# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_22 - 347 Mg_chelatase PF01078.16 207 3.1e-05 16.9 0.1 1 1 4.5e-07 7.7e-05 15.6 0.0 20 44 122 146 105 158 0.80 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 IstB_IS21 PF01695.12 178 1.5e-65 213.6 0.0 1 1 4.4e-67 3.8e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 IstB_IS21 PF01695.12 178 1.1e-05 18.6 0.0 1 1 2.9e-07 2.5e-05 17.4 0.0 28 70 105 147 90 171 0.79 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 3_11 - 216 MipZ PF09140.6 261 4.9e-17 55.5 0.6 1 2 5.9e-16 5e-14 45.6 0.4 2 143 2 123 1 132 0.85 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 3_11 - 216 MipZ PF09140.6 261 4.9e-17 55.5 0.6 2 2 0.019 1.6 1.3 0.0 214 235 177 198 171 209 0.82 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 4_7 - 402 MipZ PF09140.6 261 3.1e-06 20.1 0.0 1 2 0.0053 0.46 3.1 0.0 3 50 111 163 109 193 0.73 # 5241 # 6446 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 4_7 - 402 MipZ PF09140.6 261 3.1e-06 20.1 0.0 2 2 1.6e-06 0.00014 14.6 0.0 86 136 232 282 220 296 0.87 # 5241 # 6446 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 1_48 - 186 SSB PF00436.20 104 6e-41 132.2 0.2 1 1 8.7e-43 7.4e-41 131.9 0.2 1 99 6 105 6 113 0.95 # 37021 # 37578 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.625 2_30 - 181 SSB PF00436.20 104 1.2e-40 131.3 0.2 1 1 1.7e-42 1.4e-40 131.0 0.2 1 99 6 105 6 113 0.96 # 30527 # 31069 # -1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.632 3_26 - 1754 UvrD_C_2 PF13538.1 104 1.4e-07 25.3 0.2 1 1 5.7e-09 9.7e-07 22.6 0.0 3 102 1340 1443 1336 1445 0.77 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 2_22 - 347 AAA_2 PF07724.9 171 4.9e-07 23.5 0.0 1 1 7.6e-09 1.3e-06 22.1 0.0 5 105 126 220 122 226 0.85 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_20 - 880 DUF87 PF01935.12 229 4.6e-06 20.2 0.0 1 2 0.056 9.5 -0.4 0.2 113 171 312 362 304 396 0.60 # 15969 # 18608 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_20 - 880 DUF87 PF01935.12 229 4.6e-06 20.2 0.0 2 2 1.8e-07 3e-05 17.5 0.0 26 222 484 674 479 681 0.82 # 15969 # 18608 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_6 - 260 AAA_22 PF13401.1 131 2.1e-06 21.6 0.0 1 2 1.2e-05 0.00071 13.4 0.1 4 28 101 125 98 148 0.75 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_6 - 260 AAA_22 PF13401.1 131 2.1e-06 21.6 0.0 2 2 0.0025 0.14 6.0 0.0 77 101 151 178 124 201 0.64 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 AAA_22 PF13401.1 131 1.9e-05 18.5 3.5 1 3 2.6e-05 0.0015 12.4 0.1 7 26 127 146 118 153 0.87 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 AAA_22 PF13401.1 131 1.9e-05 18.5 3.5 2 3 0.014 0.83 3.5 0.0 71 117 167 223 152 238 0.66 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 AAA_22 PF13401.1 131 1.9e-05 18.5 3.5 3 3 0.05 2.9 1.7 0.3 37 112 245 327 207 338 0.72 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 3_26 - 1754 AAA_22 PF13401.1 131 0.00042 14.1 0.0 1 2 0.017 0.98 3.2 0.0 89 121 505 536 468 538 0.72 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 3_26 - 1754 AAA_22 PF13401.1 131 0.00042 14.1 0.0 2 2 0.0012 0.067 7.0 0.0 3 28 986 1011 983 1065 0.79 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 2_13 - 307 Methyltransf_11 PF08241.7 95 3.1e-06 21.3 0.0 1 1 4e-08 6.8e-06 20.2 0.0 49 95 183 229 139 229 0.83 # 12358 # 13278 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 5_6 - 478 DNA_methylase PF00145.12 335 3.8e-79 259.8 0.0 1 1 4.4e-81 7.6e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 4427 # 5860 # -1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 3_11 - 216 SRP54 PF00448.17 196 1.9e-07 24.4 0.2 1 1 1.6e-09 2.8e-07 23.8 0.2 6 98 4 93 1 106 0.87 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 4_19 - 79 AAA_15 PF13175.1 415 1.2e-09 31.4 0.0 1 1 6.8e-12 1.2e-09 31.3 0.0 2 46 5 48 4 65 0.89 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 7_1 - 120 N6_N4_Mtase PF01555.13 231 5.6e-22 72.0 0.0 1 1 1.2e-23 6.7e-22 71.7 0.0 169 227 34 92 14 96 0.92 # 3 # 362 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.642 8_1 - 120 N6_N4_Mtase PF01555.13 231 5.6e-22 72.0 0.0 1 1 1.2e-23 6.7e-22 71.7 0.0 169 227 34 92 14 96 0.92 # 3 # 362 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.644 11_2 - 155 N6_N4_Mtase PF01555.13 231 2.6e-11 37.1 0.0 1 1 5.2e-13 2.9e-11 36.9 0.0 1 113 21 130 21 150 0.85 # 252 # 716 # 1 # ID=11_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_22 - 347 AAA_17 PF13207.1 121 4e-08 27.8 0.0 1 1 2.5e-09 1.4e-07 26.0 0.0 1 55 126 181 126 324 0.69 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AAA_17 PF13207.1 121 0.00066 14.2 0.0 1 1 2e-05 0.0011 13.4 0.0 2 26 104 131 103 216 0.74 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_1 - 424 AAA_17 PF13207.1 121 0.00092 13.7 0.1 1 1 4.9e-05 0.0028 12.1 0.1 3 40 189 224 187 360 0.72 # 3 # 1274 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 4_19 - 79 AAA_21 PF13304.1 303 5.2e-06 20.2 0.0 1 1 3.4e-08 5.9e-06 20.0 0.0 2 24 27 49 26 69 0.82 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 3_11 - 216 ArsA_ATPase PF02374.10 305 2.9e-05 16.9 1.0 1 2 1.9e-05 0.0033 10.1 0.5 7 38 7 38 1 47 0.87 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 3_11 - 216 ArsA_ATPase PF02374.10 305 2.9e-05 16.9 1.0 2 2 0.00054 0.092 5.4 0.0 100 135 50 87 37 90 0.87 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_6 - 260 PhoH PF02562.11 205 5.4e-07 22.7 0.1 1 1 1e-08 8.5e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 PhoH PF02562.11 205 0.001 12.0 0.0 1 1 2.4e-05 0.0021 11.0 0.0 19 40 124 145 103 153 0.77 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AFG1_ATPase PF03969.11 362 0.00052 12.5 0.0 1 1 5.8e-06 0.00099 11.6 0.0 64 214 103 251 81 258 0.78 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 T2SE PF00437.15 272 0.00064 12.3 0.0 1 1 6.4e-06 0.0011 11.5 0.0 101 152 100 148 25 151 0.82 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 SKI PF01202.17 158 0.00067 13.2 0.2 1 2 0.093 16 -1.0 0.1 102 148 56 105 44 118 0.65 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 SKI PF01202.17 158 0.00067 13.2 0.2 2 2 1.8e-05 0.0032 11.0 0.0 1 37 133 171 133 179 0.88 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_19 - 79 G-alpha PF00503.15 389 0.00063 12.1 0.0 1 1 4e-06 0.00068 12.0 0.0 62 106 28 72 17 76 0.82 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 347 Zeta_toxin PF06414.7 201 4.5e-05 16.3 0.0 1 1 6e-07 0.0001 15.1 0.0 14 52 122 159 109 183 0.80 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_19 - 79 SMC_N PF02463.14 220 3.5e-11 36.4 0.0 1 1 2.2e-13 3.8e-11 36.3 0.0 2 73 4 72 3 77 0.86 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 3_11 - 216 VirC1 PF07015.6 231 6.5e-09 28.8 0.1 1 1 5.4e-11 9.3e-09 28.3 0.1 6 150 5 144 1 212 0.77 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 3_11 - 216 Fer4_NifH PF00142.13 273 2.3e-05 17.3 0.2 1 1 3.5e-07 6e-05 16.0 0.1 8 39 9 40 1 49 0.85 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_1 - 424 AAA_16 PF13191.1 185 5e-06 20.2 0.0 1 1 1.9e-07 1.1e-05 19.2 0.0 20 56 181 218 179 255 0.78 # 3 # 1274 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_22 - 347 AAA_16 PF13191.1 185 1.6e-05 18.6 1.1 1 1 8.1e-07 4.6e-05 17.1 0.2 25 81 125 182 101 325 0.81 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AAA_16 PF13191.1 185 2.5e-05 18.0 2.4 1 1 3.6e-06 0.0002 15.0 0.1 23 51 100 128 86 149 0.80 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_19 - 79 AAA_23 PF13476.1 202 6.2e-12 39.9 0.0 1 1 3.7e-14 6.4e-12 39.9 0.0 1 51 6 56 6 73 0.90 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 347 AAA_18 PF13238.1 129 5e-06 20.5 0.2 1 1 1.9e-07 3.2e-05 17.9 0.0 1 75 127 225 127 261 0.62 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 3_11 - 216 CbiA PF01656.18 195 1.6e-21 70.2 0.0 1 1 3.6e-23 2.1e-21 69.9 0.0 2 144 4 128 3 184 0.78 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 4_7 - 402 CbiA PF01656.18 195 1.9e-18 60.2 0.0 1 1 7.6e-20 4.3e-18 59.0 0.0 1 142 111 292 111 327 0.75 # 5241 # 6446 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 2_6 - 260 CbiA PF01656.18 195 0.0016 11.5 0.0 1 1 3.8e-05 0.0021 11.1 0.0 3 42 105 145 104 254 0.75 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 KaiC PF06745.8 227 8.9e-06 18.6 0.0 1 2 1.9e-06 0.00032 13.5 0.0 10 37 115 142 105 147 0.88 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 KaiC PF06745.8 227 8.9e-06 18.6 0.0 2 2 0.0035 0.6 2.8 0.0 122 160 192 231 160 253 0.84 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AAA_14 PF13173.1 128 6.1e-07 23.1 0.0 1 2 3.4e-08 2.9e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_6 - 260 AAA_14 PF13173.1 128 6.1e-07 23.1 0.0 2 2 0.096 8.2 0.0 0.0 14 46 215 247 212 257 0.80 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 AAA_14 PF13173.1 128 0.00028 14.5 0.0 1 1 6.8e-06 0.00058 13.4 0.0 3 99 125 233 123 259 0.71 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 4_19 - 79 AAA_29 PF13555.1 62 1.2e-08 28.1 0.0 1 1 8.6e-11 1.5e-08 27.8 0.0 2 50 5 51 4 57 0.83 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 347 AAA PF00004.24 132 1.3e-32 106.4 0.0 1 2 0.062 5.3 0.9 0.0 76 99 32 55 21 83 0.80 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 AAA PF00004.24 132 1.3e-32 106.4 0.0 2 2 1.8e-33 1.5e-31 103.0 0.0 1 130 127 251 127 253 0.94 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AAA PF00004.24 132 3.6e-08 27.3 0.0 1 1 8.2e-10 7e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_6 - 260 Bac_DnaA PF00308.13 219 8.8e-09 28.9 0.0 1 1 7.8e-11 1.3e-08 28.4 0.0 36 136 103 201 90 209 0.84 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_17 - 134 CobU PF02283.11 167 0.00066 12.8 0.2 1 1 7.1e-06 0.0012 11.9 0.0 64 112 80 129 59 133 0.70 # 14509 # 14910 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_6 - 260 DUF258 PF03193.11 161 0.00036 13.4 0.0 1 1 3.7e-06 0.00063 12.6 0.0 26 59 92 125 80 153 0.82 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_27 - 341 TraG-D_C PF12696.2 128 3.8e-16 52.8 0.0 1 1 3.8e-18 6.6e-16 52.0 0.0 14 127 2 111 1 112 0.87 # 23591 # 24613 # -1 # ID=3_27;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 3_11 - 216 AAA_31 PF13614.1 157 4e-09 30.3 0.2 1 2 9.2e-08 7.9e-06 19.5 0.0 3 42 3 42 1 47 0.89 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 3_11 - 216 AAA_31 PF13614.1 157 4e-09 30.3 0.2 2 2 0.00063 0.054 7.1 0.0 107 137 68 97 58 108 0.77 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 4_7 - 402 AAA_31 PF13614.1 157 0.00017 15.2 0.0 1 1 1.1e-05 0.00094 12.8 0.0 108 147 235 273 231 279 0.86 # 5241 # 6446 # -1 # ID=4_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.467 2_6 - 260 NTPase_1 PF03266.10 168 0.00039 13.8 0.1 1 2 0.0015 0.26 4.6 0.1 2 30 104 132 103 143 0.82 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_6 - 260 NTPase_1 PF03266.10 168 0.00039 13.8 0.1 2 2 0.0003 0.051 6.9 0.0 87 108 155 176 141 202 0.77 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 AAA_33 PF13671.1 143 2.6e-07 24.3 0.0 1 1 4.7e-09 8e-07 22.7 0.0 2 91 127 248 127 267 0.71 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 7_1 - 120 Methyltransf_26 PF13659.1 117 6.8e-06 19.8 0.1 1 1 2.2e-07 9.2e-06 19.4 0.1 4 45 60 100 57 115 0.80 # 3 # 362 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.642 8_1 - 120 Methyltransf_26 PF13659.1 117 6.8e-06 19.8 0.1 1 1 2.2e-07 9.2e-06 19.4 0.1 4 45 60 100 57 115 0.80 # 3 # 362 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.644 11_2 - 155 Methyltransf_26 PF13659.1 117 1.4e-05 18.8 0.0 1 1 6.1e-07 2.6e-05 17.9 0.0 62 113 12 70 3 75 0.70 # 252 # 716 # 1 # ID=11_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 2_13 - 307 Methyltransf_26 PF13659.1 117 0.00061 13.5 0.0 1 1 2e-05 0.00085 13.0 0.0 92 113 188 229 92 233 0.80 # 12358 # 13278 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 3_26 - 1754 AAA_30 PF13604.1 196 4.8e-45 147.2 5.7 1 2 4.7e-07 8e-05 15.9 1.0 9 126 424 536 422 561 0.86 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 3_26 - 1754 AAA_30 PF13604.1 196 4.8e-45 147.2 5.7 2 2 1.7e-42 2.9e-40 131.6 0.3 2 186 971 1158 970 1162 0.94 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 1_20 - 880 FtsK_SpoIIIE PF01580.13 205 0.00019 14.6 0.0 1 1 2.7e-06 0.00046 13.3 0.0 39 63 480 506 466 508 0.85 # 15969 # 18608 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 4_19 - 79 DUF2813 PF11398.3 373 3.1e-05 16.8 0.0 1 1 2.1e-07 3.7e-05 16.6 0.0 11 50 12 52 3 56 0.79 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 347 ABC_tran PF00005.22 137 0.00067 13.6 0.0 1 1 3.9e-05 0.0022 12.0 0.0 8 35 121 148 117 176 0.92 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 ABC_tran PF00005.22 137 0.0009 13.2 0.2 1 1 6.1e-05 0.0035 11.3 0.1 8 31 98 121 95 132 0.86 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 4_19 - 79 ABC_tran PF00005.22 137 0.001 13.1 0.0 1 1 1.8e-05 0.0011 13.0 0.0 15 42 28 55 17 75 0.78 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 7_1 - 120 Cons_hypoth95 PF03602.10 183 0.0011 12.0 0.0 1 1 1.4e-05 0.0012 11.9 0.0 19 71 34 84 27 113 0.73 # 3 # 362 # 1 # ID=7_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.642 8_1 - 120 Cons_hypoth95 PF03602.10 183 0.0011 12.0 0.0 1 1 1.4e-05 0.0012 11.9 0.0 19 71 34 84 27 113 0.73 # 3 # 362 # 1 # ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.644 4_19 - 79 DAP3 PF10236.4 309 0.0015 11.1 0.0 1 1 1e-05 0.0017 10.9 0.0 11 41 12 42 3 47 0.81 # 14651 # 14887 # 1 # ID=4_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 2_22 - 347 RuvB_N PF05496.7 234 5.3e-05 16.0 0.0 1 1 6.7e-07 0.00012 14.9 0.0 51 78 125 152 86 195 0.79 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 AAA_19 PF13245.1 76 1.9e-06 21.3 0.0 1 1 1.1e-07 6.1e-06 19.6 0.0 10 34 125 148 115 186 0.78 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 3_26 - 1754 AAA_19 PF13245.1 76 3.4e-06 20.4 0.4 1 1 6e-08 3.4e-06 20.4 0.4 8 74 984 1047 976 1051 0.71 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 2_6 - 260 AAA_19 PF13245.1 76 0.0011 12.3 0.2 1 1 7.9e-05 0.0045 10.5 0.0 11 35 103 126 95 157 0.81 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_20 - 880 AAA_10 PF12846.2 304 3.6e-46 151.6 0.0 1 1 1e-47 5.8e-46 150.9 0.0 1 294 481 773 481 779 0.86 # 15969 # 18608 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_6 - 260 AAA_10 PF12846.2 304 6.3e-05 16.1 0.2 1 2 0.043 2.5 1.1 0.0 106 155 28 69 4 89 0.61 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_6 - 260 AAA_10 PF12846.2 304 6.3e-05 16.1 0.2 2 2 1.3e-05 0.00075 12.6 0.1 3 35 103 135 101 172 0.84 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_1 - 424 AAA_10 PF12846.2 304 0.00022 14.4 0.0 1 1 7.9e-06 0.00045 13.3 0.0 3 43 187 227 186 244 0.92 # 3 # 1274 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 3_11 - 216 DAO PF01266.19 358 0.0016 11.0 0.0 1 1 1.2e-05 0.002 10.6 0.0 14 111 21 137 16 192 0.84 # 5407 # 6054 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.452 2_22 - 347 ResIII PF04851.10 184 0.0005 13.6 0.0 1 1 6.2e-06 0.0011 12.5 0.0 22 48 119 147 96 191 0.80 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_13 - 307 Methyltransf_31 PF13847.1 152 0.00047 13.4 0.0 1 1 4.8e-06 0.00082 12.7 0.0 66 113 185 234 180 269 0.82 # 12358 # 13278 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_22 - 347 TIP49 PF06068.8 398 6.1e-05 15.5 0.1 1 1 7.4e-07 0.00013 14.4 0.0 42 79 115 151 103 176 0.82 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 1_40 - 292 Methyltransf_27 PF13708.1 194 2.8e-63 206.6 0.0 1 1 2.1e-65 3.7e-63 206.2 0.0 5 194 95 287 91 287 0.93 # 30864 # 31739 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.575 1_1 - 424 TrwB_AAD_bind PF10412.4 386 3.3e-94 309.2 0.0 1 1 7e-96 4e-94 309.0 0.0 2 248 172 423 171 424 0.99 # 3 # 1274 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 3_27 - 341 TrwB_AAD_bind PF10412.4 386 5.4e-44 143.9 0.0 1 1 1.3e-45 7.2e-44 143.5 0.0 256 386 1 131 1 131 0.99 # 23591 # 24613 # -1 # ID=3_27;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_20 - 880 TrwB_AAD_bind PF10412.4 386 2.6e-05 16.6 0.2 1 1 1.2e-06 6.9e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 15969 # 18608 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_26 - 1754 AAA_11 PF13086.1 236 2.4e-05 17.7 2.7 1 2 1.4e-06 0.00012 15.4 0.0 2 75 971 1041 970 1066 0.81 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 3_26 - 1754 AAA_11 PF13086.1 236 2.4e-05 17.7 2.7 2 2 0.068 5.8 0.0 0.0 3 34 1182 1212 1180 1334 0.71 # 18330 # 23591 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.623 2_22 - 347 AAA_11 PF13086.1 236 0.00024 14.4 0.0 1 1 5.8e-06 0.00049 13.3 0.0 14 42 121 153 95 343 0.73 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 Sigma54_activ_2 PF14532.1 138 0.00068 13.4 0.0 1 1 6.3e-06 0.0011 12.7 0.0 9 64 87 144 84 229 0.70 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_27 - 341 T4SS-DNA_transf PF02534.9 469 0.00042 12.6 0.0 1 1 3.5e-06 0.0006 12.1 0.0 317 395 2 79 2 130 0.77 # 23591 # 24613 # -1 # ID=3_27;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_20 - 880 Pox_A32 PF04665.7 241 0.00013 15.0 0.0 1 1 1.5e-06 0.00026 14.0 0.0 6 40 474 508 470 523 0.82 # 15969 # 18608 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_13 - 307 Methyltransf_23 PF13489.1 161 0.00074 12.9 0.0 1 1 7.1e-06 0.0012 12.2 0.0 74 115 186 231 80 253 0.63 # 12358 # 13278 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.550 2_22 - 347 RNA_helicase PF00910.17 107 3.3e-05 17.7 0.0 1 1 4.5e-07 7.7e-05 16.5 0.0 1 106 127 232 127 233 0.82 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_18 - 137 tRNA_anti-codon PF01336.20 75 6.5e-05 16.5 0.0 1 2 0.023 3.9 1.1 0.0 43 62 61 80 51 83 0.80 # 17314 # 17724 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_18 - 137 tRNA_anti-codon PF01336.20 75 6.5e-05 16.5 0.0 2 2 1.9e-06 0.00032 14.2 0.0 3 68 71 129 69 135 0.82 # 17314 # 17724 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_22 - 347 AAA_24 PF13479.1 213 0.00098 12.4 0.1 1 1 3.1e-05 0.0026 11.0 0.1 5 23 126 144 124 154 0.84 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AAA_24 PF13479.1 213 0.0023 11.2 0.1 1 1 6.1e-05 0.0052 10.0 0.1 5 23 103 121 99 127 0.85 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_18 - 137 BOF PF04076.8 103 5.2e-22 71.3 0.3 1 1 4.2e-24 7.2e-22 70.9 0.2 9 102 40 134 29 135 0.85 # 17314 # 17724 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_6 - 260 NACHT PF05729.7 166 0.00022 14.6 0.0 1 1 2.1e-06 0.00035 13.9 0.0 3 49 104 151 102 200 0.81 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_6 - 260 AAA_25 PF13481.1 194 1.2e-06 21.7 0.1 1 1 4.4e-08 3.8e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 AAA_25 PF13481.1 194 3.3e-05 17.0 0.3 1 1 1.3e-06 0.00011 15.3 0.1 28 56 120 147 97 176 0.83 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_22 - 347 AAA_28 PF13521.1 163 1.2e-05 19.0 0.1 1 1 3.6e-07 3.1e-05 17.7 0.0 1 51 126 177 126 257 0.86 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AAA_28 PF13521.1 163 0.00043 13.9 0.0 1 1 1e-05 0.00085 13.0 0.0 1 49 103 156 103 171 0.73 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_22 - 347 AAA_5 PF07728.9 139 2.7e-06 20.9 3.4 1 1 1.2e-07 1e-05 19.0 0.3 2 37 127 162 126 245 0.64 # 23863 # 24903 # -1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.433 2_6 - 260 AAA_5 PF07728.9 139 3.1e-05 17.4 0.0 1 1 9.1e-07 7.8e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 7464 # 8243 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/452a0d65-04dd-413f-a322-adabed37fe66 # Target file: checkm_output/bins/pm1182/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1182/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/452a0d65-04dd-413f-a322-adabed37fe66 checkm_output/bins/pm1182/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:10 2020 # [ok]