# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 693 cobW PF02492.14 178 0.00021 12.8 0.1 1 1 7.6e-06 0.00041 11.9 0.1 4 40 516 553 514 565 0.67 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 Rad17 PF03215.10 519 0.00022 11.9 0.0 1 1 7e-06 0.00038 11.2 0.0 49 102 516 571 511 590 0.77 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_15 - 289 MipZ PF09140.6 261 4.4e-10 31.0 0.0 1 2 1.6e-06 8.4e-05 13.7 0.0 2 39 11 48 10 60 0.92 # 9641 # 10507 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.428 1_15 - 289 MipZ PF09140.6 261 4.4e-10 31.0 0.0 2 2 5.1e-07 2.8e-05 15.3 0.0 61 127 95 162 86 165 0.82 # 9641 # 10507 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.428 1_23 - 374 UvrD_C_2 PF13538.1 104 1e-06 21.0 0.5 1 1 6e-08 3.3e-06 19.3 0.2 55 103 9 58 2 59 0.85 # 15601 # 16722 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.611 1_36 - 693 DUF87 PF01935.12 229 0.00025 12.9 0.0 1 1 8.1e-06 0.00044 12.1 0.0 25 45 514 534 504 545 0.82 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_22 PF13401.1 131 2.1e-07 23.2 0.1 1 2 4.5e-07 2.5e-05 16.5 0.0 6 30 514 538 510 580 0.79 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_22 PF13401.1 131 2.1e-07 23.2 0.1 2 2 0.0044 0.24 3.6 0.0 55 102 612 662 592 684 0.79 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_25 - 244 MutS_V PF00488.16 235 0.00063 11.2 0.0 1 1 1.7e-05 0.00091 10.7 0.0 45 81 61 100 28 110 0.80 # 17304 # 18035 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.593 1_36 - 693 PRK PF00485.13 194 0.00014 13.5 0.1 1 1 4.4e-06 0.00024 12.7 0.1 2 25 515 538 514 562 0.84 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 SRP54 PF00448.17 196 0.00052 11.5 0.1 1 1 1.8e-05 0.00096 10.6 0.1 3 43 514 554 512 563 0.91 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_17 PF13207.1 121 1.9e-07 24.0 0.0 1 1 6.8e-09 3.7e-07 23.1 0.0 2 23 515 536 514 602 0.84 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_21 PF13304.1 303 9e-10 30.9 0.0 1 2 4.6e-09 2.5e-07 22.9 0.0 2 36 515 553 514 580 0.74 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_21 PF13304.1 303 9e-10 30.9 0.0 2 2 0.00095 0.051 5.5 0.0 237 271 623 654 608 661 0.91 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 MobB PF03205.9 140 0.00013 13.7 0.1 1 1 4.6e-06 0.00025 12.8 0.1 3 22 515 534 513 555 0.82 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 T2SE PF00437.15 272 1.5e-05 16.0 0.1 1 1 7.2e-07 3.9e-05 14.7 0.1 124 159 508 543 479 559 0.80 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 SMC_N PF02463.14 220 9.9e-11 33.3 0.1 1 1 2.2e-10 1.2e-08 26.5 0.1 29 209 517 689 504 691 0.63 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_16 PF13191.1 185 3.7e-06 19.1 0.0 1 1 3.1e-07 1.7e-05 16.9 0.0 23 59 511 548 501 672 0.74 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_23 PF13476.1 202 1.2e-05 17.8 0.2 1 1 3.8e-07 2.1e-05 17.0 0.2 21 42 514 535 502 562 0.83 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_18 PF13238.1 129 9.2e-06 18.1 0.1 1 1 3.2e-07 1.7e-05 17.2 0.1 1 20 515 534 515 561 0.81 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_15 - 289 CbiA PF01656.18 195 2.4e-18 58.3 0.0 1 1 5.8e-20 3.1e-18 57.9 0.0 1 160 12 203 12 229 0.81 # 9641 # 10507 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.428 1_36 - 693 AAA_14 PF13173.1 128 5.5e-05 15.1 0.0 1 2 8.3e-06 0.00045 12.2 0.0 4 45 514 555 511 596 0.76 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_14 PF13173.1 128 5.5e-05 15.1 0.0 2 2 0.071 3.9 -0.5 0.0 53 85 631 666 621 684 0.63 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_29 PF13555.1 62 3e-06 18.8 0.1 1 1 1.4e-07 7.6e-06 17.5 0.1 17 40 507 529 501 546 0.80 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA PF00004.24 132 7.8e-07 21.4 0.1 1 1 2.6e-07 1.4e-05 17.3 0.1 3 74 517 656 515 672 0.75 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 DUF258 PF03193.11 161 9e-05 13.7 0.0 1 1 3.7e-06 0.0002 12.6 0.0 24 66 500 543 482 557 0.79 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_15 - 289 AAA_31 PF13614.1 157 9.1e-07 21.0 0.0 1 1 7.2e-08 3.9e-06 18.9 0.0 1 135 10 151 10 171 0.82 # 9641 # 10507 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.428 1_36 - 693 NTPase_1 PF03266.10 168 5.7e-05 14.9 0.1 1 1 2.3e-06 0.00012 13.8 0.1 2 25 515 538 514 561 0.80 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_30 PF13604.1 196 0.00016 13.3 0.0 1 1 5.2e-06 0.00028 12.5 0.0 20 51 514 545 506 555 0.85 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 2_10 - 289 Mg_chelatase_2 PF13335.1 96 0.0024 10.4 3.7 1 2 0.0012 0.063 5.8 0.0 57 74 10 27 5 27 0.89 # 6476 # 7342 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 2_10 - 289 Mg_chelatase_2 PF13335.1 96 0.0024 10.4 3.7 2 2 0.0059 0.32 3.6 0.4 10 38 51 79 35 112 0.74 # 6476 # 7342 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.572 1_36 - 693 ABC_tran PF00005.22 137 2.3e-35 113.9 0.0 1 1 7.5e-37 4e-35 113.1 0.0 2 137 503 651 502 651 0.92 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_19 PF13245.1 76 1e-05 17.3 0.0 1 1 4.1e-07 2.2e-05 16.2 0.0 9 52 512 549 507 557 0.79 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_10 PF12846.2 304 4.8e-06 18.2 0.2 1 2 3.4e-07 1.8e-05 16.3 0.1 3 30 514 541 512 555 0.77 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_10 PF12846.2 304 4.8e-06 18.2 0.2 2 2 0.084 4.5 -1.4 0.0 216 237 636 656 623 667 0.73 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 SbcCD_C PF13558.1 90 0.00057 11.9 0.2 1 1 6.3e-05 0.0034 9.4 0.2 31 80 621 657 602 667 0.73 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 RNA_helicase PF00910.17 107 0.00039 12.7 0.0 1 1 1.5e-05 0.00083 11.6 0.0 1 23 515 537 515 582 0.69 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_24 PF13479.1 213 0.00013 13.6 0.0 1 1 4.6e-06 0.00025 12.7 0.0 6 55 515 561 513 615 0.76 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 NACHT PF05729.7 166 0.00018 13.2 0.1 1 1 6.4e-06 0.00035 12.3 0.1 3 21 515 533 513 541 0.88 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_25 PF13481.1 194 3.1e-05 15.5 0.0 1 1 1.1e-06 6.1e-05 14.5 0.0 30 55 509 534 482 558 0.80 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_28 PF13521.1 163 0.00024 13.1 0.2 1 1 7.7e-06 0.00041 12.3 0.2 2 19 515 532 514 545 0.90 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_36 - 693 AAA_5 PF07728.9 139 0.0005 11.9 0.2 1 1 3.8e-05 0.002 9.9 0.0 4 38 517 552 514 656 0.82 # 24236 # 26314 # -1 # ID=1_36;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/9243684a-a1fd-4c6c-95cc-36ba40aa5ab7 # Target file: checkm_output/bins/pm1193/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1193/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9243684a-a1fd-4c6c-95cc-36ba40aa5ab7 checkm_output/bins/pm1193/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:16 2020 # [ok]