# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_82 - 231 OB_NTP_bind PF07717.11 114 0.0006 12.7 0.0 1 1 7.8e-06 0.00087 12.2 0.0 24 83 28 97 16 158 0.79 # 69378 # 70070 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_36 - 228 UPF0020 PF01170.13 180 1.9e-05 17.3 0.0 1 2 0.00039 0.044 6.4 0.0 104 123 18 37 5 89 0.71 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_36 - 228 UPF0020 PF01170.13 180 1.9e-05 17.3 0.0 2 2 6.2e-05 0.0068 9.0 0.0 28 54 163 189 158 221 0.67 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_65 - 260 IstB_IS21 PF01695.12 178 5e-73 237.3 0.1 1 2 0.049 5.5 -0.6 0.0 64 97 25 57 24 61 0.64 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 IstB_IS21 PF01695.12 178 5e-73 237.3 0.1 2 2 9.8e-75 1.1e-72 236.2 0.1 1 178 56 235 56 235 0.98 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_28 - 215 MipZ PF09140.6 261 2.6e-08 26.2 2.3 1 2 0.0008 0.089 4.8 0.5 7 25 8 26 2 38 0.71 # 21259 # 21903 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_28 - 215 MipZ PF09140.6 261 2.6e-08 26.2 2.3 2 2 9e-09 1e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 21259 # 21903 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_44 - 176 SSB PF00436.20 104 1.6e-40 130.3 0.2 1 1 1.9e-42 2.1e-40 129.9 0.2 1 101 6 109 6 112 0.95 # 32206 # 32733 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 1_87 - 383 DUF87 PF01935.12 229 0.00068 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 28 56 162 191 161 192 0.88 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_65 - 260 AAA_22 PF13401.1 131 1.7e-06 21.3 0.2 1 2 6.7e-05 0.0025 11.0 0.0 5 21 103 119 99 131 0.83 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 AAA_22 PF13401.1 131 1.7e-06 21.3 0.2 2 2 0.0011 0.04 7.1 0.0 88 103 154 181 126 203 0.66 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_87 - 383 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 1 1 7.4e-07 2.7e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_99 - 518 AAA_22 PF13401.1 131 0.00029 14.0 0.0 1 1 1.9e-05 0.00071 12.8 0.0 6 28 227 249 222 330 0.77 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 ATP_bind_1 PF03029.12 238 5.2e-05 15.9 0.0 1 1 7.2e-07 8e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_36 - 228 N6_N4_Mtase PF01555.13 231 8.5e-37 119.9 0.0 1 1 3.4e-36 3.7e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_87 - 383 AAA_17 PF13207.1 121 2.1e-05 18.4 0.1 1 2 4.7e-06 0.00026 14.9 0.0 3 47 161 208 161 251 0.76 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_87 - 383 AAA_17 PF13207.1 121 2.1e-05 18.4 0.1 2 2 0.086 4.8 1.1 0.1 24 113 332 363 274 374 0.60 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_99 - 518 AAA_17 PF13207.1 121 2.4e-05 18.2 0.2 1 1 2.1e-06 0.00011 16.0 0.0 1 24 227 255 227 345 0.72 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 MobB PF03205.9 140 2.1e-05 17.3 0.0 1 2 0.017 1.8 1.3 0.0 14 60 61 108 61 127 0.88 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_87 - 383 MobB PF03205.9 140 2.1e-05 17.3 0.0 2 2 3.1e-06 0.00034 13.4 0.0 5 26 162 183 160 193 0.90 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_65 - 260 PhoH PF02562.11 205 1.2e-07 24.2 0.1 1 1 3.6e-09 3.9e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 AFG1_ATPase PF03969.11 362 8e-05 14.6 0.2 1 1 2.8e-06 0.00031 12.6 0.2 63 216 103 254 43 259 0.72 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_99 - 518 T2SE PF00437.15 272 2.7e-41 134.3 0.1 1 1 9.6e-43 5.3e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 T2SE PF00437.15 272 8.9e-36 116.2 0.0 1 1 2.4e-37 1.3e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_99 - 518 G-alpha PF00503.15 389 0.0007 11.3 0.0 1 2 0.054 6 -1.6 0.0 234 272 70 113 29 117 0.79 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_99 - 518 G-alpha PF00503.15 389 0.0007 11.3 0.0 2 2 1.9e-05 0.0021 9.8 0.0 58 87 225 254 214 325 0.84 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_28 - 215 VirC1 PF07015.6 231 0.00045 12.4 0.0 1 2 0.00073 0.081 5.0 0.0 3 29 3 29 1 36 0.81 # 21259 # 21903 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_28 - 215 VirC1 PF07015.6 231 0.00045 12.4 0.0 2 2 0.00052 0.057 5.5 0.0 87 190 77 181 59 194 0.70 # 21259 # 21903 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_65 - 260 Arch_ATPase PF01637.13 234 0.001 11.8 0.1 1 2 3.4e-05 0.0038 9.9 0.0 8 37 90 119 87 140 0.79 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 Arch_ATPase PF01637.13 234 0.001 11.8 0.1 2 2 0.071 7.9 -0.9 0.0 121 150 167 192 144 203 0.68 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 AAA_16 PF13191.1 185 7.3e-05 15.9 1.1 1 1 8.9e-06 0.00033 13.7 0.1 21 41 99 119 86 151 0.78 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_99 - 518 AAA_16 PF13191.1 185 0.0001 15.4 0.0 1 1 9.6e-06 0.00036 13.6 0.0 8 51 213 252 212 301 0.78 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 AAA_16 PF13191.1 185 0.00032 13.7 0.0 1 1 1.8e-05 0.00068 12.7 0.0 27 52 160 188 148 282 0.82 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_99 - 518 AAA_23 PF13476.1 202 0.00014 15.3 0.2 1 1 9.7e-06 0.00054 13.4 0.0 20 38 226 244 208 249 0.84 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 AAA_23 PF13476.1 202 0.00025 14.5 0.0 1 1 7.3e-06 0.00041 13.8 0.0 19 40 157 178 142 209 0.83 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_87 - 383 AAA_18 PF13238.1 129 1.7e-05 18.2 0.0 1 1 6e-07 3.3e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_99 - 518 AAA_18 PF13238.1 129 0.00036 13.9 0.0 1 1 2.1e-05 0.0012 12.2 0.0 1 18 228 245 228 316 0.86 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_28 - 215 CbiA PF01656.18 195 1.4e-09 30.7 0.1 1 1 1.8e-11 2e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 21259 # 21903 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_65 - 260 AAA_14 PF13173.1 128 1.3e-06 21.4 0.0 1 1 4.5e-08 2.5e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_99 - 518 AAA_14 PF13173.1 128 0.00087 12.3 0.0 1 1 7.4e-05 0.0041 10.1 0.0 5 30 228 254 225 286 0.80 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_99 - 518 AAA_29 PF13555.1 62 3.1e-05 16.5 0.0 1 1 1.7e-06 6.4e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 AAA_29 PF13555.1 62 4.3e-05 16.1 0.0 1 1 3.4e-06 0.00013 14.6 0.0 26 44 160 178 151 186 0.83 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_65 - 260 AAA_29 PF13555.1 62 0.00083 12.0 0.0 1 1 4.3e-05 0.0016 11.1 0.0 19 59 98 139 89 141 0.72 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 AAA PF00004.24 132 2.1e-07 24.3 0.0 1 1 6.3e-09 3.5e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_99 - 518 AAA PF00004.24 132 0.00028 14.2 0.1 1 2 0.00065 0.036 7.3 0.0 1 21 228 248 228 278 0.83 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_99 - 518 AAA PF00004.24 132 0.00028 14.2 0.1 2 2 0.034 1.9 1.8 0.0 9 66 442 508 436 515 0.64 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_65 - 260 Bac_DnaA PF00308.13 219 1.2e-09 31.2 0.0 1 1 1.6e-11 1.8e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 Sigma54_activat PF00158.21 168 0.00015 14.3 0.1 1 1 8.2e-06 0.00091 11.8 0.1 18 53 98 133 82 198 0.72 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 DUF258 PF03193.11 161 1.4e-05 17.3 0.0 1 1 2e-07 2.2e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_60 - 764 TraG-D_C PF12696.2 128 5.8e-07 22.5 0.2 1 1 1.2e-08 1.3e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 46692 # 48983 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_65 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 1 2 0.0016 0.18 4.5 0.1 2 30 105 133 104 153 0.83 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 2 2 0.00025 0.027 7.2 0.0 88 112 157 181 144 204 0.72 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_36 - 228 Methyltransf_26 PF13659.1 117 2e-11 37.1 0.0 1 2 4.2e-07 4.7e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_36 - 228 Methyltransf_26 PF13659.1 117 2e-11 37.1 0.0 2 2 9.7e-08 1.1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_99 - 518 AAA_30 PF13604.1 196 0.00035 13.2 0.0 1 1 5.8e-06 0.00064 12.4 0.0 4 44 211 251 209 276 0.84 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_90 - 195 DNA_pol3_delta PF06144.8 172 2.3e-06 20.3 0.0 1 1 3e-08 3.3e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 77955 # 78539 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_99 - 518 ABC_tran PF00005.22 137 8.3e-05 16.0 0.0 1 1 8e-06 0.0003 14.2 0.0 12 37 226 251 217 288 0.81 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 6.5e-06 0.00024 14.5 0.0 16 35 162 181 152 211 0.87 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_65 - 260 ABC_tran PF00005.22 137 0.00016 15.0 0.3 1 1 3.6e-05 0.0013 12.1 0.0 8 30 99 121 93 136 0.86 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_36 - 228 Cons_hypoth95 PF03602.10 183 2.4e-05 16.9 0.0 1 2 0.00065 0.073 5.5 0.0 114 146 20 54 10 82 0.65 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_36 - 228 Cons_hypoth95 PF03602.10 183 2.4e-05 16.9 0.0 2 2 4e-05 0.0045 9.4 0.0 41 62 162 183 145 218 0.78 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_99 - 518 DAP3 PF10236.4 309 0.00069 11.6 0.0 1 1 1.2e-05 0.0013 10.7 0.0 21 42 223 244 215 253 0.86 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_65 - 260 RuvB_N PF05496.7 234 0.00041 12.5 0.0 1 1 6.5e-06 0.00072 11.7 0.0 50 119 102 182 92 190 0.65 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_99 - 518 AAA_19 PF13245.1 76 0.00011 15.1 0.0 1 1 5.3e-06 0.00029 13.7 0.0 10 46 226 259 218 268 0.79 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_65 - 260 AAA_19 PF13245.1 76 0.00047 13.0 0.0 1 1 2.1e-05 0.0012 11.7 0.0 10 37 103 129 96 154 0.81 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_74 - 1015 AAA_10 PF12846.2 304 1.3e-30 99.9 0.0 1 1 1.3e-31 2.9e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 61236 # 64280 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.509 1_65 - 260 AAA_10 PF12846.2 304 8.7e-06 18.3 0.7 1 1 4.8e-06 0.00011 14.8 0.1 1 33 102 134 102 171 0.89 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_60 - 764 AAA_10 PF12846.2 304 2.9e-05 16.6 1.0 1 1 3.9e-06 8.7e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 46692 # 48983 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_99 - 518 AAA_10 PF12846.2 304 0.00025 13.6 0.0 1 1 2.1e-05 0.00046 12.7 0.0 4 30 228 256 226 320 0.81 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_87 - 383 AAA_10 PF12846.2 304 0.00057 12.4 0.0 1 1 5e-05 0.0011 11.4 0.0 2 21 158 177 157 196 0.83 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_65 - 260 ResIII PF04851.10 184 0.00041 13.3 0.0 1 2 6.9e-05 0.0076 9.1 0.0 8 50 89 127 49 135 0.78 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 ResIII PF04851.10 184 0.00041 13.3 0.0 2 2 0.0088 0.97 2.3 0.0 112 163 131 181 127 202 0.72 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_56 - 283 Methyltransf_27 PF13708.1 194 7.9e-67 217.6 0.0 1 1 9.6e-69 1.1e-66 217.2 0.0 2 194 85 278 84 278 0.96 # 42111 # 42959 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_60 - 764 TrwB_AAD_bind PF10412.4 386 2.5e-06 19.3 0.2 1 2 9.3e-05 0.01 7.4 0.0 11 32 132 153 126 157 0.84 # 46692 # 48983 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_60 - 764 TrwB_AAD_bind PF10412.4 386 2.5e-06 19.3 0.2 2 2 3e-05 0.0033 9.0 0.1 247 332 440 525 427 555 0.88 # 46692 # 48983 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_36 - 228 MethyltransfD12 PF02086.10 260 0.00034 13.1 0.0 1 2 0.011 1.2 1.5 0.0 174 188 17 31 8 90 0.84 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_36 - 228 MethyltransfD12 PF02086.10 260 0.00034 13.1 0.0 2 2 4e-05 0.0044 9.5 0.0 20 46 163 189 148 197 0.78 # 27764 # 28447 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_87 - 383 RNA_helicase PF00910.17 107 0.00011 15.5 0.0 1 1 1.9e-06 0.00021 14.5 0.0 2 28 161 187 160 205 0.83 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_110 - 178 TIGR00922 TIGR00922 172 0.00088 11.9 0.0 1 1 9.5e-06 0.0011 11.6 0.0 47 103 51 109 24 142 0.80 # 97352 # 97885 # -1 # ID=1_110;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.436 1_65 - 260 AAA_25 PF13481.1 194 2.8e-05 16.6 0.0 1 1 1.2e-06 4.6e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_87 - 383 AAA_25 PF13481.1 194 0.00022 13.7 0.0 1 1 1.1e-05 0.00039 12.9 0.0 24 58 148 182 124 207 0.78 # 75142 # 76290 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_99 - 518 AAA_25 PF13481.1 194 0.00031 13.2 0.1 1 2 0.00013 0.0048 9.3 0.0 25 65 217 260 200 270 0.72 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_99 - 518 AAA_25 PF13481.1 194 0.00031 13.2 0.1 2 2 0.058 2.1 0.7 0.0 153 190 297 337 292 340 0.74 # 87698 # 89251 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_65 - 260 AAA_28 PF13521.1 163 0.0013 11.7 1.8 1 2 0.063 7 -0.4 0.1 84 110 35 63 3 82 0.67 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 AAA_28 PF13521.1 163 0.0013 11.7 1.8 2 2 3e-05 0.0033 10.4 0.2 1 43 104 151 104 172 0.70 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 AAA_5 PF07728.9 139 3.2e-05 16.7 0.3 1 2 3.6e-06 0.0004 13.2 0.2 1 74 104 173 104 180 0.72 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_65 - 260 AAA_5 PF07728.9 139 3.2e-05 16.7 0.3 2 2 0.053 5.9 -0.3 0.0 90 123 225 258 218 259 0.63 # 52406 # 53185 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/0c1a9f02-4d1c-4174-9aab-01c657bb86c7 # Target file: checkm_output/bins/pm1200/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1200/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0c1a9f02-4d1c-4174-9aab-01c657bb86c7 checkm_output/bins/pm1200/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:24 2020 # [ok]