.1 62 1.3e-07 24.5 0.0 1 1 5.6e-09 2.6e-07 23.5 0.0 2 49 5 50 4 57 0.84 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_2 - 276 AAA_29 PF13555.1 62 1e-06 21.6 0.2 1 1 5.1e-08 2.4e-06 20.4 0.2 18 44 29 54 14 63 0.83 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_47 - 107 AAA_29 PF13555.1 62 0.0013 11.7 0.9 1 1 4e-05 0.0019 11.2 0.5 23 37 73 86 58 92 0.82 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_13 - 426 Pyr_redox_3 PF13738.1 203 3.1e-18 59.9 0.0 1 2 2e-16 2.8e-14 47.0 0.0 78 200 93 218 64 221 0.87 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 Pyr_redox_3 PF13738.1 203 3.1e-18 59.9 0.0 2 2 2.2e-05 0.0031 10.9 0.0 48 172 234 375 225 381 0.65 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_2 - 276 MMR_HSR1 PF01926.18 116 0.00052 13.4 0.5 1 1 6.4e-06 0.0009 12.6 0.5 2 21 36 55 35 200 0.75 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_23 - 188 N6_Mtase PF02384.11 311 0.00034 13.1 0.0 1 2 3.4e-05 0.0048 9.3 0.0 28 62 32 66 21 75 0.89 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_23 - 188 N6_Mtase PF02384.11 311 0.00034 13.1 0.0 2 2 0.014 2 0.7 0.0 127 137 114 124 103 134 0.82 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 3_2 - 276 DUF258 PF03193.11 161 0.00034 13.2 0.1 1 1 4.3e-06 0.00061 12.4 0.1 25 67 22 65 2 71 0.79 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_68 - 718 TraG-D_C PF12696.2 128 1.1e-20 67.3 0.0 1 1 1.3e-22 1.9e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_11 - 389 AAA_31 PF13614.1 157 1.2e-09 31.6 0.0 1 2 1.2e-08 1.7e-06 21.4 0.0 2 49 108 155 107 203 0.88 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_11 - 389 AAA_31 PF13614.1 157 1.2e-09 31.6 0.0 2 2 0.00018 0.025 7.9 0.1 110 152 227 268 223 272 0.84 # 7681 # 8847 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 3_2 - 276 AAA_33 PF13671.1 143 1.1e-05 18.7 0.1 1 1 3.4e-07 4.7e-05 16.7 0.1 3 33 37 82 35 203 0.61 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_23 - 188 Methyltransf_26 PF13659.1 117 5.9e-14 45.5 0.1 1 1 1.5e-15 1.1e-13 44.7 0.1 2 114 52 147 51 150 0.90 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_14 - 228 Methyltransf_26 PF13659.1 117 3.4e-12 39.9 0.1 1 2 1.2e-07 8.6e-06 19.2 0.0 54 114 4 71 2 74 0.71 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_14 - 228 Methyltransf_26 PF13659.1 117 3.4e-12 39.9 0.1 2 2 1.9e-07 1.4e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_71 - 1757 AAA_30 PF13604.1 196 4.3e-44 143.8 14.7 1 2 2e-05 0.00092 12.2 4.1 7 147 420 552 416 562 0.82 # 55206 # 60476 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_71 - 1757 AAA_30 PF13604.1 196 4.3e-44 143.8 14.7 2 2 3.3e-43 1.6e-41 135.5 1.3 1 186 968 1156 968 1162 0.94 # 55206 # 60476 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_68 - 718 AAA_30 PF13604.1 196 0.00082 12.4 0.0 1 1 3.8e-05 0.0018 11.3 0.0 21 57 188 224 180 230 0.85 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 3_2 - 276 AAA_30 PF13604.1 196 0.00087 12.3 0.3 1 1 4.4e-05 0.0021 11.0 0.1 15 53 30 68 21 83 0.74 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_47 - 107 FtsK_SpoIIIE PF01580.13 205 2.6e-07 23.7 0.0 1 1 4.4e-09 3.1e-07 23.4 0.0 9 66 41 100 34 103 0.81 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_50 - 876 FtsK_SpoIIIE PF01580.13 205 1.4e-05 18.0 0.1 1 2 4.1e-06 0.00029 13.7 0.0 39 63 476 504 463 507 0.84 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_50 - 876 FtsK_SpoIIIE PF01580.13 205 1.4e-05 18.0 0.1 2 2 0.021 1.5 1.6 0.0 75 166 530 625 529 640 0.80 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_23 - 188 MTS PF05175.9 170 5.5e-09 29.0 0.0 1 1 5.5e-11 7.7e-09 28.5 0.0 24 141 45 149 41 166 0.84 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_4 - 522 DUF2813 PF11398.3 373 4.6e-05 16.0 1.2 1 2 4.6e-06 0.00065 12.2 0.0 11 49 12 51 3 56 0.79 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 522 DUF2813 PF11398.3 373 4.6e-05 16.0 1.2 2 2 0.0067 0.94 1.8 0.0 287 333 279 326 250 333 0.82 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_23 - 188 Methyltrans_SAM PF10672.4 286 0.0012 11.0 0.0 1 1 1.2e-05 0.0017 10.6 0.0 196 261 113 173 99 180 0.79 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_23 - 188 Met_10 PF02475.11 200 0.00038 13.5 0.0 1 1 3.6e-06 0.00051 13.0 0.0 94 189 43 132 29 145 0.80 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 3_13 - 426 Lycopene_cycl PF05834.7 374 3.9e-05 16.0 0.0 1 1 4.5e-07 6.4e-05 15.3 0.0 1 144 6 157 6 182 0.73 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_2 - 276 ABC_tran PF00005.22 137 5.3e-30 97.9 0.0 1 1 1.1e-31 7.8e-30 97.4 0.0 1 136 23 170 23 171 0.89 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_4 - 522 ABC_tran PF00005.22 137 0.00022 14.9 0.0 1 1 9.4e-06 0.00067 13.4 0.0 14 113 27 155 17 158 0.73 # 1373 # 2938 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_13 - 426 K_oxygenase PF13434.1 341 4.2e-118 387.5 0.0 1 1 3.6e-120 5.1e-118 387.2 0.0 2 340 4 333 3 334 0.96 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_14 - 228 Cons_hypoth95 PF03602.10 183 2.5e-06 20.4 0.0 1 2 5.6e-05 0.0079 9.0 0.0 112 170 18 78 5 83 0.79 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_14 - 228 Cons_hypoth95 PF03602.10 183 2.5e-06 20.4 0.0 2 2 4e-05 0.0057 9.4 0.0 41 62 162 183 145 218 0.78 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_71 - 1757 AAA_19 PF13245.1 76 3.5e-07 23.3 3.1 1 1 4.5e-09 6.3e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 55206 # 60476 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_50 - 876 AAA_10 PF12846.2 304 3.7e-49 161.1 0.0 1 1 1.8e-50 6.3e-49 160.4 0.0 1 294 479 768 479 774 0.89 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_68 - 718 AAA_10 PF12846.2 304 1.8e-10 34.1 0.0 1 1 9.6e-11 3.4e-09 29.9 0.0 3 296 187 494 186 499 0.69 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_47 - 107 AAA_10 PF12846.2 304 3.9e-06 19.8 0.0 1 2 0.0064 0.22 4.2 0.0 272 290 20 42 6 55 0.77 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_47 - 107 AAA_10 PF12846.2 304 3.9e-06 19.8 0.0 2 2 6.6e-06 0.00023 14.0 0.0 2 24 73 95 72 100 0.87 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_2 - 276 AAA_10 PF12846.2 304 0.00026 13.9 1.4 1 2 4e-05 0.0014 11.4 1.0 4 34 36 66 33 159 0.89 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 AAA_10 PF12846.2 304 0.00026 13.9 1.4 2 2 0.081 2.9 0.6 0.0 242 266 181 205 170 210 0.87 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 276 SbcCD_C PF13558.1 90 9.5e-07 22.1 0.0 1 1 4.8e-08 6.7e-06 19.4 0.0 26 89 136 186 119 187 0.79 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_23 - 188 Methyltransf_31 PF13847.1 152 7.3e-07 22.3 0.0 1 1 6.4e-09 9e-07 22.0 0.0 5 119 52 162 48 183 0.83 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_3 - 341 Viral_helicase1 PF01443.13 234 9.1e-12 38.3 0.1 1 2 1.9e-07 2.7e-05 17.1 0.0 2 30 5 38 4 59 0.76 # 366 # 1388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_3 - 341 Viral_helicase1 PF01443.13 234 9.1e-12 38.3 0.1 2 2 7.2e-08 1e-05 18.5 0.1 63 233 133 330 122 331 0.67 # 366 # 1388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 3_13 - 426 FMO-like PF00743.14 532 3.9e-06 18.6 0.0 1 2 3.9e-06 0.00055 11.5 0.0 142 200 143 198 95 219 0.87 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 FMO-like PF00743.14 532 3.9e-06 18.6 0.0 2 2 0.00035 0.049 5.1 0.0 317 342 319 344 311 377 0.81 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 NAD_binding_9 PF13454.1 156 4.9e-09 29.5 0.0 1 3 5.8e-08 8.1e-06 19.1 0.0 3 155 10 151 7 152 0.68 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 NAD_binding_9 PF13454.1 156 4.9e-09 29.5 0.0 2 3 0.02 2.8 1.1 0.0 2 31 186 214 185 229 0.79 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 426 NAD_binding_9 PF13454.1 156 4.9e-09 29.5 0.0 3 3 0.00086 0.12 5.5 0.0 116 155 287 332 254 333 0.73 # 11612 # 12889 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.472 1_68 - 718 TrwB_AAD_bind PF10412.4 386 3e-150 493.5 0.0 1 1 7.8e-152 3.7e-150 493.2 0.0 2 386 172 561 171 561 0.99 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_50 - 876 TrwB_AAD_bind PF10412.4 386 5.7e-07 21.8 0.1 1 2 7.2e-08 3.4e-06 19.2 0.0 15 53 479 517 470 547 0.80 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_50 - 876 TrwB_AAD_bind PF10412.4 386 5.7e-07 21.8 0.1 2 2 0.061 2.9 -0.3 0.0 261 317 713 769 685 772 0.92 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_47 - 107 TrwB_AAD_bind PF10412.4 386 4.7e-05 15.5 0.0 1 2 0.047 2.2 0.1 0.0 292 335 22 65 16 68 0.74 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_47 - 107 TrwB_AAD_bind PF10412.4 386 4.7e-05 15.5 0.0 2 2 2.7e-06 0.00013 14.1 0.0 5 42 62 99 58 103 0.88 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_71 - 1757 AAA_11 PF13086.1 236 0.00013 15.0 1.5 1 1 3.2e-06 0.00046 13.2 0.0 2 72 969 1036 968 1063 0.82 # 55206 # 60476 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_68 - 718 T4SS-DNA_transf PF02534.9 469 9.7e-10 30.9 0.0 1 1 3.9e-11 2.7e-09 29.4 0.0 264 361 382 476 198 500 0.83 # 52337 # 54490 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.525 1_50 - 876 T4SS-DNA_transf PF02534.9 469 8.2e-05 14.6 0.0 1 2 0.00085 0.06 5.2 0.0 105 185 533 607 470 623 0.86 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_50 - 876 T4SS-DNA_transf PF02534.9 469 8.2e-05 14.6 0.0 2 2 0.00022 0.016 7.1 0.0 319 378 711 769 664 771 0.91 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_47 - 107 AAA_32 PF13654.1 509 0.0018 10.3 0.0 1 1 1.4e-05 0.002 10.1 0.0 28 63 70 105 52 106 0.79 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_23 - 188 TIGR00755 TIGR00755 256 8.5e-09 28.1 0.0 1 1 8.1e-11 1.1e-08 27.7 0.0 8 105 29 123 25 134 0.90 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_14 - 228 MethyltransfD12 PF02086.10 260 0.00042 13.2 0.0 1 2 0.0097 1.4 1.7 0.0 175 189 18 32 9 94 0.77 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_14 - 228 MethyltransfD12 PF02086.10 260 0.00042 13.2 0.0 2 2 4e-05 0.0056 9.5 0.0 20 46 163 189 148 197 0.78 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_47 - 107 Pox_A32 PF04665.7 241 1.3e-05 17.9 0.0 1 2 0.03 2.1 0.9 0.0 2 29 41 67 40 71 0.77 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_47 - 107 Pox_A32 PF04665.7 241 1.3e-05 17.9 0.0 2 2 6.9e-07 4.9e-05 16.1 0.0 7 42 66 101 60 104 0.89 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_50 - 876 Pox_A32 PF04665.7 241 0.0012 11.5 0.0 1 1 4.6e-05 0.0032 10.1 0.0 7 38 473 504 469 519 0.85 # 36301 # 38928 # 1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 3_14 - 733 Plug PF07715.10 108 5.7e-20 65.1 2.2 1 1 4.8e-22 6.8e-20 64.9 0.6 3 107 44 145 42 146 0.94 # 12974 # 15172 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_23 - 188 Methyltransf_23 PF13489.1 161 0.00014 15.1 0.0 1 1 1.1e-06 0.00016 14.8 0.0 11 120 40 153 10 174 0.79 # 18235 # 18798 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_47 - 107 RNA_helicase PF00910.17 107 7.5e-05 16.3 0.0 1 1 1.1e-06 0.00016 15.3 0.0 1 29 75 103 75 106 0.91 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_3 - 341 UvrD-helicase PF00580.16 315 1.4e-08 27.7 0.1 1 2 5.9e-06 0.00083 12.0 0.1 16 69 4 49 2 78 0.83 # 366 # 1388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_3 - 341 UvrD-helicase PF00580.16 315 1.4e-08 27.7 0.1 2 2 2.6e-06 0.00037 13.2 0.0 242 294 115 170 96 174 0.86 # 366 # 1388 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_47 - 107 NACHT PF05729.7 166 0.0014 11.7 0.0 1 1 1.6e-05 0.0022 11.0 0.0 3 28 75 100 74 105 0.86 # 34709 # 35029 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 3_2 - 276 AAA_25 PF13481.1 194 0.00092 12.0 0.1 1 1 2.2e-05 0.0031 10.3 0.1 30 57 30 57 23 87 0.85 # 1334 # 2161 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_14 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.9 0.0 1 2 0.008 1.1 2.1 0.0 53 79 4 29 2 33 0.92 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_14 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.9 0.0 2 2 4.2e-05 0.006 9.5 0.0 3 31 166 194 164 209 0.86 # 11842 # 12525 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3459ea38-2528-459d-a579-d0160dc9462c # Target file: checkm_output/bins/pm1210/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1210/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3459ea38-2528-459d-a579-d0160dc9462c checkm_output/bins/pm1210/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:27 2020 # [ok]