# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_75 - 218 UPF0020 PF01170.13 180 6.3e-05 15.8 0.0 1 2 0.0012 0.15 4.8 0.0 107 122 11 26 5 79 0.72 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_75 - 218 UPF0020 PF01170.13 180 6.3e-05 15.8 0.0 2 2 5.7e-05 0.007 9.1 0.0 28 54 153 179 148 211 0.67 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_83 - 215 MipZ PF09140.6 261 2.9e-08 26.2 2.3 1 2 0.0008 0.099 4.8 0.5 7 25 8 26 2 38 0.71 # 76769 # 77413 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_83 - 215 MipZ PF09140.6 261 2.9e-08 26.2 2.3 2 2 9e-09 1.1e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 76769 # 77413 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_66 - 176 SSB PF00436.20 104 7.4e-41 131.5 0.3 1 1 7.9e-43 9.7e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 63595 # 64122 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_25 - 383 DUF87 PF01935.12 229 0.00075 12.5 0.0 1 1 1.1e-05 0.0014 11.7 0.0 28 56 162 191 161 192 0.88 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 AAA_22 PF13401.1 131 1.2e-05 18.6 0.0 1 1 4.9e-07 3e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_22 PF13401.1 131 0.00033 14.0 0.0 1 1 1.3e-05 0.00078 12.8 0.0 6 28 227 249 222 330 0.77 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 ATP_bind_1 PF03029.12 238 5.7e-05 15.9 0.0 1 1 7.2e-07 8.8e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_75 - 218 N6_N4_Mtase PF01555.13 231 5.2e-36 117.4 0.0 1 1 1.5e-35 1.9e-33 109.0 0.0 1 228 11 190 11 193 0.91 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_25 - 383 AAA_17 PF13207.1 121 2.3e-05 18.4 0.1 1 2 4.7e-06 0.00029 14.9 0.0 3 47 161 208 161 251 0.76 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 AAA_17 PF13207.1 121 2.3e-05 18.4 0.1 2 2 0.086 5.3 1.1 0.1 24 113 332 363 274 374 0.60 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_17 PF13207.1 121 2.7e-05 18.2 0.2 1 1 2.1e-06 0.00013 16.0 0.0 1 24 227 255 227 345 0.72 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 1 2 0.017 2 1.3 0.0 14 60 61 108 61 127 0.88 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 2 2 3.1e-06 0.00038 13.4 0.0 5 26 162 183 160 193 0.90 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 T2SE PF00437.15 272 2.9e-41 134.3 0.1 1 1 9.6e-43 5.9e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 T2SE PF00437.15 272 9.9e-36 116.2 0.0 1 1 2.4e-37 1.5e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 G-alpha PF00503.15 389 0.00077 11.3 0.0 1 2 0.054 6.7 -1.6 0.0 234 272 70 113 29 117 0.79 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 G-alpha PF00503.15 389 0.00077 11.3 0.0 2 2 1.9e-05 0.0023 9.8 0.0 58 87 225 254 214 325 0.84 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_83 - 215 VirC1 PF07015.6 231 0.0005 12.4 0.0 1 2 0.00073 0.09 5.0 0.0 3 29 3 29 1 36 0.81 # 76769 # 77413 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_83 - 215 VirC1 PF07015.6 231 0.0005 12.4 0.0 2 2 0.00052 0.064 5.5 0.0 87 190 77 181 59 194 0.70 # 76769 # 77413 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_13 - 518 AAA_16 PF13191.1 185 0.00011 15.4 0.0 1 1 6.4e-06 0.00039 13.6 0.0 8 51 213 252 212 301 0.78 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_16 PF13191.1 185 0.00036 13.7 0.0 1 1 1.2e-05 0.00075 12.7 0.0 27 52 160 188 148 282 0.82 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_23 PF13476.1 202 0.00016 15.3 0.2 1 1 9.7e-06 0.0006 13.4 0.0 20 38 226 244 208 249 0.84 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_23 PF13476.1 202 0.00027 14.5 0.0 1 1 7.3e-06 0.00045 13.8 0.0 19 40 157 178 142 209 0.83 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 AAA_18 PF13238.1 129 1.9e-05 18.2 0.0 1 1 6e-07 3.7e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_18 PF13238.1 129 0.0004 13.9 0.0 1 1 2.1e-05 0.0013 12.2 0.0 1 18 228 245 228 316 0.86 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_83 - 215 CbiA PF01656.18 195 1.5e-09 30.7 0.1 1 1 1.8e-11 2.2e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 76769 # 77413 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_13 - 518 AAA_14 PF13173.1 128 0.00096 12.3 0.0 1 1 3.7e-05 0.0045 10.1 0.0 5 30 228 254 225 286 0.80 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_29 PF13555.1 62 3.4e-05 16.5 0.0 1 1 1.1e-06 7e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_29 PF13555.1 62 4.7e-05 16.1 0.0 1 1 2.3e-06 0.00014 14.6 0.0 26 44 160 178 151 186 0.83 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA PF00004.24 132 0.00031 14.2 0.1 1 3 0.064 7.9 -0.1 0.0 38 57 81 100 52 110 0.81 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA PF00004.24 132 0.00031 14.2 0.1 2 3 0.00033 0.04 7.3 0.0 1 21 228 248 228 278 0.83 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA PF00004.24 132 0.00031 14.2 0.1 3 3 0.017 2.1 1.8 0.0 9 66 442 508 436 515 0.64 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_50 - 764 TraG-D_C PF12696.2 128 6.4e-07 22.5 0.2 1 1 1.2e-08 1.4e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 48040 # 50331 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_75 - 218 Methyltransf_26 PF13659.1 117 7.6e-10 32.1 0.0 1 2 1.7e-05 0.0021 11.3 0.0 70 114 10 61 5 64 0.69 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_75 - 218 Methyltransf_26 PF13659.1 117 7.6e-10 32.1 0.0 2 2 8.9e-08 1.1e-05 18.7 0.0 4 45 157 197 154 213 0.82 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_13 - 518 AAA_30 PF13604.1 196 0.00039 13.2 0.0 1 1 5.8e-06 0.00071 12.4 0.0 4 44 211 251 209 276 0.84 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_22 - 194 DNA_pol3_delta PF06144.8 172 2.5e-06 20.3 0.0 1 1 3e-08 3.6e-06 19.8 0.0 35 99 91 151 73 178 0.80 # 20781 # 21362 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_13 - 518 ABC_tran PF00005.22 137 9.2e-05 16.0 0.0 1 1 5.3e-06 0.00033 14.2 0.0 12 37 226 251 217 288 0.81 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 ABC_tran PF00005.22 137 0.00014 15.4 0.0 1 1 4.3e-06 0.00027 14.5 0.0 16 35 162 181 152 211 0.87 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_75 - 218 Cons_hypoth95 PF03602.10 183 1.6e-05 17.5 0.0 1 2 0.00046 0.057 6.0 0.0 114 168 10 66 8 73 0.67 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_75 - 218 Cons_hypoth95 PF03602.10 183 1.6e-05 17.5 0.0 2 2 3.6e-05 0.0044 9.6 0.0 41 62 152 173 132 208 0.78 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_13 - 518 DAP3 PF10236.4 309 0.00077 11.6 0.0 1 1 1.2e-05 0.0015 10.7 0.0 21 42 223 244 215 253 0.86 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_19 PF13245.1 76 0.00012 15.1 0.0 1 1 2.6e-06 0.00032 13.7 0.0 10 46 226 259 218 268 0.79 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_38 - 1015 AAA_10 PF12846.2 304 1.4e-30 99.9 0.0 1 1 1e-31 3.2e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 35037 # 38081 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_50 - 764 AAA_10 PF12846.2 304 3.2e-05 16.6 1.0 1 1 3.1e-06 9.6e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 48040 # 50331 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_13 - 518 AAA_10 PF12846.2 304 0.00028 13.6 0.0 1 1 1.7e-05 0.00051 12.7 0.0 4 30 228 256 226 320 0.81 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 383 AAA_10 PF12846.2 304 0.00063 12.4 0.0 1 1 4e-05 0.0012 11.4 0.0 2 21 158 177 157 196 0.83 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_54 - 283 Methyltransf_27 PF13708.1 194 8.8e-67 217.6 0.0 1 1 9.6e-69 1.2e-66 217.2 0.0 2 194 85 278 84 278 0.96 # 54064 # 54912 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_50 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 1 2 9.3e-05 0.011 7.4 0.0 11 32 132 153 126 157 0.84 # 48040 # 50331 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_50 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 2 2 3e-05 0.0037 9.0 0.1 247 332 440 525 427 555 0.88 # 48040 # 50331 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_75 - 218 MethyltransfD12 PF02086.10 260 0.001 11.7 0.0 1 2 0.042 5.1 -0.4 0.0 179 188 12 21 9 79 0.81 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_75 - 218 MethyltransfD12 PF02086.10 260 0.001 11.7 0.0 2 2 3.7e-05 0.0046 9.6 0.0 20 46 153 179 138 187 0.78 # 70224 # 70877 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 1_25 - 383 RNA_helicase PF00910.17 107 0.00012 15.5 0.0 1 1 1.9e-06 0.00023 14.5 0.0 2 28 161 187 160 205 0.83 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_25 - 383 AAA_25 PF13481.1 194 0.00024 13.7 0.0 1 1 7e-06 0.00043 12.9 0.0 24 58 148 182 124 207 0.78 # 23027 # 24175 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_13 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 1 2 8.7e-05 0.0054 9.3 0.0 25 65 217 260 200 270 0.72 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_13 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 2 2 0.039 2.4 0.7 0.0 153 190 297 337 292 340 0.74 # 10066 # 11619 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1418d48b-7537-441b-8a3f-a1e9750f9a95 # Target file: checkm_output/bins/pm1178/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1178/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1418d48b-7537-441b-8a3f-a1e9750f9a95 checkm_output/bins/pm1178/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:54:07 2020 # [ok]