# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 398 Eno-Rase_NADH_b PF12242.3 78 9.2e-41 130.4 0.7 1 1 2.4e-42 2.2e-40 129.2 0.7 1 77 2 79 2 80 0.98 # 24488 # 25681 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_28 - 398 Eno-Rase_FAD_bd PF07055.7 65 1.8e-33 107.1 1.5 1 1 3.4e-35 3.1e-33 106.4 1.5 2 65 323 386 322 386 0.98 # 24488 # 25681 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_72 - 145 SSB PF00436.20 104 6.6e-32 102.3 0.2 1 1 8.4e-34 7.6e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 54157 # 54591 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_81 - 388 DUF87 PF01935.12 229 8.4e-05 15.2 0.0 1 1 1.8e-06 0.00016 14.2 0.0 28 45 157 174 155 188 0.89 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 AAA_22 PF13401.1 131 3.8e-06 19.9 0.0 1 1 1.9e-07 8.7e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_4 - 1017 AAA_22 PF13401.1 131 0.00034 13.5 0.0 1 1 2.4e-05 0.0011 11.9 0.0 8 69 492 557 486 594 0.67 # 1592 # 4642 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_81 - 388 ATP_bind_1 PF03029.12 238 0.00073 11.8 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 25 157 181 157 191 0.84 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_32 - 492 NAD_binding_7 PF13241.1 103 1.6e-05 18.0 0.0 1 1 4.8e-07 4.3e-05 16.5 0.0 5 75 35 113 32 119 0.82 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_4 - 1017 AAA_17 PF13207.1 121 4.1e-05 17.2 0.0 1 1 2.9e-06 0.00026 14.6 0.0 3 28 492 523 492 587 0.67 # 1592 # 4642 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_81 - 388 Miro PF08477.8 119 0.00085 12.6 0.0 1 1 2.1e-05 0.0019 11.5 0.0 4 28 157 186 156 220 0.72 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 MobB PF03205.9 140 0.00048 12.6 0.0 1 1 1e-05 0.00093 11.7 0.0 4 25 156 177 154 190 0.85 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 T2SE PF00437.15 272 1.9e-23 75.4 0.0 1 1 3.4e-25 3e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_32 - 492 AdoHcyase_NAD PF00670.16 162 0.00014 14.5 0.0 1 1 3.5e-06 0.00032 13.3 0.0 21 120 35 141 26 165 0.69 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_28 - 398 Enoyl_reductase PF12241.3 237 2.1e-117 382.9 0.1 1 1 2.9e-119 2.6e-117 382.6 0.1 2 237 82 317 81 317 0.99 # 24488 # 25681 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_32 - 492 F420_oxidored PF03807.12 96 0.00012 15.2 0.1 1 2 4.4e-05 0.0039 10.4 0.0 1 83 39 120 39 126 0.84 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_32 - 492 F420_oxidored PF03807.12 96 0.00012 15.2 0.1 2 2 0.047 4.3 0.7 0.0 7 21 441 455 439 477 0.83 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_81 - 388 SMC_N PF02463.14 220 0.00091 11.2 0.0 1 1 1.8e-05 0.0016 10.4 0.0 25 50 153 178 146 195 0.81 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 AAA_16 PF13191.1 185 0.00057 12.6 0.0 1 1 1.2e-05 0.0011 11.7 0.0 25 50 153 178 141 211 0.84 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 AAA_23 PF13476.1 202 2.2e-06 20.9 0.8 1 1 3.9e-08 3.5e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_4 - 1017 AAA_18 PF13238.1 129 4.9e-05 16.4 0.1 1 1 4.2e-06 0.00037 13.6 0.0 2 19 492 509 492 562 0.79 # 1592 # 4642 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_32 - 492 GFO_IDH_MocA PF01408.17 120 0.00069 12.9 0.0 1 1 1.5e-05 0.0013 12.0 0.0 2 80 39 116 38 122 0.78 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_81 - 388 KaiC PF06745.8 227 0.0007 11.5 0.0 1 1 1.4e-05 0.0012 10.7 0.0 11 59 144 191 137 201 0.76 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 AAA_29 PF13555.1 62 7.6e-06 18.2 0.1 1 1 2e-07 1.8e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.6 0.1 1 2 0.00093 0.083 5.5 0.0 26 45 84 103 77 114 0.83 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.6 0.1 2 2 0.00012 0.01 8.4 0.0 21 54 242 274 230 278 0.91 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_11 - 696 TraG-D_C PF12696.2 128 0.00012 14.7 0.1 1 1 2.4e-06 0.00021 13.9 0.1 3 94 437 524 435 556 0.78 # 12352 # 14439 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_32 - 492 2-Hacid_dh_C PF02826.14 178 1.2e-06 20.5 0.0 1 1 2.7e-08 2.4e-06 19.5 0.0 31 105 32 112 7 128 0.80 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_32 - 492 ApbA PF02558.11 151 9.4e-05 14.6 0.0 1 1 1.8e-06 0.00016 13.9 0.0 1 95 40 126 40 153 0.81 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_81 - 388 FtsK_SpoIIIE PF01580.13 205 9.5e-05 14.7 0.0 1 1 2.1e-06 0.00019 13.7 0.0 41 59 155 173 135 184 0.85 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 ABC_tran PF00005.22 137 0.0001 15.4 0.0 1 1 2.2e-06 0.0002 14.5 0.0 15 33 156 174 147 217 0.82 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_4 - 1017 AAA_19 PF13245.1 76 0.00033 13.2 0.0 1 1 1.2e-05 0.001 11.6 0.0 14 32 492 509 481 523 0.86 # 1592 # 4642 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_4 - 1017 AAA_10 PF12846.2 304 6.8e-42 136.6 0.0 1 1 4.6e-43 1.4e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 1592 # 4642 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_11 - 696 AAA_10 PF12846.2 304 5.7e-10 31.8 0.0 1 1 2.8e-11 8.4e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 12352 # 14439 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_81 - 388 AAA_10 PF12846.2 304 1.1e-06 21.0 0.0 1 1 2.1e-07 6.3e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_28 - 398 adh_short_C2 PF13561.1 241 0.00036 13.1 0.0 1 2 2.6e-05 0.0023 10.4 0.0 2 86 49 144 48 169 0.72 # 24488 # 25681 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_28 - 398 adh_short_C2 PF13561.1 241 0.00036 13.1 0.0 2 2 0.038 3.4 0.1 0.0 122 189 213 281 203 299 0.71 # 24488 # 25681 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_4 - 1017 DUF2075 PF09848.4 352 0.00033 12.4 0.0 1 1 1e-05 0.00094 10.9 0.0 5 22 492 509 489 526 0.84 # 1592 # 4642 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_62 - 287 Methyltransf_27 PF13708.1 194 5.5e-69 224.3 0.0 1 1 1e-70 9.2e-69 223.6 0.0 2 194 89 282 88 282 0.98 # 49628 # 50488 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_11 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 1 3 1.7e-05 0.0015 9.8 0.0 16 36 134 154 125 158 0.88 # 12352 # 14439 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_11 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 2 3 9.3e-05 0.0084 7.4 0.1 93 140 235 281 229 303 0.80 # 12352 # 14439 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_11 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 3 3 0.083 7.4 -2.3 0.0 293 323 482 512 405 546 0.58 # 12352 # 14439 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_81 - 388 GTP_EFTU PF00009.22 188 0.00098 11.3 0.0 1 1 2e-05 0.0018 10.5 0.0 8 34 157 183 155 195 0.87 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 RNA_helicase PF00910.17 107 0.00099 12.1 0.0 1 1 2.5e-05 0.0022 10.9 0.0 3 26 157 180 156 197 0.81 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_32 - 492 IlvN PF07991.7 165 3.6e-63 204.6 0.2 1 1 6.6e-65 5.9e-63 203.9 0.2 2 165 35 204 34 204 0.98 # 28833 # 30308 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.562 1_81 - 388 NACHT PF05729.7 166 0.00031 13.2 0.0 1 1 6.6e-06 0.0006 12.3 0.0 4 29 156 181 154 188 0.83 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_81 - 388 AAA_25 PF13481.1 194 5.1e-06 18.8 0.0 1 1 1.1e-07 1e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 60353 # 61516 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_19 - 145 eIF-1a PF01176.14 65 0.0004 12.6 0.1 1 1 7.6e-06 0.00069 11.8 0.1 29 63 55 88 52 89 0.85 # 19112 # 19546 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d543498d-b68a-4d82-859e-b4efd2e71880 # Target file: checkm_output/bins/pm1180/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1180/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d543498d-b68a-4d82-859e-b4efd2e71880 checkm_output/bins/pm1180/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:10 2020 # [ok]